Wall clock time and date at job start Tue Mar 31 2020 18:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.47166 * 2 1 4 4 C 1.50703 * 109.46770 * 119.99734 * 2 1 3 5 5 O 1.20825 * 119.99894 * 120.00427 * 4 2 1 6 6 O 1.34232 * 119.99845 * 300.00162 * 4 2 1 7 7 N 1.46493 * 109.47367 * 239.99661 * 2 1 3 8 8 C 1.34781 * 120.00243 * 120.00307 * 7 2 1 9 9 O 1.21585 * 119.99865 * 297.86455 * 8 7 2 10 10 C 1.47530 * 120.00118 * 117.85655 * 8 7 2 11 11 C 1.39671 * 120.19780 * 54.22276 * 10 8 7 12 12 C 1.37826 * 119.92290 * 180.02562 * 11 10 8 13 13 C 1.38578 * 120.32088 * 0.02562 * 12 11 10 14 14 C 1.38020 * 120.40099 * 0.02562 * 13 12 11 15 15 C 1.38830 * 120.07477 * 359.97438 * 14 13 12 16 16 O 1.35523 * 120.16087 * 180.02562 * 15 14 13 17 17 C 1.34809 * 117.00103 * 354.39876 * 16 15 14 18 18 H 1.07994 * 120.00298 * 5.05166 * 17 16 15 19 19 C 1.38705 * 119.99787 * 185.05845 * 17 16 15 20 20 N 1.31510 * 120.00288 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99514 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47053 * 90.00125 * 21 19 17 23 23 H 1.48501 * 109.46904 * 209.99618 * 21 19 17 24 24 H 1.48497 * 109.47273 * 329.99563 * 21 19 17 25 25 C 1.46505 * 120.00192 * 299.99856 * 7 2 1 26 26 C 1.53774 * 113.61605 * 254.45846 * 25 7 2 27 27 C 1.53782 * 87.08232 * 220.01862 * 26 25 7 28 28 C 1.53779 * 113.61413 * 156.95580 * 25 7 2 29 29 H 1.08994 * 109.47306 * 300.00345 * 1 2 3 30 30 H 1.09004 * 109.46308 * 60.00416 * 1 2 3 31 31 H 1.08998 * 109.46768 * 179.97438 * 1 2 3 32 32 H 0.96704 * 116.99773 * 180.02562 * 6 4 2 33 33 H 1.08004 * 120.03488 * 0.04147 * 11 10 8 34 34 H 1.08000 * 119.83977 * 180.28155 * 12 11 10 35 35 H 1.08001 * 119.79627 * 179.97438 * 13 12 11 36 36 H 1.08005 * 119.96245 * 180.02562 * 14 13 12 37 37 H 0.97002 * 120.00613 * 180.02562 * 20 19 17 38 38 H 1.09001 * 112.84319 * 25.76327 * 25 7 2 39 39 H 1.09007 * 113.61540 * 334.56561 * 26 25 7 40 40 H 1.09002 * 113.62058 * 105.46973 * 26 25 7 41 41 H 1.08998 * 113.61471 * 270.88486 * 27 26 25 42 42 H 1.09001 * 113.61883 * 139.98204 * 27 26 25 43 43 H 1.08994 * 113.61870 * 254.53348 * 28 25 7 44 44 H 1.09004 * 113.61339 * 25.35844 * 28 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7270 -1.6927 1.1197 6 8 1.7079 -0.2517 2.4496 7 7 2.0184 -0.6906 -1.1961 8 6 2.7934 -0.0357 -2.0833 9 8 2.3568 0.9344 -2.6720 10 6 4.1714 -0.4958 -2.3399 11 6 4.4119 -1.8202 -2.7126 12 6 5.7015 -2.2442 -2.9505 13 6 6.7628 -1.3625 -2.8212 14 6 6.5405 -0.0512 -2.4526 15 6 5.2481 0.3935 -2.2090 16 8 5.0278 1.6809 -1.8474 17 6 6.1135 2.4495 -1.6286 18 1 7.1008 2.0572 -1.8221 19 6 5.9624 3.7444 -1.1548 20 7 4.7600 4.2224 -0.9195 21 14 7.4668 4.8091 -0.8509 22 1 7.7962 5.5647 -2.0862 23 1 7.1839 5.7626 0.2519 24 1 8.6163 3.9466 -0.4768 25 6 1.6646 -2.0933 -1.4278 26 6 2.8221 -3.0717 -1.1680 27 6 2.3489 -3.8393 -2.4136 28 6 1.7454 -2.5130 -2.9051 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 2.0539 -0.7404 3.2090 33 1 3.5881 -2.5112 -2.8146 34 1 5.8855 -3.2674 -3.2431 35 1 7.7701 -1.7039 -3.0093 36 1 7.3729 0.6300 -2.3544 37 1 4.6543 5.1280 -0.5885 38 1 0.7315 -2.3800 -0.9429 39 1 3.8083 -2.6213 -1.2811 40 1 2.7172 -3.6360 -0.2413 41 1 1.6035 -4.6048 -2.1978 42 1 3.1647 -4.2054 -3.0370 43 1 0.7713 -2.6262 -3.3808 44 1 2.4362 -1.9089 -3.4934 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589477495.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:37 Heat of formation + Delta-G solvation = -54.267928 kcal Electronic energy + Delta-G solvation = -30729.414833 eV Core-core repulsion = 26615.626592 eV Total energy + Delta-G solvation = -4113.788241 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.65606 -41.15341 -40.28409 -39.40025 -37.94696 -37.10544 -36.11336 -34.37680 -32.57602 -31.46344 -30.56094 -27.47837 -26.67257 -26.54117 -25.73771 -24.66036 -23.64938 -22.31144 -21.42801 -20.38281 -19.65869 -19.08166 -18.88250 -18.01992 -17.75868 -17.20320 -17.03372 -16.51245 -16.41766 -16.22574 -16.02132 -15.66326 -15.38091 -14.98375 -14.60963 -14.48506 -14.25964 -14.12782 -13.87869 -13.59703 -13.47599 -13.30664 -13.11623 -12.90443 -12.68772 -12.64195 -12.45419 -12.39769 -12.23403 -12.10436 -11.86254 -11.73504 -11.60021 -11.24295 -11.01503 -10.93067 -10.83623 -9.72711 -9.34689 -9.06705 -8.51867 -6.21941 0.15581 0.66960 1.09209 1.15952 1.30335 1.40896 1.48706 1.82247 2.12303 2.25931 2.76946 3.09705 3.36095 3.48880 3.65891 3.69195 3.87096 3.92687 3.94972 4.08312 4.16657 4.20346 4.22780 4.44175 4.53512 4.62587 4.71734 4.76009 4.78340 4.86096 4.96877 5.04060 5.06656 5.13127 5.14766 5.15629 5.30791 5.42799 5.49572 5.56647 5.60346 5.67638 5.86202 5.92698 6.13336 6.33171 6.80276 6.90374 6.99949 7.68743 8.69978 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.011382 B = 0.005340 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.374821 B = 5242.232030 C = 6568.110717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.162 3.838 3 H 0.083 0.917 4 C 0.471 3.529 5 O -0.513 6.513 6 O -0.508 6.508 7 N -0.656 5.656 8 C 0.623 3.377 9 O -0.521 6.521 10 C -0.253 4.253 11 C -0.073 4.073 12 C -0.207 4.207 13 C -0.045 4.045 14 C -0.258 4.258 15 C 0.147 3.853 16 O -0.215 6.215 17 C -0.423 4.423 18 H 0.104 0.896 19 C -0.019 4.019 20 N -0.912 5.912 21 Si 1.021 2.979 22 H -0.263 1.263 23 H -0.269 1.269 24 H -0.251 1.251 25 C 0.134 3.866 26 C -0.174 4.174 27 C -0.130 4.130 28 C -0.180 4.180 29 H 0.093 0.907 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.427 0.573 33 H 0.201 0.799 34 H 0.162 0.838 35 H 0.153 0.847 36 H 0.124 0.876 37 H 0.273 0.727 38 H 0.128 0.872 39 H 0.093 0.907 40 H 0.072 0.928 41 H 0.118 0.882 42 H 0.093 0.907 43 H 0.097 0.903 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.674 -17.180 2.623 18.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.056 3.944 3 H 0.101 0.899 4 C 0.312 3.688 5 O -0.401 6.401 6 O -0.322 6.322 7 N -0.394 5.394 8 C 0.416 3.584 9 O -0.393 6.393 10 C -0.258 4.258 11 C -0.089 4.089 12 C -0.225 4.225 13 C -0.063 4.063 14 C -0.277 4.277 15 C 0.094 3.906 16 O -0.119 6.119 17 C -0.498 4.498 18 H 0.122 0.878 19 C -0.218 4.218 20 N -0.548 5.548 21 Si 0.839 3.161 22 H -0.188 1.188 23 H -0.194 1.194 24 H -0.174 1.174 25 C 0.033 3.967 26 C -0.212 4.212 27 C -0.167 4.167 28 C -0.217 4.217 29 H 0.112 0.888 30 H 0.087 0.913 31 H 0.104 0.896 32 H 0.289 0.711 33 H 0.217 0.783 34 H 0.180 0.820 35 H 0.171 0.829 36 H 0.142 0.858 37 H 0.082 0.918 38 H 0.146 0.854 39 H 0.111 0.889 40 H 0.091 0.909 41 H 0.136 0.864 42 H 0.111 0.889 43 H 0.115 0.885 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.187 -16.334 2.037 17.585 hybrid contribution 1.087 1.077 0.821 1.737 sum -5.100 -15.258 2.858 16.339 Atomic orbital electron populations 1.22055 0.89009 1.04442 1.04413 1.20242 0.98190 0.95005 0.80940 0.89892 1.23852 0.77050 0.82515 0.85424 1.90694 1.35362 1.26730 1.87321 1.84491 1.71936 1.59209 1.16536 1.46857 1.56651 1.13558 1.22350 1.18292 0.84267 0.79566 0.76318 1.90696 1.74315 1.29153 1.45158 1.19512 0.91811 0.95914 1.18547 1.22972 1.01199 0.92439 0.92337 1.21206 0.91550 1.01471 1.08320 1.21410 1.00747 0.91205 0.92973 1.21253 0.95406 0.99087 1.11944 1.19874 0.94148 0.84489 0.92094 1.83948 1.35451 1.17144 1.75400 1.21917 0.86116 0.95449 1.46356 0.87832 1.26670 1.02108 0.97628 0.95384 1.70209 1.24326 1.17323 1.42985 0.84574 0.75525 0.77259 0.78730 1.18760 1.19376 1.17400 1.22795 0.99400 0.77602 0.96934 1.24238 1.00214 0.97657 0.99077 1.22871 1.01818 0.95469 0.96540 1.23905 1.03303 0.98618 0.95924 0.88781 0.91264 0.89564 0.71112 0.78291 0.82046 0.82925 0.85805 0.91765 0.85425 0.88948 0.90934 0.86372 0.88896 0.88491 0.90747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 9.12 71.98 0.66 -2.77 16 2 C 0.16 5.54 3.19 44.25 0.14 5.68 16 3 H 0.08 3.54 7.89 -2.38 -0.02 3.52 16 4 C 0.47 14.61 7.52 71.24 0.54 15.14 16 5 O -0.51 -17.50 13.90 21.97 0.31 -17.19 16 6 O -0.51 -12.19 13.33 -51.43 -0.69 -12.87 16 7 N -0.66 -23.85 2.31 -778.98 -1.80 -25.65 16 8 C 0.62 29.10 4.35 86.69 0.38 29.48 16 9 O -0.52 -29.00 17.58 -1.22 -0.02 -29.02 16 10 C -0.25 -11.68 5.48 -19.99 -0.11 -11.79 16 11 C -0.07 -2.55 5.30 22.52 0.12 -2.43 16 12 C -0.21 -6.34 10.03 22.25 0.22 -6.12 16 13 C -0.05 -1.55 10.03 22.30 0.22 -1.32 16 14 C -0.26 -11.61 9.16 22.36 0.20 -11.40 16 15 C 0.15 7.82 6.65 22.91 0.15 7.97 16 16 O -0.21 -13.62 8.96 -17.27 -0.15 -13.77 16 17 C -0.42 -25.53 9.49 67.93 0.64 -24.89 16 18 H 0.10 5.70 5.21 -2.91 -0.02 5.68 16 19 C -0.02 -1.13 5.49 84.85 0.47 -0.66 16 20 N -0.91 -57.85 13.67 21.62 0.30 -57.56 16 21 Si 1.02 43.92 29.55 68.60 2.03 45.95 16 22 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 23 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 24 H -0.25 -9.93 7.11 99.48 0.71 -9.23 16 25 C 0.13 3.59 3.31 45.51 0.15 3.75 16 26 C -0.17 -4.46 5.38 31.12 0.17 -4.29 16 27 C -0.13 -2.27 7.31 31.12 0.23 -2.04 16 28 C -0.18 -4.22 6.83 31.12 0.21 -4.00 16 29 H 0.09 1.96 8.11 -2.39 -0.02 1.94 16 30 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 31 H 0.09 1.62 6.77 -2.39 -0.02 1.61 16 32 H 0.43 6.13 9.10 -74.05 -0.67 5.46 16 33 H 0.20 5.62 0.88 -2.91 0.00 5.62 16 34 H 0.16 3.40 8.06 -2.91 -0.02 3.38 16 35 H 0.15 3.89 8.06 -2.91 -0.02 3.87 16 36 H 0.12 5.60 5.64 -2.91 -0.02 5.58 16 37 H 0.27 15.85 8.31 -92.71 -0.77 15.07 16 38 H 0.13 2.69 6.70 -2.39 -0.02 2.67 16 39 H 0.09 2.97 3.89 -10.39 -0.04 2.93 16 40 H 0.07 1.84 7.47 -2.39 -0.02 1.82 16 41 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.09 1.40 7.56 -2.39 -0.02 1.39 16 43 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.07 2.22 4.59 -2.38 -0.01 2.21 16 Total: -1.00 -86.46 351.93 4.74 -81.72 By element: Atomic # 1 Polarization: 37.72 SS G_CDS: 0.38 Total: 38.10 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: 4.39 Total: -9.70 kcal Atomic # 7 Polarization: -81.71 SS G_CDS: -1.50 Total: -83.21 kcal Atomic # 8 Polarization: -72.31 SS G_CDS: -0.56 Total: -72.86 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -86.46 4.74 -81.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589477495.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.453 kcal (2) G-P(sol) polarization free energy of solvation -86.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds