Wall clock time and date at job start Tue Mar 31 2020 17:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 110.32582 * 2 1 4 4 C 1.54906 * 110.36743 * 237.64751 * 2 1 3 5 5 C 1.55555 * 101.59733 * 204.11977 * 4 2 1 6 6 C 1.54317 * 102.76221 * 35.52903 * 5 4 2 7 7 H 1.09000 * 109.88660 * 218.26703 * 6 5 4 8 8 C 1.50701 * 109.88368 * 97.25390 * 6 5 4 9 9 O 1.20820 * 120.00499 * 241.44322 * 8 6 5 10 10 O 1.34229 * 119.99489 * 61.71627 * 8 6 5 11 11 N 1.47022 * 107.40080 * 337.76505 * 6 5 4 12 12 C 1.34779 * 125.64764 * 179.05201 * 11 6 5 13 13 O 1.21282 * 120.00117 * 179.97438 * 12 11 6 14 14 C 1.50703 * 120.00087 * 359.97438 * 12 11 6 15 15 C 1.50699 * 109.47012 * 179.97438 * 14 12 11 16 16 C 1.38299 * 119.92963 * 269.72274 * 15 14 12 17 17 C 1.38110 * 120.06698 * 179.72917 * 16 15 14 18 18 C 1.38872 * 119.92801 * 0.54674 * 17 16 15 19 19 O 1.35752 * 120.06652 * 179.75095 * 18 17 16 20 20 C 1.34827 * 116.99925 * 174.44205 * 19 18 17 21 21 H 1.07999 * 120.00151 * 5.05235 * 20 19 18 22 22 C 1.38655 * 119.99941 * 185.05490 * 20 19 18 23 23 N 1.31558 * 120.00031 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00045 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47314 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47327 * 119.99734 * 24 22 20 27 27 H 1.48504 * 109.46985 * 240.00055 * 24 22 20 28 28 C 1.38880 * 119.86701 * 359.72553 * 18 17 16 29 29 C 1.38101 * 119.92821 * 0.02562 * 28 18 17 30 30 H 1.09005 * 109.47101 * 297.76633 * 1 2 3 31 31 H 1.09001 * 109.47211 * 57.75918 * 1 2 3 32 32 H 1.08994 * 109.47246 * 177.76037 * 1 2 3 33 33 H 1.09004 * 111.00649 * 322.22460 * 4 2 1 34 34 H 1.08994 * 111.00946 * 86.04016 * 4 2 1 35 35 H 1.09003 * 110.77433 * 277.23654 * 5 4 2 36 36 H 1.08997 * 110.83135 * 153.84645 * 5 4 2 37 37 H 0.96703 * 117.00019 * 179.72585 * 10 8 6 38 38 H 1.09000 * 109.46798 * 300.00078 * 14 12 11 39 39 H 1.09000 * 109.47538 * 59.99634 * 14 12 11 40 40 H 1.08003 * 119.96944 * 0.02562 * 16 15 14 41 41 H 1.08002 * 120.03390 * 180.27253 * 17 16 15 42 42 H 0.97003 * 119.99939 * 179.97438 * 23 22 20 43 43 H 1.07994 * 120.03605 * 179.97438 * 28 18 17 44 44 H 1.07994 * 119.96845 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0222 0.0000 4 6 2.0691 -0.7771 -1.2268 5 6 3.4818 -1.2010 -0.7323 6 6 3.2494 -1.4760 0.7683 7 1 4.1059 -1.1285 1.3459 8 6 3.0446 -2.9520 0.9931 9 8 2.0023 -3.3543 1.4530 10 8 4.0224 -3.8194 0.6876 11 7 2.0431 -0.7372 1.1690 12 6 1.4972 -0.7339 2.4013 13 8 0.4964 -0.0844 2.6194 14 6 2.1302 -1.5372 3.5081 15 6 1.3325 -1.3631 4.7747 16 6 1.6483 -0.3438 5.6544 17 6 0.9155 -0.1782 6.8133 18 6 -0.1321 -1.0435 7.1003 19 8 -0.8510 -0.8864 8.2410 20 6 -1.9245 -1.6860 8.4031 21 1 -2.1312 -2.4647 7.6840 22 6 -2.7629 -1.5084 9.4930 23 7 -2.5108 -0.5601 10.3693 24 14 -4.2497 -2.6167 9.7180 25 1 -4.3098 -3.5966 8.6038 26 1 -4.1363 -3.3412 11.0092 27 1 -5.4854 -1.7930 9.7193 28 6 -0.4432 -2.0695 6.2176 29 6 0.2900 -2.2268 5.0579 30 1 -0.3633 0.4788 0.9094 31 1 -0.3634 0.5482 -0.8692 32 1 -0.3633 -1.0268 -0.0402 33 1 1.4511 -1.6495 -1.4392 34 1 2.1393 -0.1288 -2.1001 35 1 4.1985 -0.3913 -0.8696 36 1 3.8162 -2.1042 -1.2427 37 1 3.8463 -4.7557 0.8531 38 1 2.1451 -2.5909 3.2295 39 1 3.1506 -1.1901 3.6712 40 1 2.4657 0.3264 5.4327 41 1 1.1597 0.6207 7.4978 42 1 -3.0977 -0.4357 11.1316 43 1 -1.2570 -2.7443 6.4382 44 1 0.0485 -3.0242 4.3708 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594217941.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:49 Heat of formation + Delta-G solvation = -114.809990 kcal Electronic energy + Delta-G solvation = -28732.853000 eV Core-core repulsion = 24616.439458 eV Total energy + Delta-G solvation = -4116.413541 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.39506 -39.65355 -38.88518 -37.61424 -36.50671 -36.26892 -32.75412 -32.21449 -31.82570 -30.82749 -30.04679 -27.17953 -26.55372 -25.07488 -23.56656 -22.75289 -21.87230 -21.44862 -20.46817 -18.91030 -18.35388 -17.90119 -17.60414 -17.29673 -16.83239 -15.97770 -15.82133 -15.07104 -14.68324 -14.44010 -14.29369 -14.20197 -13.98244 -13.71553 -13.50554 -13.43612 -13.18043 -13.16225 -12.62316 -12.55083 -12.27964 -12.22234 -12.02777 -11.85994 -11.69868 -11.56931 -11.25915 -11.18037 -11.04951 -10.80713 -10.75298 -10.64176 -10.46059 -10.35535 -9.43089 -9.23183 -8.96232 -8.74892 -8.05007 -7.07022 -6.37613 -3.95786 1.76140 2.21162 2.34928 2.40993 2.82415 3.00349 3.17589 3.19404 3.24785 3.91747 4.00118 4.03601 4.37798 4.59561 4.69698 4.71777 4.89547 4.97929 5.15243 5.16626 5.20450 5.24971 5.34760 5.36802 5.39526 5.45991 5.53033 5.60784 5.75499 5.87241 5.93697 5.95536 6.07612 6.15434 6.31420 6.44863 6.52563 6.79953 7.01414 7.14705 7.28473 7.34039 7.48770 7.52707 7.55537 7.93588 8.08369 8.29419 9.08531 9.79869 10.80828 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.020353 B = 0.002585 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.404342 B =10831.117795 C =11002.172577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.135 3.865 3 H 0.080 0.920 4 C -0.134 4.134 5 C -0.119 4.119 6 C 0.142 3.858 7 H 0.118 0.882 8 C 0.460 3.540 9 O -0.490 6.490 10 O -0.515 6.515 11 N -0.611 5.611 12 C 0.542 3.458 13 O -0.505 6.505 14 C -0.091 4.091 15 C -0.167 4.167 16 C -0.061 4.061 17 C -0.191 4.191 18 C 0.157 3.843 19 O -0.180 6.180 20 C -0.389 4.389 21 H 0.092 0.908 22 C 0.038 3.962 23 N -0.865 5.865 24 Si 0.940 3.060 25 H -0.267 1.267 26 H -0.276 1.276 27 H -0.276 1.276 28 C -0.232 4.232 29 C -0.054 4.054 30 H 0.092 0.908 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.413 0.587 38 H 0.106 0.894 39 H 0.084 0.916 40 H 0.107 0.893 41 H 0.116 0.884 42 H 0.268 0.732 43 H 0.126 0.874 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.402 -3.243 -24.930 29.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.032 3.968 3 H 0.098 0.902 4 C -0.172 4.172 5 C -0.157 4.157 6 C 0.035 3.965 7 H 0.135 0.865 8 C 0.300 3.700 9 O -0.377 6.377 10 O -0.327 6.327 11 N -0.350 5.350 12 C 0.333 3.667 13 O -0.378 6.378 14 C -0.130 4.130 15 C -0.168 4.168 16 C -0.080 4.080 17 C -0.211 4.211 18 C 0.103 3.897 19 O -0.083 6.083 20 C -0.466 4.466 21 H 0.109 0.891 22 C -0.166 4.166 23 N -0.500 5.500 24 Si 0.765 3.235 25 H -0.191 1.191 26 H -0.202 1.202 27 H -0.202 1.202 28 C -0.251 4.251 29 C -0.072 4.072 30 H 0.111 0.889 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.109 0.891 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.272 0.728 38 H 0.123 0.877 39 H 0.102 0.898 40 H 0.125 0.875 41 H 0.134 0.866 42 H 0.078 0.922 43 H 0.144 0.856 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 14.480 -2.337 -24.214 28.310 hybrid contribution -0.836 -1.374 0.156 1.616 sum 13.644 -3.711 -24.059 27.906 Atomic orbital electron populations 1.22206 0.93471 1.02863 1.04074 1.21942 0.95815 0.95325 0.83673 0.90192 1.23047 0.95383 1.01071 0.97747 1.22719 0.98583 1.03793 0.90608 1.21145 0.90956 0.84842 0.99513 0.86455 1.23984 0.81281 0.90393 0.74373 1.90762 1.27755 1.79655 1.39500 1.84491 1.45807 1.22856 1.79558 1.48629 1.28003 1.48103 1.10237 1.20679 0.83891 0.80946 0.81218 1.90681 1.24035 1.42102 1.80986 1.20737 0.98855 1.01554 0.91858 1.18617 1.01263 1.00809 0.96090 1.20400 0.98144 0.96031 0.93378 1.20136 0.99148 1.02136 0.99650 1.19370 0.91346 0.92505 0.86445 1.83974 1.36845 1.55848 1.31649 1.21379 1.01730 1.12915 1.10531 0.89067 1.25277 0.98677 0.97462 0.95162 1.70055 1.37515 1.30355 1.12081 0.85655 0.80028 0.79160 0.78637 1.19113 1.20196 1.20173 1.21111 1.04548 1.02377 0.97081 1.20538 0.93743 0.97387 0.95518 0.88908 0.92150 0.92594 0.90398 0.89115 0.88614 0.88848 0.72773 0.87653 0.89759 0.87469 0.86553 0.92171 0.85613 0.87775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.95 8.77 37.16 0.33 -1.62 16 2 C 0.13 1.27 3.77 -66.42 -0.25 1.02 16 3 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 4 C -0.13 -0.81 6.51 -24.37 -0.16 -0.96 16 5 C -0.12 -0.55 6.50 -24.68 -0.16 -0.71 16 6 C 0.14 1.08 3.20 -68.11 -0.22 0.86 16 7 H 0.12 0.66 8.14 -51.93 -0.42 0.23 16 8 C 0.46 4.06 6.72 36.01 0.24 4.30 16 9 O -0.49 -6.33 13.99 -18.75 -0.26 -6.59 16 10 O -0.52 -2.94 13.16 -39.26 -0.52 -3.45 16 11 N -0.61 -6.93 2.79 -156.90 -0.44 -7.37 16 12 C 0.54 8.46 6.89 -10.98 -0.08 8.38 16 13 O -0.51 -9.94 13.66 5.56 0.08 -9.86 16 14 C -0.09 -1.36 4.65 -29.03 -0.14 -1.50 16 15 C -0.17 -3.20 4.38 -104.58 -0.46 -3.66 16 16 C -0.06 -1.20 9.69 -39.61 -0.38 -1.59 16 17 C -0.19 -4.37 9.99 -39.39 -0.39 -4.77 16 18 C 0.16 4.07 6.65 -39.11 -0.26 3.81 16 19 O -0.18 -5.39 9.76 0.05 0.00 -5.39 16 20 C -0.39 -11.40 9.49 30.89 0.29 -11.11 16 21 H 0.09 2.50 5.20 -52.49 -0.27 2.23 16 22 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 23 N -0.86 -26.22 13.67 55.48 0.76 -25.46 16 24 Si 0.94 21.41 29.55 -169.99 -5.02 16.38 16 25 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 26 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 27 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 28 C -0.23 -5.53 9.17 -39.39 -0.36 -5.89 16 29 C -0.05 -1.12 9.69 -39.61 -0.38 -1.51 16 30 H 0.09 1.40 5.80 -51.93 -0.30 1.10 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.71 8.13 -51.93 -0.42 0.29 16 33 H 0.08 0.55 8.05 -51.93 -0.42 0.13 16 34 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.09 0.35 7.62 -51.93 -0.40 -0.05 16 37 H 0.41 0.97 9.10 45.56 0.41 1.39 16 38 H 0.11 1.55 4.98 -51.93 -0.26 1.29 16 39 H 0.08 1.01 8.08 -51.93 -0.42 0.59 16 40 H 0.11 1.76 8.06 -52.48 -0.42 1.33 16 41 H 0.12 2.54 8.06 -52.49 -0.42 2.11 16 42 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.13 2.99 5.64 -52.49 -0.30 2.70 16 44 H 0.10 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 365.26 15.07 5.50 5.50 Total: -1.00 -37.67 365.26 -7.26 -44.93 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -4.89 Total: 5.26 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: -2.47 Total: -13.95 kcal Atomic # 7 Polarization: -33.15 SS G_CDS: 0.32 Total: -32.83 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: -0.70 Total: -25.29 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -37.67 -7.26 -44.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594217941.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.884 kcal (2) G-P(sol) polarization free energy of solvation -37.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds