Wall clock time and date at job start Tue Mar 31 2020 17:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46156 * 2 1 4 4 C 1.53042 * 109.44873 * 240.03087 * 2 1 3 5 5 C 1.52758 * 109.38374 * 301.22561 * 4 2 1 6 6 N 1.46921 * 109.00890 * 305.59210 * 5 4 2 7 7 C 1.34785 * 120.62881 * 233.58421 * 6 5 4 8 8 O 1.21588 * 120.00244 * 176.81084 * 7 6 5 9 9 C 1.47536 * 119.99662 * 356.81275 * 7 6 5 10 10 C 1.39671 * 120.19716 * 337.08987 * 9 7 6 11 11 C 1.37834 * 119.91559 * 179.72296 * 10 9 7 12 12 C 1.38568 * 120.32314 * 0.56109 * 11 10 9 13 13 C 1.38022 * 120.40440 * 359.71421 * 12 11 10 14 14 C 1.38837 * 120.07002 * 0.02562 * 13 12 11 15 15 O 1.35524 * 120.16019 * 179.97438 * 14 13 12 16 16 C 1.34816 * 116.99923 * 354.37725 * 15 14 13 17 17 H 1.08000 * 120.00234 * 5.08809 * 16 15 14 18 18 C 1.38698 * 119.99891 * 185.09904 * 16 15 14 19 19 N 1.31514 * 119.99912 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00044 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47182 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47389 * 119.99778 * 20 18 16 23 23 H 1.48497 * 109.47274 * 239.99914 * 20 18 16 24 24 C 1.46923 * 118.74442 * 53.30345 * 6 5 4 25 25 H 1.09006 * 109.58531 * 66.43242 * 24 6 5 26 26 C 1.50692 * 109.59118 * 186.85899 * 24 6 5 27 27 O 1.20822 * 120.00191 * 64.52134 * 26 24 6 28 28 O 1.34232 * 120.00186 * 244.52809 * 26 24 6 29 29 C 1.53042 * 109.46369 * 119.97038 * 2 1 3 30 30 H 1.08995 * 109.46743 * 300.02982 * 1 2 3 31 31 H 1.08997 * 109.47067 * 60.02633 * 1 2 3 32 32 H 1.08995 * 109.47235 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.49530 * 61.30334 * 4 2 1 34 34 H 1.09003 * 109.49735 * 181.39877 * 4 2 1 35 35 H 1.08998 * 109.51327 * 185.70431 * 5 4 2 36 36 H 1.09005 * 109.43137 * 65.42396 * 5 4 2 37 37 H 1.07994 * 120.04148 * 0.02562 * 10 9 7 38 38 H 1.07999 * 119.83451 * 180.25848 * 11 10 9 39 39 H 1.08002 * 119.79724 * 179.74831 * 12 11 10 40 40 H 1.08000 * 119.96775 * 179.97438 * 13 12 11 41 41 H 0.97008 * 120.00080 * 179.97438 * 19 18 16 42 42 H 0.96703 * 117.00143 * 180.02562 * 28 26 24 43 43 H 1.09004 * 109.49477 * 298.69066 * 29 2 1 44 44 H 1.08997 * 109.52868 * 178.60653 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7209 -1.2501 5 6 1.5040 -2.1514 -1.2642 6 7 1.8619 -2.8089 0.0000 7 6 2.5157 -3.9876 -0.0001 8 8 2.8575 -4.4932 1.0515 9 6 2.8164 -4.6642 -1.2762 10 6 2.0573 -4.3856 -2.4150 11 6 2.3470 -5.0168 -3.6056 12 6 3.3813 -5.9363 -3.6764 13 6 4.1363 -6.2259 -2.5578 14 6 3.8623 -5.5958 -1.3514 15 8 4.6021 -5.8791 -0.2518 16 6 5.5134 -6.8662 -0.3650 17 1 5.6855 -7.3352 -1.3225 18 6 6.2298 -7.2796 0.7483 19 7 6.0206 -6.7083 1.9143 20 14 7.4920 -8.6478 0.5917 21 1 7.5371 -9.1209 -0.8151 22 1 8.8290 -8.1353 0.9852 23 1 7.1128 -9.7752 1.4807 24 6 1.4993 -2.1541 1.2643 25 1 0.4144 -2.1344 1.3675 26 6 2.1057 -2.9113 2.4175 27 8 3.3066 -2.9717 2.5358 28 8 1.3117 -3.5187 3.3132 29 6 2.0400 -0.7208 1.2500 30 1 -0.3632 0.5143 0.8897 31 1 -0.3633 0.5134 -0.8902 32 1 -0.3633 -1.0276 0.0005 33 1 1.6955 -0.1935 -2.1398 34 1 3.1293 -0.7431 -1.2385 35 1 1.9456 -2.6973 -2.0979 36 1 0.4194 -2.1315 -1.3714 37 1 1.2476 -3.6728 -2.3640 38 1 1.7619 -4.7972 -4.4864 39 1 3.5983 -6.4289 -4.6127 40 1 4.9404 -6.9440 -2.6209 41 1 6.5214 -6.9977 2.6931 42 1 1.7467 -3.9919 4.0358 43 1 1.6961 -0.1934 2.1398 44 1 3.1296 -0.7431 1.2387 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594411790.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:43 Heat of formation + Delta-G solvation = -107.122501 kcal Electronic energy + Delta-G solvation = -30429.343633 eV Core-core repulsion = 26313.263446 eV Total energy + Delta-G solvation = -4116.080187 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.39257 -40.94490 -39.91342 -38.72984 -38.15490 -36.92927 -34.89027 -34.34745 -33.26704 -31.44561 -30.66925 -28.74320 -27.44458 -26.70406 -25.39591 -24.28740 -23.60052 -22.27915 -21.33355 -20.03634 -19.76796 -18.97571 -18.54061 -18.15606 -17.42890 -17.07277 -16.60462 -16.38314 -16.23556 -16.07411 -15.91048 -15.54675 -15.37368 -14.99534 -14.93817 -14.67254 -14.42367 -14.23994 -14.11874 -13.70097 -13.49841 -13.09353 -12.98960 -12.87501 -12.67653 -12.53071 -12.37195 -12.20638 -12.14861 -12.04969 -11.85423 -11.67304 -11.41287 -11.31807 -11.11179 -10.85865 -10.45049 -9.78001 -9.60536 -9.03546 -8.46772 -6.19083 0.10859 0.69321 1.21856 1.27660 1.39072 1.48349 1.85232 2.09089 2.12250 2.18623 2.82898 3.15952 3.42890 3.58618 3.77606 3.85201 3.88805 3.97724 4.07401 4.11624 4.26146 4.36523 4.39389 4.49253 4.59892 4.60221 4.66767 4.69797 4.89363 4.92710 4.95309 5.04059 5.05448 5.11839 5.17634 5.29536 5.38197 5.45696 5.50482 5.58022 5.58974 5.68914 5.76611 5.91730 6.16499 6.33891 6.91491 7.05654 7.33165 7.77850 8.73534 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.012845 B = 0.004793 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.266340 B = 5840.633547 C = 7482.787076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.081 4.081 3 H 0.095 0.905 4 C -0.132 4.132 5 C 0.056 3.944 6 N -0.601 5.601 7 C 0.540 3.460 8 O -0.543 6.543 9 C -0.239 4.239 10 C -0.059 4.059 11 C -0.195 4.195 12 C -0.041 4.041 13 C -0.257 4.257 14 C 0.146 3.854 15 O -0.197 6.197 16 C -0.425 4.425 17 H 0.107 0.893 18 C -0.025 4.025 19 N -0.906 5.906 20 Si 1.024 2.976 21 H -0.243 1.243 22 H -0.269 1.269 23 H -0.269 1.269 24 C 0.162 3.838 25 H 0.132 0.868 26 C 0.477 3.523 27 O -0.541 6.541 28 O -0.521 6.521 29 C -0.117 4.117 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.119 0.881 34 H 0.041 0.959 35 H 0.132 0.868 36 H 0.115 0.885 37 H 0.195 0.805 38 H 0.172 0.828 39 H 0.155 0.845 40 H 0.120 0.880 41 H 0.269 0.731 42 H 0.416 0.584 43 H 0.097 0.903 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.979 13.418 -11.224 23.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.100 4.100 3 H 0.113 0.887 4 C -0.170 4.170 5 C -0.062 4.062 6 N -0.338 5.338 7 C 0.332 3.668 8 O -0.422 6.422 9 C -0.243 4.243 10 C -0.076 4.076 11 C -0.213 4.213 12 C -0.059 4.059 13 C -0.277 4.277 14 C 0.091 3.909 15 O -0.100 6.100 16 C -0.501 4.501 17 H 0.125 0.875 18 C -0.224 4.224 19 N -0.542 5.542 20 Si 0.842 3.158 21 H -0.166 1.166 22 H -0.194 1.194 23 H -0.194 1.194 24 C 0.058 3.942 25 H 0.150 0.850 26 C 0.320 3.680 27 O -0.429 6.429 28 O -0.333 6.333 29 C -0.156 4.156 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.076 0.924 33 H 0.137 0.863 34 H 0.060 0.940 35 H 0.149 0.851 36 H 0.133 0.867 37 H 0.212 0.788 38 H 0.189 0.811 39 H 0.172 0.828 40 H 0.138 0.862 41 H 0.077 0.923 42 H 0.276 0.724 43 H 0.115 0.885 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -14.582 13.431 -10.482 22.425 hybrid contribution 1.746 -1.356 1.499 2.671 sum -12.835 12.076 -8.983 19.780 Atomic orbital electron populations 1.21967 0.92741 1.02526 1.03542 1.21097 0.97682 0.99396 0.91788 0.88715 1.21978 1.00147 0.94870 0.99999 1.23408 1.02919 0.94499 0.85391 1.47983 1.58932 1.19837 1.07081 1.18863 0.76849 0.81511 0.89612 1.90923 1.51754 1.65964 1.33540 1.19110 1.03057 1.06650 0.95504 1.22227 0.98229 0.97036 0.90138 1.21286 1.00901 1.00246 0.98871 1.21470 0.92668 0.94835 0.96919 1.21284 1.06165 1.06963 0.93249 1.20093 0.89986 0.92778 0.88038 1.84143 1.44521 1.49179 1.32157 1.22047 1.16463 1.13717 0.97901 0.87540 1.26816 1.00764 1.01381 0.93460 1.70375 1.41044 1.42114 1.00673 0.84487 0.75858 0.75538 0.79927 1.16580 1.19412 1.19399 1.20897 1.01345 0.92111 0.79823 0.85041 1.23422 0.85246 0.76240 0.83063 1.90769 1.18757 1.58912 1.74497 1.84335 1.44376 1.65087 1.39524 1.21981 1.00284 0.91263 1.02049 0.91736 0.89991 0.92431 0.86310 0.94033 0.85119 0.86692 0.78845 0.81068 0.82783 0.86212 0.92255 0.72420 0.88469 0.93901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.43 71.98 0.61 -0.93 16 2 C -0.08 -1.27 3.19 -10.77 -0.03 -1.30 16 3 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 4 C -0.13 -2.23 5.61 30.53 0.17 -2.05 16 5 C 0.06 1.14 4.28 86.22 0.37 1.51 16 6 N -0.60 -20.03 2.98 -803.75 -2.39 -22.42 16 7 C 0.54 25.62 7.35 86.69 0.64 26.26 16 8 O -0.54 -32.89 11.02 27.16 0.30 -32.59 16 9 C -0.24 -10.60 5.69 -19.99 -0.11 -10.71 16 10 C -0.06 -1.73 7.61 22.52 0.17 -1.56 16 11 C -0.19 -4.90 10.02 22.25 0.22 -4.68 16 12 C -0.04 -1.25 10.03 22.30 0.22 -1.03 16 13 C -0.26 -11.20 9.16 22.36 0.20 -11.00 16 14 C 0.15 7.74 6.63 22.91 0.15 7.89 16 15 O -0.20 -13.07 8.09 -0.54 0.00 -13.07 16 16 C -0.43 -26.75 9.49 67.93 0.64 -26.11 16 17 H 0.11 6.00 5.21 -2.91 -0.02 5.98 16 18 C -0.03 -1.57 5.49 84.85 0.47 -1.11 16 19 N -0.91 -62.23 13.67 21.62 0.30 -61.94 16 20 Si 1.02 46.15 29.55 68.60 2.03 48.18 16 21 H -0.24 -9.82 7.11 99.48 0.71 -9.11 16 22 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 23 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 24 C 0.16 4.99 2.88 44.23 0.13 5.12 16 25 H 0.13 3.08 6.69 -2.38 -0.02 3.07 16 26 C 0.48 20.17 4.92 71.23 0.35 20.52 16 27 O -0.54 -29.67 15.22 29.86 0.45 -29.21 16 28 O -0.52 -19.05 13.42 -49.35 -0.66 -19.71 16 29 C -0.12 -2.90 4.84 30.67 0.15 -2.75 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.08 0.51 8.14 -2.39 -0.02 0.50 16 32 H 0.06 0.64 4.99 -2.39 -0.01 0.63 16 33 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.13 2.71 3.35 -17.06 -0.06 2.66 16 36 H 0.12 1.41 6.64 -2.38 -0.02 1.39 16 37 H 0.20 3.75 4.54 -2.91 -0.01 3.74 16 38 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 39 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 40 H 0.12 5.35 5.64 -2.91 -0.02 5.33 16 41 H 0.27 16.92 8.31 -92.70 -0.77 16.15 16 42 H 0.42 13.48 9.10 -74.06 -0.67 12.80 16 43 H 0.10 1.97 8.14 -2.38 -0.02 1.95 16 44 H 0.04 1.40 7.88 -2.39 -0.02 1.38 16 Total: -1.00 -103.14 348.21 4.71 -98.43 By element: Atomic # 1 Polarization: 33.91 SS G_CDS: 0.35 Total: 34.26 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: 4.35 Total: -1.93 kcal Atomic # 7 Polarization: -82.26 SS G_CDS: -2.10 Total: -84.36 kcal Atomic # 8 Polarization: -94.67 SS G_CDS: 0.09 Total: -94.58 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -103.14 4.71 -98.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594411790.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.690 kcal (2) G-P(sol) polarization free energy of solvation -103.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds