Wall clock time and date at job start Tue Mar 31 2020 17:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.44727 * 2 1 4 4 C 1.53044 * 109.45775 * 119.96383 * 2 1 3 5 5 C 1.53623 * 109.24194 * 58.53347 * 4 2 1 6 6 N 1.46927 * 108.54099 * 54.85404 * 5 4 2 7 7 C 1.34775 * 120.62963 * 126.37111 * 6 5 4 8 8 O 1.21592 * 120.00502 * 167.98937 * 7 6 5 9 9 C 1.47540 * 119.99857 * 347.98776 * 7 6 5 10 10 C 1.39670 * 120.19621 * 118.04966 * 9 7 6 11 11 C 1.37827 * 119.92058 * 180.02562 * 10 9 7 12 12 C 1.38573 * 120.32214 * 359.97325 * 11 10 9 13 13 C 1.38030 * 120.40131 * 0.04658 * 12 11 10 14 14 C 1.38833 * 120.07329 * 359.95784 * 13 12 11 15 15 O 1.35516 * 120.16250 * 180.30058 * 14 13 12 16 16 C 1.34814 * 116.99853 * 353.05412 * 15 14 13 17 17 H 1.08003 * 119.99936 * 354.03446 * 16 15 14 18 18 C 1.38699 * 120.00308 * 174.03211 * 16 15 14 19 19 N 1.31523 * 119.99541 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00324 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47122 * 60.00512 * 20 18 16 22 22 H 1.48498 * 109.47128 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47238 * 300.00190 * 20 18 16 24 24 C 1.46923 * 118.74259 * 306.09024 * 6 5 4 25 25 H 1.08998 * 109.58738 * 293.93643 * 24 6 5 26 26 C 1.50693 * 109.58773 * 173.64898 * 24 6 5 27 27 O 1.20824 * 119.99984 * 134.75162 * 26 24 6 28 28 O 1.34226 * 120.00356 * 314.75006 * 26 24 6 29 29 C 1.53041 * 109.46059 * 240.03044 * 2 1 3 30 30 H 1.08993 * 109.46901 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46868 * 299.96652 * 1 2 3 32 32 H 1.08992 * 109.46818 * 59.96960 * 1 2 3 33 33 H 1.08999 * 109.49460 * 178.60891 * 4 2 1 34 34 H 1.09001 * 109.49547 * 298.66829 * 4 2 1 35 35 H 1.08998 * 109.74267 * 295.11947 * 5 4 2 36 36 H 1.09000 * 109.66230 * 174.54468 * 5 4 2 37 37 H 1.08008 * 120.03914 * 359.97438 * 10 9 7 38 38 H 1.07994 * 119.84145 * 179.97438 * 11 10 9 39 39 H 1.08000 * 119.80181 * 180.02562 * 12 11 10 40 40 H 1.08003 * 119.95984 * 179.97438 * 13 12 11 41 41 H 0.97004 * 119.99973 * 179.97438 * 19 18 16 42 42 H 0.96699 * 117.00695 * 179.97438 * 28 26 24 43 43 H 1.08998 * 109.49464 * 181.39144 * 29 2 1 44 44 H 1.09004 * 109.49349 * 61.29820 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7207 1.2502 5 6 1.4947 -2.1569 1.2643 6 7 1.8626 -2.8088 0.0001 7 6 2.5157 -3.9878 0.0001 8 8 2.6229 -4.6235 -1.0309 9 6 3.1006 -4.5071 1.2511 10 6 2.6543 -5.7178 1.7857 11 6 3.2043 -6.1973 2.9550 12 6 4.1995 -5.4842 3.6040 13 6 4.6502 -4.2860 3.0877 14 6 4.1078 -3.7876 1.9109 15 8 4.5532 -2.6144 1.3992 16 6 5.4205 -1.9084 2.1520 17 1 5.6553 -2.2346 3.1545 18 6 6.0113 -0.7630 1.6393 19 7 5.7249 -0.3656 0.4187 20 14 7.2135 0.2149 2.6821 21 1 8.3645 -0.6480 3.0510 22 1 7.6999 1.3861 1.9096 23 1 6.5315 0.6842 3.9149 24 6 1.4997 -2.1542 -1.2642 25 1 0.4148 -2.1370 -1.3685 26 6 2.1061 -2.9113 -2.4174 27 8 1.4407 -3.1570 -3.3955 28 8 3.3856 -3.3127 -2.3581 29 6 2.0399 -0.7208 -1.2500 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5133 0.8902 32 1 -0.3633 0.5143 -0.8897 33 1 3.1296 -0.7427 1.2384 34 1 1.6963 -0.1930 2.1399 35 1 0.4093 -2.1377 1.3631 36 1 1.9301 -2.7063 2.0990 37 1 1.8785 -6.2772 1.2838 38 1 2.8579 -7.1334 3.3674 39 1 4.6248 -5.8680 4.5195 40 1 5.4259 -3.7359 3.5996 41 1 6.1378 0.4356 0.0601 42 1 3.7302 -3.7954 -3.1218 43 1 3.1296 -0.7428 -1.2382 44 1 1.6958 -0.1935 -2.1398 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594411789.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:40 Heat of formation + Delta-G solvation = -113.544347 kcal Electronic energy + Delta-G solvation = -31369.327843 eV Core-core repulsion = 27252.969184 eV Total energy + Delta-G solvation = -4116.358659 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.74907 -39.32032 -38.26612 -37.42912 -36.34038 -35.30199 -33.28739 -32.44524 -31.51366 -30.23538 -29.04618 -27.42731 -25.50772 -25.12858 -23.67742 -22.94078 -21.57970 -21.15798 -19.73869 -18.48220 -18.12098 -17.60192 -17.08243 -16.44268 -15.90165 -15.31751 -15.13871 -14.81501 -14.59852 -14.42530 -14.31070 -14.14745 -13.80265 -13.77482 -13.43523 -13.11390 -12.88669 -12.81609 -12.40248 -12.16274 -11.82719 -11.76269 -11.51325 -11.46236 -11.19024 -10.99408 -10.88391 -10.82519 -10.68184 -10.58984 -10.49035 -10.35388 -10.04623 -9.80556 -9.75211 -9.06023 -8.95901 -8.32375 -8.08955 -7.40564 -6.59115 -4.18242 1.79131 2.22662 2.70059 3.03727 3.05658 3.07617 3.25297 3.55456 3.65799 3.82965 4.39366 4.92058 4.97912 5.03839 5.07588 5.15897 5.28411 5.39038 5.43383 5.53980 5.60121 5.69229 5.76842 5.83077 5.90907 5.94885 5.98570 6.05845 6.12936 6.17237 6.31116 6.40305 6.52007 6.56431 6.60048 6.71845 6.83845 6.92296 7.01281 7.16865 7.18487 7.19020 7.23772 7.61457 7.82362 7.86531 8.55589 8.72028 8.84828 9.50230 10.55173 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.009311 B = 0.006906 C = 0.005080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3006.623861 B = 4053.439202 C = 5510.994567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.080 4.080 3 H 0.075 0.925 4 C -0.142 4.142 5 C 0.122 3.878 6 N -0.595 5.595 7 C 0.589 3.411 8 O -0.526 6.526 9 C -0.209 4.209 10 C -0.032 4.032 11 C -0.219 4.219 12 C -0.057 4.057 13 C -0.235 4.235 14 C 0.179 3.821 15 O -0.152 6.152 16 C -0.397 4.397 17 H 0.091 0.909 18 C 0.050 3.950 19 N -0.843 5.843 20 Si 0.934 3.066 21 H -0.271 1.271 22 H -0.278 1.278 23 H -0.270 1.270 24 C 0.160 3.840 25 H 0.106 0.894 26 C 0.509 3.491 27 O -0.545 6.545 28 O -0.476 6.476 29 C -0.124 4.124 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.117 0.883 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.088 0.912 37 H 0.115 0.885 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.132 0.868 41 H 0.271 0.729 42 H 0.396 0.604 43 H 0.101 0.899 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.700 0.262 3.537 7.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.099 4.099 3 H 0.093 0.907 4 C -0.180 4.180 5 C -0.001 4.001 6 N -0.331 5.331 7 C 0.380 3.620 8 O -0.404 6.404 9 C -0.214 4.214 10 C -0.051 4.051 11 C -0.238 4.238 12 C -0.075 4.075 13 C -0.254 4.254 14 C 0.123 3.877 15 O -0.053 6.053 16 C -0.473 4.473 17 H 0.108 0.892 18 C -0.157 4.157 19 N -0.476 5.476 20 Si 0.759 3.241 21 H -0.196 1.196 22 H -0.203 1.203 23 H -0.195 1.195 24 C 0.056 3.944 25 H 0.124 0.876 26 C 0.353 3.647 27 O -0.436 6.436 28 O -0.284 6.284 29 C -0.162 4.162 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.136 0.864 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.107 0.893 37 H 0.133 0.867 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.149 0.851 41 H 0.081 0.919 42 H 0.253 0.747 43 H 0.119 0.881 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.929 0.425 2.678 7.440 hybrid contribution 0.976 0.179 0.191 1.010 sum -5.953 0.605 2.869 6.636 Atomic orbital electron populations 1.22016 0.96122 1.01677 1.01394 1.20950 0.94578 0.99563 0.94776 0.90708 1.22205 1.05762 0.93702 0.96345 1.21756 0.98379 0.94460 0.85477 1.47830 1.58416 1.21177 1.05642 1.18117 0.75781 0.79710 0.88369 1.90641 1.59235 1.57291 1.33239 1.18636 1.04240 0.99191 0.99302 1.20634 0.97483 0.92524 0.94488 1.20506 1.02782 1.01906 0.98592 1.20909 0.94893 0.93768 0.97933 1.21138 1.05645 0.99122 0.99522 1.19234 0.91432 0.86187 0.90863 1.84001 1.53488 1.25154 1.42683 1.21257 1.23031 1.05880 0.97157 0.89190 1.25197 0.97448 0.96723 0.96334 1.69998 1.40391 1.23140 1.14032 0.85883 0.80047 0.79017 0.79180 1.19601 1.20312 1.19500 1.21073 0.98820 0.93059 0.81496 0.87636 1.22623 0.80529 0.74818 0.86756 1.90641 1.62789 1.55697 1.34499 1.84830 1.28313 1.68005 1.47286 1.21972 1.04193 0.91584 0.98495 0.92586 0.92658 0.92968 0.86426 0.91864 0.92226 0.89348 0.86707 0.87102 0.87160 0.85053 0.91882 0.74729 0.88084 0.91206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.44 37.16 0.31 -1.53 16 2 C -0.08 -1.18 3.19 -90.57 -0.29 -1.47 16 3 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 4 C -0.14 -2.37 5.62 -26.38 -0.15 -2.52 16 5 C 0.12 2.00 5.27 -3.49 -0.02 1.98 16 6 N -0.60 -11.13 2.93 -167.50 -0.49 -11.62 16 7 C 0.59 12.53 6.01 -12.47 -0.07 12.45 16 8 O -0.53 -12.16 12.40 -20.34 -0.25 -12.42 16 9 C -0.21 -4.31 4.28 -104.81 -0.45 -4.76 16 10 C -0.03 -0.58 9.78 -39.20 -0.38 -0.96 16 11 C -0.22 -3.55 10.03 -39.61 -0.40 -3.95 16 12 C -0.06 -0.94 10.03 -39.53 -0.40 -1.34 16 13 C -0.24 -4.59 9.12 -39.44 -0.36 -4.95 16 14 C 0.18 3.90 5.43 -38.60 -0.21 3.69 16 15 O -0.15 -3.69 7.32 0.81 0.01 -3.68 16 16 C -0.40 -9.58 9.00 30.90 0.28 -9.30 16 17 H 0.09 2.04 5.34 -52.48 -0.28 1.76 16 18 C 0.05 1.19 5.49 -17.51 -0.10 1.09 16 19 N -0.84 -21.23 13.66 55.48 0.76 -20.48 16 20 Si 0.93 18.52 29.55 -169.99 -5.02 13.50 16 21 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 22 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 23 H -0.27 -5.20 7.11 56.52 0.40 -4.79 16 24 C 0.16 2.84 2.87 -68.76 -0.20 2.64 16 25 H 0.11 1.68 6.70 -51.93 -0.35 1.33 16 26 C 0.51 10.26 5.46 36.00 0.20 10.46 16 27 O -0.54 -11.76 17.85 -18.75 -0.33 -12.09 16 28 O -0.48 -9.85 9.87 -47.74 -0.47 -10.32 16 29 C -0.12 -2.07 4.90 -26.61 -0.13 -2.20 16 30 H 0.06 0.67 4.97 -51.93 -0.26 0.42 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.12 2.48 6.24 -51.93 -0.32 2.16 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.06 0.82 6.69 -51.93 -0.35 0.47 16 36 H 0.09 1.56 5.60 -51.93 -0.29 1.27 16 37 H 0.11 1.87 8.06 -52.48 -0.42 1.45 16 38 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 39 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 40 H 0.13 2.53 5.74 -52.48 -0.30 2.23 16 41 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 42 H 0.40 6.65 9.10 45.56 0.41 7.06 16 43 H 0.10 2.06 8.14 -51.93 -0.42 1.64 16 44 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 351.52 15.07 5.30 5.30 Total: -1.00 -29.62 351.52 -7.55 -37.17 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: -4.67 Total: 15.30 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -2.36 Total: -0.67 kcal Atomic # 7 Polarization: -32.36 SS G_CDS: 0.27 Total: -32.09 kcal Atomic # 8 Polarization: -37.46 SS G_CDS: -1.05 Total: -38.51 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.02 Total: 13.50 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.62 -7.55 -37.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594411789.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.375 kcal (2) G-P(sol) polarization free energy of solvation -29.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds