Wall clock time and date at job start Tue Mar 31 2020 17:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46156 * 2 1 4 4 C 1.53042 * 109.44873 * 240.03087 * 2 1 3 5 5 C 1.52758 * 109.38374 * 301.22561 * 4 2 1 6 6 N 1.46921 * 109.00890 * 305.59210 * 5 4 2 7 7 C 1.34785 * 120.62881 * 233.58421 * 6 5 4 8 8 O 1.21588 * 120.00244 * 176.81084 * 7 6 5 9 9 C 1.47536 * 119.99662 * 356.81275 * 7 6 5 10 10 C 1.39671 * 120.19716 * 337.08987 * 9 7 6 11 11 C 1.37834 * 119.91559 * 179.72296 * 10 9 7 12 12 C 1.38568 * 120.32314 * 0.56109 * 11 10 9 13 13 C 1.38022 * 120.40440 * 359.71421 * 12 11 10 14 14 C 1.38837 * 120.07002 * 0.02562 * 13 12 11 15 15 O 1.35524 * 120.16019 * 179.97438 * 14 13 12 16 16 C 1.34816 * 116.99923 * 354.37725 * 15 14 13 17 17 H 1.08000 * 120.00234 * 5.08809 * 16 15 14 18 18 C 1.38698 * 119.99891 * 185.09904 * 16 15 14 19 19 N 1.31514 * 119.99912 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00044 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47182 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47389 * 119.99778 * 20 18 16 23 23 H 1.48497 * 109.47274 * 239.99914 * 20 18 16 24 24 C 1.46923 * 118.74442 * 53.30345 * 6 5 4 25 25 H 1.09006 * 109.58531 * 66.43242 * 24 6 5 26 26 C 1.50692 * 109.59118 * 186.85899 * 24 6 5 27 27 O 1.20822 * 120.00191 * 64.52134 * 26 24 6 28 28 O 1.34232 * 120.00186 * 244.52809 * 26 24 6 29 29 C 1.53042 * 109.46369 * 119.97038 * 2 1 3 30 30 H 1.08995 * 109.46743 * 300.02982 * 1 2 3 31 31 H 1.08997 * 109.47067 * 60.02633 * 1 2 3 32 32 H 1.08995 * 109.47235 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.49530 * 61.30334 * 4 2 1 34 34 H 1.09003 * 109.49735 * 181.39877 * 4 2 1 35 35 H 1.08998 * 109.51327 * 185.70431 * 5 4 2 36 36 H 1.09005 * 109.43137 * 65.42396 * 5 4 2 37 37 H 1.07994 * 120.04148 * 0.02562 * 10 9 7 38 38 H 1.07999 * 119.83451 * 180.25848 * 11 10 9 39 39 H 1.08002 * 119.79724 * 179.74831 * 12 11 10 40 40 H 1.08000 * 119.96775 * 179.97438 * 13 12 11 41 41 H 0.97008 * 120.00080 * 179.97438 * 19 18 16 42 42 H 0.96703 * 117.00143 * 180.02562 * 28 26 24 43 43 H 1.09004 * 109.49477 * 298.69066 * 29 2 1 44 44 H 1.08997 * 109.52868 * 178.60653 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7209 -1.2501 5 6 1.5040 -2.1514 -1.2642 6 7 1.8619 -2.8089 0.0000 7 6 2.5157 -3.9876 -0.0001 8 8 2.8575 -4.4932 1.0515 9 6 2.8164 -4.6642 -1.2762 10 6 2.0573 -4.3856 -2.4150 11 6 2.3470 -5.0168 -3.6056 12 6 3.3813 -5.9363 -3.6764 13 6 4.1363 -6.2259 -2.5578 14 6 3.8623 -5.5958 -1.3514 15 8 4.6021 -5.8791 -0.2518 16 6 5.5134 -6.8662 -0.3650 17 1 5.6855 -7.3352 -1.3225 18 6 6.2298 -7.2796 0.7483 19 7 6.0206 -6.7083 1.9143 20 14 7.4920 -8.6478 0.5917 21 1 7.5371 -9.1209 -0.8151 22 1 8.8290 -8.1353 0.9852 23 1 7.1128 -9.7752 1.4807 24 6 1.4993 -2.1541 1.2643 25 1 0.4144 -2.1344 1.3675 26 6 2.1057 -2.9113 2.4175 27 8 3.3066 -2.9717 2.5358 28 8 1.3117 -3.5187 3.3132 29 6 2.0400 -0.7208 1.2500 30 1 -0.3632 0.5143 0.8897 31 1 -0.3633 0.5134 -0.8902 32 1 -0.3633 -1.0276 0.0005 33 1 1.6955 -0.1935 -2.1398 34 1 3.1293 -0.7431 -1.2385 35 1 1.9456 -2.6973 -2.0979 36 1 0.4194 -2.1315 -1.3714 37 1 1.2476 -3.6728 -2.3640 38 1 1.7619 -4.7972 -4.4864 39 1 3.5983 -6.4289 -4.6127 40 1 4.9404 -6.9440 -2.6209 41 1 6.5214 -6.9977 2.6931 42 1 1.7467 -3.9919 4.0358 43 1 1.6961 -0.1934 2.1398 44 1 3.1296 -0.7431 1.2387 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594411790.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:44 Heat of formation + Delta-G solvation = -78.627739 kcal Electronic energy + Delta-G solvation = -30428.108007 eV Core-core repulsion = 26313.263446 eV Total energy + Delta-G solvation = -4114.844561 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.95794 -39.28656 -38.43826 -37.23528 -36.48284 -35.33084 -33.59048 -32.33837 -32.01399 -30.03856 -29.04004 -27.81226 -25.60693 -25.38864 -24.19643 -22.84731 -22.04035 -20.79246 -20.01069 -18.54289 -18.16227 -17.51922 -16.92701 -16.53293 -15.96808 -15.63408 -15.08436 -15.01140 -14.76759 -14.62805 -14.37193 -14.15929 -13.79239 -13.77208 -13.57394 -13.24026 -13.04422 -12.76195 -12.52412 -12.23730 -12.09699 -11.85165 -11.61851 -11.39482 -11.26704 -11.13681 -11.01849 -10.93784 -10.88492 -10.79302 -10.71224 -10.46112 -9.96790 -9.72670 -9.51685 -8.87881 -8.77217 -8.31498 -8.19807 -7.32083 -6.42526 -4.03480 1.67809 2.26979 2.68339 3.11969 3.13013 3.18832 3.32644 3.52438 3.70287 3.93804 4.51466 4.63517 4.70175 4.79865 4.94593 5.05426 5.10754 5.16710 5.23045 5.31656 5.42684 5.49348 5.51332 5.56392 5.61923 5.69506 5.76918 5.80963 5.90053 5.91290 6.01478 6.08543 6.10433 6.15021 6.30034 6.52770 6.60597 6.76806 6.89797 7.02258 7.21406 7.22754 7.27776 7.66697 7.78124 7.95402 8.57801 8.92650 8.97074 9.66803 10.70502 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.012845 B = 0.004793 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.266340 B = 5840.633547 C = 7482.787076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.088 4.088 3 H 0.076 0.924 4 C -0.135 4.135 5 C 0.067 3.933 6 N -0.610 5.610 7 C 0.556 3.444 8 O -0.478 6.478 9 C -0.221 4.221 10 C -0.070 4.070 11 C -0.230 4.230 12 C -0.051 4.051 13 C -0.236 4.236 14 C 0.189 3.811 15 O -0.127 6.127 16 C -0.403 4.403 17 H 0.095 0.905 18 C 0.044 3.956 19 N -0.828 5.828 20 Si 0.941 3.059 21 H -0.265 1.265 22 H -0.275 1.275 23 H -0.275 1.275 24 C 0.164 3.836 25 H 0.095 0.905 26 C 0.483 3.517 27 O -0.478 6.478 28 O -0.527 6.527 29 C -0.120 4.120 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.136 0.864 36 H 0.069 0.931 37 H 0.146 0.854 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.132 0.868 41 H 0.271 0.729 42 H 0.409 0.591 43 H 0.076 0.924 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.240 11.426 -6.274 17.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.107 4.107 3 H 0.095 0.905 4 C -0.173 4.173 5 C -0.054 4.054 6 N -0.350 5.350 7 C 0.348 3.652 8 O -0.351 6.351 9 C -0.226 4.226 10 C -0.088 4.088 11 C -0.250 4.250 12 C -0.070 4.070 13 C -0.255 4.255 14 C 0.129 3.871 15 O -0.025 6.025 16 C -0.479 4.479 17 H 0.112 0.888 18 C -0.164 4.164 19 N -0.458 5.458 20 Si 0.765 3.235 21 H -0.190 1.190 22 H -0.200 1.200 23 H -0.200 1.200 24 C 0.059 3.941 25 H 0.112 0.888 26 C 0.324 3.676 27 O -0.363 6.363 28 O -0.340 6.340 29 C -0.159 4.159 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.153 0.847 36 H 0.087 0.913 37 H 0.163 0.837 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.149 0.851 41 H 0.081 0.919 42 H 0.267 0.733 43 H 0.095 0.905 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.749 11.377 -5.429 16.567 hybrid contribution 0.947 -0.989 0.281 1.398 sum -9.802 10.388 -5.148 15.182 Atomic orbital electron populations 1.21984 0.95095 1.02299 1.01810 1.21069 0.95940 0.99280 0.94366 0.90529 1.21953 1.01887 0.95681 0.97756 1.23015 1.00228 0.93973 0.88176 1.47912 1.60902 1.21471 1.04706 1.18451 0.76717 0.79992 0.90049 1.90945 1.49085 1.63667 1.31418 1.18608 1.03098 1.07159 0.93737 1.21593 0.98362 0.97006 0.91791 1.20504 1.02898 1.03929 0.97624 1.20913 0.93807 0.95222 0.97008 1.21152 1.05014 1.06567 0.92783 1.19227 0.88911 0.91319 0.87620 1.84135 1.41905 1.46946 1.29474 1.21515 1.16076 1.13205 0.97112 0.88798 1.25405 0.98291 0.98449 0.94234 1.70158 1.37842 1.38459 0.99386 0.85662 0.79383 0.79529 0.78909 1.18955 1.20018 1.20002 1.20484 0.99714 0.91713 0.82213 0.88771 1.22371 0.85733 0.77115 0.82428 1.90794 1.15892 1.56515 1.73069 1.84358 1.44802 1.65452 1.39386 1.21922 1.02680 0.92497 0.98772 0.92569 0.92407 0.92059 0.90540 0.91033 0.84698 0.91252 0.83713 0.87113 0.87182 0.85072 0.91909 0.73259 0.90532 0.89922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 8.43 37.16 0.31 -0.93 16 2 C -0.09 -0.86 3.19 -90.58 -0.29 -1.15 16 3 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 4 C -0.13 -1.41 5.61 -26.83 -0.15 -1.56 16 5 C 0.07 0.82 4.28 -3.94 -0.02 0.81 16 6 N -0.61 -10.41 2.98 -168.02 -0.50 -10.91 16 7 C 0.56 12.63 7.35 -12.47 -0.09 12.54 16 8 O -0.48 -13.23 11.02 -27.30 -0.30 -13.53 16 9 C -0.22 -4.85 5.69 -104.81 -0.60 -5.45 16 10 C -0.07 -1.17 7.61 -39.19 -0.30 -1.47 16 11 C -0.23 -3.64 10.02 -39.61 -0.40 -4.04 16 12 C -0.05 -0.89 10.03 -39.54 -0.40 -1.28 16 13 C -0.24 -5.08 9.16 -39.44 -0.36 -5.45 16 14 C 0.19 4.75 6.63 -38.60 -0.26 4.49 16 15 O -0.13 -3.81 8.09 -19.70 -0.16 -3.97 16 16 C -0.40 -11.63 9.49 30.90 0.29 -11.33 16 17 H 0.09 2.45 5.21 -52.49 -0.27 2.18 16 18 C 0.04 1.26 5.49 -17.52 -0.10 1.17 16 19 N -0.83 -25.63 13.67 55.48 0.76 -24.87 16 20 Si 0.94 20.94 29.55 -169.99 -5.02 15.91 16 21 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 22 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 23 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 24 C 0.16 2.55 2.88 -68.76 -0.20 2.36 16 25 H 0.09 1.24 6.69 -51.93 -0.35 0.89 16 26 C 0.48 9.56 4.92 36.00 0.18 9.74 16 27 O -0.48 -11.86 15.22 -26.99 -0.41 -12.27 16 28 O -0.53 -9.08 13.42 -41.44 -0.56 -9.64 16 29 C -0.12 -1.54 4.84 -26.61 -0.13 -1.67 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.53 4.99 -51.93 -0.26 0.27 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.14 1.73 3.35 -67.55 -0.23 1.51 16 36 H 0.07 0.68 6.64 -51.93 -0.34 0.33 16 37 H 0.15 1.88 4.54 -52.49 -0.24 1.64 16 38 H 0.11 1.38 8.06 -52.49 -0.42 0.95 16 39 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 40 H 0.13 2.81 5.64 -52.49 -0.30 2.51 16 41 H 0.27 7.65 8.31 -40.82 -0.34 7.32 16 42 H 0.41 5.93 9.10 45.56 0.41 6.35 16 43 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.08 1.28 7.88 -51.93 -0.41 0.87 16 LS Contribution 348.21 15.07 5.25 5.25 Total: -1.00 -38.45 348.21 -7.93 -46.39 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -4.50 Total: 10.85 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -2.49 Total: -3.21 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: 0.26 Total: -35.78 kcal Atomic # 8 Polarization: -37.98 SS G_CDS: -1.43 Total: -39.41 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -38.45 -7.93 -46.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594411790.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.241 kcal (2) G-P(sol) polarization free energy of solvation -38.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds