Wall clock time and date at job start Tue Mar 31 2020 17:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.44727 * 2 1 4 4 C 1.53044 * 109.45775 * 119.96383 * 2 1 3 5 5 C 1.53623 * 109.24194 * 58.53347 * 4 2 1 6 6 N 1.46927 * 108.54099 * 54.85404 * 5 4 2 7 7 C 1.34775 * 120.62963 * 126.37111 * 6 5 4 8 8 O 1.21592 * 120.00502 * 167.98937 * 7 6 5 9 9 C 1.47540 * 119.99857 * 347.98776 * 7 6 5 10 10 C 1.39670 * 120.19621 * 118.04966 * 9 7 6 11 11 C 1.37827 * 119.92058 * 180.02562 * 10 9 7 12 12 C 1.38573 * 120.32214 * 359.97325 * 11 10 9 13 13 C 1.38030 * 120.40131 * 0.04658 * 12 11 10 14 14 C 1.38833 * 120.07329 * 359.95784 * 13 12 11 15 15 O 1.35516 * 120.16250 * 180.30058 * 14 13 12 16 16 C 1.34814 * 116.99853 * 353.05412 * 15 14 13 17 17 H 1.08003 * 119.99936 * 354.03446 * 16 15 14 18 18 C 1.38699 * 120.00308 * 174.03211 * 16 15 14 19 19 N 1.31523 * 119.99541 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00324 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47122 * 60.00512 * 20 18 16 22 22 H 1.48498 * 109.47128 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47238 * 300.00190 * 20 18 16 24 24 C 1.46923 * 118.74259 * 306.09024 * 6 5 4 25 25 H 1.08998 * 109.58738 * 293.93643 * 24 6 5 26 26 C 1.50693 * 109.58773 * 173.64898 * 24 6 5 27 27 O 1.20824 * 119.99984 * 134.75162 * 26 24 6 28 28 O 1.34226 * 120.00356 * 314.75006 * 26 24 6 29 29 C 1.53041 * 109.46059 * 240.03044 * 2 1 3 30 30 H 1.08993 * 109.46901 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46868 * 299.96652 * 1 2 3 32 32 H 1.08992 * 109.46818 * 59.96960 * 1 2 3 33 33 H 1.08999 * 109.49460 * 178.60891 * 4 2 1 34 34 H 1.09001 * 109.49547 * 298.66829 * 4 2 1 35 35 H 1.08998 * 109.74267 * 295.11947 * 5 4 2 36 36 H 1.09000 * 109.66230 * 174.54468 * 5 4 2 37 37 H 1.08008 * 120.03914 * 359.97438 * 10 9 7 38 38 H 1.07994 * 119.84145 * 179.97438 * 11 10 9 39 39 H 1.08000 * 119.80181 * 180.02562 * 12 11 10 40 40 H 1.08003 * 119.95984 * 179.97438 * 13 12 11 41 41 H 0.97004 * 119.99973 * 179.97438 * 19 18 16 42 42 H 0.96699 * 117.00695 * 179.97438 * 28 26 24 43 43 H 1.08998 * 109.49464 * 181.39144 * 29 2 1 44 44 H 1.09004 * 109.49349 * 61.29820 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7207 1.2502 5 6 1.4947 -2.1569 1.2643 6 7 1.8626 -2.8088 0.0001 7 6 2.5157 -3.9878 0.0001 8 8 2.6229 -4.6235 -1.0309 9 6 3.1006 -4.5071 1.2511 10 6 2.6543 -5.7178 1.7857 11 6 3.2043 -6.1973 2.9550 12 6 4.1995 -5.4842 3.6040 13 6 4.6502 -4.2860 3.0877 14 6 4.1078 -3.7876 1.9109 15 8 4.5532 -2.6144 1.3992 16 6 5.4205 -1.9084 2.1520 17 1 5.6553 -2.2346 3.1545 18 6 6.0113 -0.7630 1.6393 19 7 5.7249 -0.3656 0.4187 20 14 7.2135 0.2149 2.6821 21 1 8.3645 -0.6480 3.0510 22 1 7.6999 1.3861 1.9096 23 1 6.5315 0.6842 3.9149 24 6 1.4997 -2.1542 -1.2642 25 1 0.4148 -2.1370 -1.3685 26 6 2.1061 -2.9113 -2.4174 27 8 1.4407 -3.1570 -3.3955 28 8 3.3856 -3.3127 -2.3581 29 6 2.0399 -0.7208 -1.2500 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5133 0.8902 32 1 -0.3633 0.5143 -0.8897 33 1 3.1296 -0.7427 1.2384 34 1 1.6963 -0.1930 2.1399 35 1 0.4093 -2.1377 1.3631 36 1 1.9301 -2.7063 2.0990 37 1 1.8785 -6.2772 1.2838 38 1 2.8579 -7.1334 3.3674 39 1 4.6248 -5.8680 4.5195 40 1 5.4259 -3.7359 3.5996 41 1 6.1378 0.4356 0.0601 42 1 3.7302 -3.7954 -3.1218 43 1 3.1296 -0.7428 -1.2382 44 1 1.6958 -0.1935 -2.1398 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594411789.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:39 Heat of formation + Delta-G solvation = -130.755275 kcal Electronic energy + Delta-G solvation = -31370.074165 eV Core-core repulsion = 27252.969184 eV Total energy + Delta-G solvation = -4117.104981 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.27163 -40.90192 -39.80998 -38.92845 -37.87777 -36.94752 -34.70369 -34.16942 -32.93717 -31.68460 -30.54924 -28.62148 -27.24796 -26.48494 -25.10522 -24.37388 -23.12323 -22.67758 -21.21266 -19.87572 -19.76450 -19.18227 -18.62780 -18.03919 -17.43036 -16.87078 -16.65070 -16.36994 -16.15280 -15.79601 -15.72397 -15.64515 -15.24642 -15.21752 -14.84000 -14.60883 -14.34046 -14.26632 -13.92708 -13.64963 -13.46522 -12.99333 -12.92292 -12.76523 -12.60358 -12.49750 -12.37003 -12.23403 -12.12145 -12.08687 -11.95809 -11.66635 -11.42299 -11.33591 -11.26852 -10.68083 -10.65185 -9.79273 -9.54217 -8.96451 -8.34356 -6.00133 0.31008 0.74939 1.12968 1.41560 1.48212 1.52521 1.66935 2.06837 2.19951 2.20431 2.87185 3.22233 3.44706 3.59434 3.73631 3.86374 3.89505 4.12759 4.15464 4.18354 4.31398 4.35571 4.43423 4.60721 4.62651 4.66414 4.67852 4.70940 4.88812 4.99792 5.04635 5.12627 5.15775 5.20055 5.23347 5.35118 5.44329 5.50240 5.58429 5.62557 5.64707 5.74665 5.82968 6.08159 6.18296 6.34814 7.01089 7.08437 7.13414 7.82921 8.82204 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.009311 B = 0.006906 C = 0.005080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3006.623861 B = 4053.439202 C = 5510.994567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.074 4.074 3 H 0.074 0.926 4 C -0.140 4.140 5 C 0.123 3.877 6 N -0.592 5.592 7 C 0.578 3.422 8 O -0.557 6.557 9 C -0.224 4.224 10 C -0.039 4.039 11 C -0.197 4.197 12 C -0.048 4.048 13 C -0.249 4.249 14 C 0.155 3.845 15 O -0.184 6.184 16 C -0.410 4.410 17 H 0.097 0.903 18 C 0.003 3.997 19 N -0.884 5.884 20 Si 0.996 3.004 21 H -0.269 1.269 22 H -0.280 1.280 23 H -0.258 1.258 24 C 0.159 3.841 25 H 0.133 0.867 26 C 0.505 3.495 27 O -0.563 6.563 28 O -0.493 6.493 29 C -0.115 4.115 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.073 0.927 37 H 0.132 0.868 38 H 0.153 0.847 39 H 0.150 0.850 40 H 0.128 0.872 41 H 0.267 0.733 42 H 0.406 0.594 43 H 0.054 0.946 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.418 -0.498 5.719 10.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.093 4.093 3 H 0.093 0.907 4 C -0.178 4.178 5 C 0.002 3.998 6 N -0.326 5.326 7 C 0.370 3.630 8 O -0.437 6.437 9 C -0.228 4.228 10 C -0.058 4.058 11 C -0.215 4.215 12 C -0.066 4.066 13 C -0.268 4.268 14 C 0.101 3.899 15 O -0.088 6.088 16 C -0.486 4.486 17 H 0.114 0.886 18 C -0.198 4.198 19 N -0.519 5.519 20 Si 0.818 3.182 21 H -0.194 1.194 22 H -0.205 1.205 23 H -0.183 1.183 24 C 0.055 3.945 25 H 0.151 0.849 26 C 0.351 3.649 27 O -0.456 6.456 28 O -0.302 6.302 29 C -0.154 4.154 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.114 0.886 36 H 0.092 0.908 37 H 0.149 0.851 38 H 0.170 0.830 39 H 0.168 0.832 40 H 0.145 0.855 41 H 0.076 0.924 42 H 0.265 0.735 43 H 0.073 0.927 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.665 -0.352 4.899 9.960 hybrid contribution 1.446 0.179 -0.430 1.519 sum -7.219 -0.174 4.470 8.492 Atomic orbital electron populations 1.21948 0.93006 1.02277 1.03117 1.20918 0.96970 0.98774 0.92633 0.90721 1.22108 1.03088 0.94463 0.98179 1.21888 1.00181 0.93735 0.83988 1.47908 1.57492 1.20478 1.06705 1.18406 0.75892 0.80381 0.88365 1.90608 1.60523 1.58505 1.34112 1.18880 1.04373 1.00264 0.99269 1.20974 0.97935 0.91627 0.95242 1.21012 1.00907 1.02585 0.97019 1.21341 0.94206 0.92204 0.98866 1.21301 1.05936 1.00499 0.99046 1.19629 0.92109 0.86228 0.91926 1.84002 1.54756 1.26524 1.43524 1.21562 1.23027 1.06376 0.97638 0.88602 1.26079 0.98888 0.97514 0.97357 1.70150 1.42136 1.23776 1.15833 0.84954 0.77918 0.77432 0.77916 1.19381 1.20502 1.18259 1.21306 0.99978 0.92923 0.80284 0.84939 1.23110 0.80118 0.74476 0.87197 1.90615 1.62983 1.56610 1.35384 1.84829 1.28993 1.68206 1.48215 1.21880 1.01286 0.91562 1.00640 0.92413 0.90838 0.91463 0.90932 0.90014 0.88614 0.90828 0.85057 0.82965 0.83250 0.85461 0.92352 0.73535 0.92704 0.89180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 8.44 71.98 0.61 -2.43 16 2 C -0.07 -2.14 3.19 -10.76 -0.03 -2.18 16 3 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 4 C -0.14 -4.69 5.62 30.82 0.17 -4.52 16 5 C 0.12 3.98 5.27 86.51 0.46 4.44 16 6 N -0.59 -22.25 2.93 -802.09 -2.35 -24.60 16 7 C 0.58 25.02 6.01 86.70 0.52 25.54 16 8 O -0.56 -26.41 12.40 20.50 0.25 -26.15 16 9 C -0.22 -9.22 4.28 -19.98 -0.09 -9.30 16 10 C -0.04 -1.32 9.78 22.52 0.22 -1.10 16 11 C -0.20 -5.60 10.03 22.25 0.22 -5.38 16 12 C -0.05 -1.45 10.03 22.30 0.22 -1.22 16 13 C -0.25 -9.55 9.12 22.36 0.20 -9.35 16 14 C 0.16 6.87 5.43 22.91 0.12 7.00 16 15 O -0.18 -9.39 7.32 -20.02 -0.15 -9.53 16 16 C -0.41 -20.58 9.00 67.93 0.61 -19.97 16 17 H 0.10 4.48 5.34 -2.91 -0.02 4.46 16 18 C 0.00 0.16 5.49 84.85 0.47 0.63 16 19 N -0.88 -47.23 13.66 21.62 0.30 -46.93 16 20 Si 1.00 38.97 29.55 68.60 2.03 40.99 16 21 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 22 H -0.28 -10.87 7.11 99.48 0.71 -10.17 16 23 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 24 C 0.16 5.64 2.87 44.23 0.13 5.76 16 25 H 0.13 3.98 6.70 -2.39 -0.02 3.97 16 26 C 0.51 20.90 5.46 71.23 0.39 21.29 16 27 O -0.56 -24.56 17.85 21.97 0.39 -24.17 16 28 O -0.49 -21.49 9.87 -43.27 -0.43 -21.91 16 29 C -0.12 -3.90 4.90 30.67 0.15 -3.75 16 30 H 0.06 1.18 4.97 -2.39 -0.01 1.17 16 31 H 0.07 1.29 8.14 -2.39 -0.02 1.28 16 32 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.07 3.21 6.24 -2.39 -0.01 3.19 16 34 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.10 2.39 6.69 -2.39 -0.02 2.37 16 36 H 0.07 2.61 5.60 -2.39 -0.01 2.59 16 37 H 0.13 3.97 8.06 -2.91 -0.02 3.94 16 38 H 0.15 3.16 8.06 -2.91 -0.02 3.13 16 39 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 40 H 0.13 4.91 5.74 -2.91 -0.02 4.89 16 41 H 0.27 13.56 8.31 -92.71 -0.77 12.79 16 42 H 0.41 14.60 9.10 -74.06 -0.67 13.93 16 43 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 44 H 0.09 2.62 8.14 -2.38 -0.02 2.60 16 Total: -1.00 -68.47 351.52 4.81 -63.66 By element: Atomic # 1 Polarization: 42.79 SS G_CDS: 0.38 Total: 43.17 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: 4.38 Total: 5.48 kcal Atomic # 7 Polarization: -69.48 SS G_CDS: -2.05 Total: -71.53 kcal Atomic # 8 Polarization: -81.84 SS G_CDS: 0.07 Total: -81.77 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 2.03 Total: 40.99 kcal Total: -68.47 4.81 -63.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594411789.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.096 kcal (2) G-P(sol) polarization free energy of solvation -68.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds