Wall clock time and date at job start Tue Mar 31 2020 17:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 110.32582 * 2 1 4 4 C 1.54906 * 110.36743 * 237.64751 * 2 1 3 5 5 C 1.55555 * 101.59733 * 204.11977 * 4 2 1 6 6 C 1.54317 * 102.76221 * 35.52903 * 5 4 2 7 7 H 1.09000 * 109.88660 * 218.26703 * 6 5 4 8 8 C 1.50701 * 109.88368 * 97.25390 * 6 5 4 9 9 O 1.20820 * 120.00499 * 241.44322 * 8 6 5 10 10 O 1.34229 * 119.99489 * 61.71627 * 8 6 5 11 11 N 1.47022 * 107.40080 * 337.76505 * 6 5 4 12 12 C 1.34779 * 125.64764 * 179.05201 * 11 6 5 13 13 O 1.21282 * 120.00117 * 179.97438 * 12 11 6 14 14 C 1.50703 * 120.00087 * 359.97438 * 12 11 6 15 15 C 1.50699 * 109.47012 * 179.97438 * 14 12 11 16 16 C 1.38299 * 119.92963 * 269.72274 * 15 14 12 17 17 C 1.38110 * 120.06698 * 179.72917 * 16 15 14 18 18 C 1.38872 * 119.92801 * 0.54674 * 17 16 15 19 19 O 1.35752 * 120.06652 * 179.75095 * 18 17 16 20 20 C 1.34827 * 116.99925 * 174.44205 * 19 18 17 21 21 H 1.07999 * 120.00151 * 5.05235 * 20 19 18 22 22 C 1.38655 * 119.99941 * 185.05490 * 20 19 18 23 23 N 1.31558 * 120.00031 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00045 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47314 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47327 * 119.99734 * 24 22 20 27 27 H 1.48504 * 109.46985 * 240.00055 * 24 22 20 28 28 C 1.38880 * 119.86701 * 359.72553 * 18 17 16 29 29 C 1.38101 * 119.92821 * 0.02562 * 28 18 17 30 30 H 1.09005 * 109.47101 * 297.76633 * 1 2 3 31 31 H 1.09001 * 109.47211 * 57.75918 * 1 2 3 32 32 H 1.08994 * 109.47246 * 177.76037 * 1 2 3 33 33 H 1.09004 * 111.00649 * 322.22460 * 4 2 1 34 34 H 1.08994 * 111.00946 * 86.04016 * 4 2 1 35 35 H 1.09003 * 110.77433 * 277.23654 * 5 4 2 36 36 H 1.08997 * 110.83135 * 153.84645 * 5 4 2 37 37 H 0.96703 * 117.00019 * 179.72585 * 10 8 6 38 38 H 1.09000 * 109.46798 * 300.00078 * 14 12 11 39 39 H 1.09000 * 109.47538 * 59.99634 * 14 12 11 40 40 H 1.08003 * 119.96944 * 0.02562 * 16 15 14 41 41 H 1.08002 * 120.03390 * 180.27253 * 17 16 15 42 42 H 0.97003 * 119.99939 * 179.97438 * 23 22 20 43 43 H 1.07994 * 120.03605 * 179.97438 * 28 18 17 44 44 H 1.07994 * 119.96845 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0222 0.0000 4 6 2.0691 -0.7771 -1.2268 5 6 3.4818 -1.2010 -0.7323 6 6 3.2494 -1.4760 0.7683 7 1 4.1059 -1.1285 1.3459 8 6 3.0446 -2.9520 0.9931 9 8 2.0023 -3.3543 1.4530 10 8 4.0224 -3.8194 0.6876 11 7 2.0431 -0.7372 1.1690 12 6 1.4972 -0.7339 2.4013 13 8 0.4964 -0.0844 2.6194 14 6 2.1302 -1.5372 3.5081 15 6 1.3325 -1.3631 4.7747 16 6 1.6483 -0.3438 5.6544 17 6 0.9155 -0.1782 6.8133 18 6 -0.1321 -1.0435 7.1003 19 8 -0.8510 -0.8864 8.2410 20 6 -1.9245 -1.6860 8.4031 21 1 -2.1312 -2.4647 7.6840 22 6 -2.7629 -1.5084 9.4930 23 7 -2.5108 -0.5601 10.3693 24 14 -4.2497 -2.6167 9.7180 25 1 -4.3098 -3.5966 8.6038 26 1 -4.1363 -3.3412 11.0092 27 1 -5.4854 -1.7930 9.7193 28 6 -0.4432 -2.0695 6.2176 29 6 0.2900 -2.2268 5.0579 30 1 -0.3633 0.4788 0.9094 31 1 -0.3634 0.5482 -0.8692 32 1 -0.3633 -1.0268 -0.0402 33 1 1.4511 -1.6495 -1.4392 34 1 2.1393 -0.1288 -2.1001 35 1 4.1985 -0.3913 -0.8696 36 1 3.8162 -2.1042 -1.2427 37 1 3.8463 -4.7557 0.8531 38 1 2.1451 -2.5909 3.2295 39 1 3.1506 -1.1901 3.6712 40 1 2.4657 0.3264 5.4327 41 1 1.1597 0.6207 7.4978 42 1 -3.0977 -0.4357 11.1316 43 1 -1.2570 -2.7443 6.4382 44 1 0.0485 -3.0242 4.3708 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594217941.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:48 Heat of formation + Delta-G solvation = -141.590896 kcal Electronic energy + Delta-G solvation = -28734.014307 eV Core-core repulsion = 24616.439458 eV Total energy + Delta-G solvation = -4117.574849 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.17001 -40.89163 -40.35559 -38.79324 -37.92849 -37.10876 -34.44613 -33.63080 -32.54104 -32.20319 -31.82304 -28.30404 -27.80996 -27.03098 -24.22867 -23.69748 -23.65065 -22.33366 -21.79482 -19.95237 -19.81491 -18.97590 -18.86666 -18.26384 -18.21525 -16.87510 -16.78009 -16.43738 -16.23473 -16.02764 -15.68204 -15.55261 -15.22592 -15.02293 -14.67766 -14.52039 -14.40095 -14.23539 -14.05294 -13.85861 -13.65416 -13.26403 -13.02522 -12.99857 -12.82603 -12.51239 -12.50910 -12.40526 -12.32385 -12.22877 -12.12595 -11.94779 -11.78994 -11.40339 -11.21528 -10.84961 -10.59259 -9.86092 -9.81513 -8.94618 -8.50003 -6.18150 0.56072 0.61277 1.12124 1.31641 1.39928 1.47970 1.50525 1.84038 2.15401 2.23048 2.78432 3.09973 3.40217 3.43288 3.48756 3.79974 3.91091 3.98308 4.02111 4.12743 4.16296 4.25740 4.33563 4.38652 4.47735 4.54235 4.57017 4.62234 4.72349 4.76546 4.93355 5.02533 5.03527 5.05924 5.11663 5.22160 5.24527 5.26710 5.50602 5.54477 5.62016 5.67124 5.74466 6.00030 6.15700 6.36633 6.94501 6.97804 7.18838 7.74587 8.73607 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.020353 B = 0.002585 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.404342 B =10831.117795 C =11002.172577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.126 3.874 3 H 0.096 0.904 4 C -0.126 4.126 5 C -0.107 4.107 6 C 0.130 3.870 7 H 0.149 0.851 8 C 0.466 3.534 9 O -0.540 6.540 10 O -0.501 6.501 11 N -0.608 5.608 12 C 0.539 3.461 13 O -0.561 6.561 14 C -0.089 4.089 15 C -0.144 4.144 16 C -0.055 4.055 17 C -0.201 4.201 18 C 0.116 3.884 19 O -0.230 6.230 20 C -0.416 4.416 21 H 0.097 0.903 22 C -0.022 4.022 23 N -0.920 5.920 24 Si 1.019 2.981 25 H -0.255 1.255 26 H -0.263 1.263 27 H -0.267 1.267 28 C -0.242 4.242 29 C -0.062 4.062 30 H 0.052 0.948 31 H 0.084 0.916 32 H 0.034 0.966 33 H 0.063 0.937 34 H 0.120 0.880 35 H 0.126 0.874 36 H 0.108 0.892 37 H 0.429 0.571 38 H 0.114 0.886 39 H 0.126 0.874 40 H 0.151 0.849 41 H 0.119 0.881 42 H 0.274 0.726 43 H 0.116 0.884 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.355 -3.939 -28.636 34.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.024 3.976 3 H 0.114 0.886 4 C -0.164 4.164 5 C -0.144 4.144 6 C 0.024 3.976 7 H 0.167 0.833 8 C 0.308 3.692 9 O -0.431 6.431 10 O -0.314 6.314 11 N -0.344 5.344 12 C 0.330 3.670 13 O -0.439 6.439 14 C -0.128 4.128 15 C -0.145 4.145 16 C -0.073 4.073 17 C -0.220 4.220 18 C 0.066 3.934 19 O -0.137 6.137 20 C -0.492 4.492 21 H 0.114 0.886 22 C -0.219 4.219 23 N -0.558 5.558 24 Si 0.838 3.162 25 H -0.179 1.179 26 H -0.188 1.188 27 H -0.192 1.192 28 C -0.261 4.261 29 C -0.080 4.080 30 H 0.071 0.929 31 H 0.102 0.898 32 H 0.053 0.947 33 H 0.082 0.918 34 H 0.138 0.862 35 H 0.145 0.855 36 H 0.126 0.874 37 H 0.291 0.709 38 H 0.131 0.869 39 H 0.144 0.856 40 H 0.169 0.831 41 H 0.137 0.863 42 H 0.083 0.917 43 H 0.134 0.866 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 17.537 -3.071 -28.015 33.194 hybrid contribution -1.468 -1.170 0.963 2.110 sum 16.069 -4.241 -27.053 31.750 Atomic orbital electron populations 1.22119 0.95740 1.01300 1.03123 1.22204 0.94143 0.96699 0.84545 0.88632 1.23025 0.95854 1.00569 0.96963 1.22821 0.98075 1.05598 0.87907 1.21662 0.89957 0.83715 1.02254 0.83348 1.24214 0.80712 0.91202 0.73043 1.90763 1.29739 1.80511 1.42046 1.84452 1.44370 1.23932 1.78657 1.48546 1.28729 1.47766 1.09322 1.20590 0.83333 0.80423 0.82686 1.90688 1.26347 1.44604 1.82285 1.20802 1.00027 1.02464 0.89529 1.19166 0.99629 0.98576 0.97136 1.20869 0.98382 0.96348 0.91670 1.20453 0.98767 1.01756 1.01001 1.19887 0.92547 0.94380 0.86636 1.83935 1.38218 1.57483 1.34030 1.21838 1.02432 1.13531 1.11366 0.88574 1.26595 1.01869 0.99151 0.94321 1.70188 1.39495 1.32894 1.13202 0.84529 0.75315 0.77096 0.79221 1.17890 1.18782 1.19198 1.21172 1.04955 1.02016 0.98004 1.20804 0.94036 0.98501 0.94675 0.92853 0.89752 0.94684 0.91793 0.86170 0.85528 0.87356 0.70925 0.86854 0.85645 0.83090 0.86302 0.91725 0.86637 0.86131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.77 8.77 71.98 0.63 -3.14 16 2 C 0.13 2.05 3.77 45.47 0.17 2.22 16 3 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 4 C -0.13 -1.00 6.51 32.13 0.21 -0.79 16 5 C -0.11 -0.40 6.50 31.92 0.21 -0.20 16 6 C 0.13 1.38 3.20 44.59 0.14 1.52 16 7 H 0.15 0.75 8.14 -2.39 -0.02 0.73 16 8 C 0.47 6.59 6.72 71.24 0.48 7.07 16 9 O -0.54 -12.90 13.99 21.98 0.31 -12.60 16 10 O -0.50 -3.64 13.16 -51.41 -0.68 -4.32 16 11 N -0.61 -12.10 2.79 -768.70 -2.15 -14.24 16 12 C 0.54 15.91 6.89 87.66 0.60 16.52 16 13 O -0.56 -22.24 13.66 -3.03 -0.04 -22.28 16 14 C -0.09 -2.42 4.65 29.10 0.14 -2.29 16 15 C -0.14 -5.34 4.38 -19.83 -0.09 -5.43 16 16 C -0.05 -2.08 9.69 22.25 0.22 -1.86 16 17 C -0.20 -9.40 9.99 22.39 0.22 -9.18 16 18 C 0.12 6.35 6.65 22.58 0.15 6.50 16 19 O -0.23 -14.79 9.76 -22.74 -0.22 -15.01 16 20 C -0.42 -25.87 9.49 67.92 0.64 -25.22 16 21 H 0.10 5.62 5.20 -2.91 -0.02 5.60 16 22 C -0.02 -1.31 5.49 84.83 0.47 -0.85 16 23 N -0.92 -58.68 13.67 21.61 0.30 -58.39 16 24 Si 1.02 45.37 29.55 68.60 2.03 47.40 16 25 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 26 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 27 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 28 C -0.24 -12.12 9.17 22.39 0.21 -11.91 16 29 C -0.06 -2.63 9.69 22.25 0.22 -2.41 16 30 H 0.05 1.67 5.80 -2.38 -0.01 1.66 16 31 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.03 0.91 8.13 -2.39 -0.02 0.89 16 33 H 0.06 0.72 8.05 -2.38 -0.02 0.70 16 34 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 35 H 0.13 -0.19 8.14 -2.39 -0.02 -0.21 16 36 H 0.11 0.19 7.62 -2.39 -0.02 0.17 16 37 H 0.43 0.52 9.10 -74.06 -0.67 -0.15 16 38 H 0.11 3.03 4.98 -2.39 -0.01 3.02 16 39 H 0.13 2.37 8.08 -2.39 -0.02 2.36 16 40 H 0.15 4.39 8.06 -2.91 -0.02 4.37 16 41 H 0.12 5.38 8.06 -2.91 -0.02 5.35 16 42 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 43 H 0.12 5.87 5.64 -2.91 -0.02 5.85 16 44 H 0.12 4.65 8.06 -2.91 -0.02 4.63 16 Total: -1.00 -91.35 365.26 4.53 -86.82 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: 0.38 Total: 22.07 kcal Atomic # 6 Polarization: -34.06 SS G_CDS: 4.61 Total: -29.45 kcal Atomic # 7 Polarization: -70.78 SS G_CDS: -1.85 Total: -72.63 kcal Atomic # 8 Polarization: -53.57 SS G_CDS: -0.63 Total: -54.21 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -91.35 4.53 -86.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594217941.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.769 kcal (2) G-P(sol) polarization free energy of solvation -91.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds