Wall clock time and date at job start Tue Mar 31 2020 18:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35705 * 117.00053 * 2 1 4 4 C 1.38767 * 119.64067 * 0.02562 * 3 2 1 5 5 C 1.37662 * 119.81466 * 179.90550 * 4 3 2 6 6 C 1.39509 * 119.72438 * 0.26519 * 5 4 3 7 7 C 1.47460 * 119.80701 * 180.02562 * 6 5 4 8 8 O 1.21509 * 119.99890 * 185.26961 * 7 6 5 9 9 O 1.34745 * 120.00154 * 5.26854 * 7 6 5 10 10 C 1.40483 * 120.38391 * 0.03892 * 6 5 4 11 11 C 1.37143 * 119.46696 * 359.45709 * 10 6 5 12 12 C 1.50832 * 122.37674 * 180.80056 * 11 10 6 13 13 N 1.46675 * 109.70596 * 348.42172 * 12 11 10 14 14 C 1.34777 * 121.35144 * 224.34577 * 13 12 11 15 15 O 1.21280 * 119.99682 * 3.19817 * 14 13 12 16 16 C 1.50696 * 119.99629 * 183.20253 * 14 13 12 17 17 H 1.08995 * 109.47424 * 305.26893 * 16 14 13 18 18 C 1.53007 * 109.47191 * 65.27142 * 16 14 13 19 19 C 1.50708 * 109.46913 * 185.26657 * 16 14 13 20 20 H 1.08004 * 119.99623 * 1.27501 * 19 16 14 21 21 C 1.37877 * 120.00245 * 181.27096 * 19 16 14 22 22 N 1.31506 * 119.99895 * 155.22558 * 21 19 16 23 23 Si 1.86796 * 119.99786 * 334.95563 * 21 19 16 24 24 H 1.48497 * 109.47262 * 270.26969 * 23 21 19 25 25 H 1.48501 * 109.47660 * 30.27209 * 23 21 19 26 26 H 1.48505 * 109.47148 * 150.27149 * 23 21 19 27 27 C 1.47239 * 117.29742 * 44.61820 * 13 12 11 28 28 C 1.50603 * 117.59372 * 178.78421 * 10 6 5 29 29 H 1.08993 * 109.47413 * 59.99722 * 1 2 3 30 30 H 1.09000 * 109.46903 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47244 * 299.99679 * 1 2 3 32 32 H 1.07998 * 120.09046 * 359.92514 * 4 3 2 33 33 H 1.08008 * 120.13447 * 180.24234 * 5 4 3 34 34 H 0.96698 * 117.00032 * 179.97438 * 9 7 6 35 35 H 1.09004 * 109.43200 * 228.35443 * 12 11 10 36 36 H 1.09002 * 109.39347 * 108.47443 * 12 11 10 37 37 H 1.09001 * 109.46804 * 305.11599 * 18 16 14 38 38 H 1.08998 * 109.47076 * 65.11896 * 18 16 14 39 39 H 1.09005 * 109.46564 * 185.11682 * 18 16 14 40 40 H 0.97000 * 120.00221 * 354.70499 * 22 21 19 41 41 H 1.09002 * 109.78325 * 55.25369 * 27 13 12 42 42 H 1.08999 * 109.78016 * 176.06936 * 27 13 12 43 43 H 1.08998 * 109.19190 * 280.87032 * 28 10 6 44 44 H 1.09001 * 109.19206 * 40.19175 * 28 10 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0450 1.2091 0.0000 4 6 1.2820 2.3682 0.0005 5 6 1.9032 3.5966 0.0025 6 6 3.2965 3.6672 -0.0017 7 6 3.9639 4.9821 0.0010 8 8 5.1729 5.0500 -0.0992 9 8 3.2330 6.1084 0.1146 10 6 4.0674 2.4928 -0.0087 11 6 3.4395 1.2736 -0.0001 12 6 4.2022 -0.0277 0.0110 13 7 5.6198 0.2276 -0.2663 14 6 6.3164 -0.5437 -1.1244 15 8 5.7582 -1.4345 -1.7292 16 6 7.7888 -0.2992 -1.3321 17 1 7.9479 0.7410 -1.6162 18 6 8.5430 -0.5946 -0.0341 19 6 8.2985 -1.2022 -2.4258 20 1 7.6194 -1.8701 -2.9349 21 6 9.6317 -1.1757 -2.7764 22 7 10.1856 -2.2292 -3.3354 23 14 10.6490 0.3595 -2.4643 24 1 10.5703 1.2544 -3.6467 25 1 10.1218 1.0687 -1.2708 26 1 12.0640 -0.0240 -2.2272 27 6 6.2524 1.3568 0.4355 28 6 5.5657 2.6420 -0.0412 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.2037 2.3066 -0.0003 33 1 1.3144 4.5021 0.0069 34 1 3.7150 6.9467 0.1119 35 1 3.7973 -0.6919 -0.7526 36 1 4.1029 -0.4971 0.9897 37 1 8.1134 -0.0071 0.7774 38 1 8.4591 -1.6555 0.2015 39 1 9.5937 -0.3315 -0.1565 40 1 9.6785 -3.0505 -3.4312 41 1 6.1210 1.2427 1.5116 42 1 7.3149 1.3921 0.1947 43 1 5.8817 2.8628 -1.0607 44 1 5.8580 3.4651 0.6108 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599496906.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:11 Heat of formation + Delta-G solvation = -122.430395 kcal Electronic energy + Delta-G solvation = -29409.762109 eV Core-core repulsion = 25293.018122 eV Total energy + Delta-G solvation = -4116.743987 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.24525 -40.04426 -39.29944 -37.78742 -36.33319 -35.61827 -33.91961 -32.24045 -31.97878 -30.76155 -29.48757 -27.83544 -25.90536 -24.86202 -24.34827 -23.61982 -22.34841 -21.21323 -20.39690 -18.57741 -18.18267 -17.74721 -17.31175 -17.16530 -16.63352 -16.30105 -15.88753 -15.85036 -15.38192 -15.09839 -14.27185 -14.04277 -14.00473 -13.74186 -13.70735 -13.37925 -13.24739 -13.19457 -12.59218 -12.54733 -12.30580 -12.04733 -11.95045 -11.76334 -11.60659 -11.44919 -11.34962 -11.21595 -10.94740 -10.80166 -10.42664 -10.26647 -10.15365 -9.67107 -8.94684 -8.91952 -8.65775 -8.55364 -8.16085 -8.05740 -6.42057 -3.95318 0.49987 1.02528 2.32389 2.79651 2.90170 3.41385 3.41971 3.47218 3.49599 3.58679 3.61898 4.35286 4.40185 4.55649 4.65081 4.74709 4.81504 4.86837 4.93466 5.09251 5.15953 5.27049 5.33620 5.38034 5.40282 5.62084 5.68989 5.74786 5.82810 5.89971 5.96209 6.06953 6.13317 6.24584 6.28741 6.31420 6.46622 6.49077 6.58326 6.83985 6.98241 7.04595 7.32058 7.71033 7.84368 8.23866 8.53049 9.11158 9.13667 9.69592 10.97225 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.012989 B = 0.003965 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.076516 B = 7060.420974 C = 8759.868922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.304 6.304 3 C 0.175 3.825 4 C -0.232 4.232 5 C -0.018 4.018 6 C -0.178 4.178 7 C 0.527 3.473 8 O -0.506 6.506 9 O -0.517 6.517 10 C 0.040 3.960 11 C -0.133 4.133 12 C 0.164 3.836 13 N -0.630 5.630 14 C 0.534 3.466 15 O -0.534 6.534 16 C 0.008 3.992 17 H 0.042 0.958 18 C -0.145 4.145 19 C -0.599 4.599 20 H 0.075 0.925 21 C 0.038 3.962 22 N -0.896 5.896 23 Si 1.034 2.966 24 H -0.286 1.286 25 H -0.273 1.273 26 H -0.286 1.286 27 C 0.101 3.899 28 C -0.110 4.110 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.058 0.942 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.413 0.587 35 H 0.103 0.897 36 H 0.073 0.927 37 H 0.034 0.966 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.271 0.729 41 H 0.069 0.931 42 H 0.107 0.893 43 H 0.095 0.905 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.945 15.114 12.221 27.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.216 6.216 3 C 0.128 3.872 4 C -0.251 4.251 5 C -0.036 4.036 6 C -0.179 4.179 7 C 0.373 3.627 8 O -0.396 6.396 9 O -0.330 6.330 10 C 0.039 3.961 11 C -0.135 4.135 12 C 0.041 3.959 13 N -0.366 5.366 14 C 0.325 3.675 15 O -0.408 6.408 16 C -0.014 4.014 17 H 0.060 0.940 18 C -0.203 4.203 19 C -0.636 4.636 20 H 0.093 0.907 21 C -0.168 4.168 22 N -0.529 5.529 23 Si 0.862 3.138 24 H -0.213 1.213 25 H -0.198 1.198 26 H -0.212 1.212 27 C -0.022 4.022 28 C -0.147 4.147 29 H 0.077 0.923 30 H 0.122 0.878 31 H 0.077 0.923 32 H 0.156 0.844 33 H 0.158 0.842 34 H 0.271 0.729 35 H 0.121 0.879 36 H 0.091 0.909 37 H 0.053 0.947 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.125 0.875 43 H 0.113 0.887 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -18.529 14.663 11.590 26.319 hybrid contribution -1.716 0.184 0.203 1.738 sum -20.245 14.847 11.794 27.737 Atomic orbital electron populations 1.23163 0.77822 1.04497 1.01542 1.86107 1.21832 1.26566 1.87126 1.19250 0.91456 0.84559 0.91977 1.21093 1.00356 0.91821 1.11818 1.21086 0.92921 0.97816 0.91812 1.18872 0.93585 0.89657 1.15788 1.20764 0.84931 0.84586 0.72425 1.90878 1.15201 1.87322 1.46214 1.84544 1.45115 1.17553 1.85744 1.19414 0.96388 0.89600 0.90678 1.19215 0.90368 0.95983 1.07904 1.19990 0.81324 0.92373 1.02225 1.48376 1.09531 1.32645 1.46068 1.21527 0.90375 0.79730 0.75842 1.90549 1.71397 1.32175 1.46684 1.19165 0.86693 0.98984 0.96544 0.94023 1.22272 1.00494 1.01124 0.96380 1.21871 0.96165 1.24936 1.20647 0.90734 1.25665 0.95330 1.01516 0.94283 1.70777 1.38403 1.01813 1.41943 0.84245 0.76217 0.76509 0.76865 1.21289 1.19836 1.21153 1.22088 0.99294 0.84509 0.96316 1.21496 0.89020 0.99330 1.04875 0.92266 0.87794 0.92319 0.84447 0.84216 0.72881 0.87917 0.90931 0.94730 0.92951 0.92496 0.91853 0.91301 0.87481 0.88706 0.86746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.80 101.05 0.99 1.15 16 2 O -0.30 -3.45 9.64 -18.82 -0.18 -3.63 16 3 C 0.17 2.09 6.66 -38.88 -0.26 1.84 16 4 C -0.23 -2.19 9.00 -39.60 -0.36 -2.55 16 5 C -0.02 -0.17 9.59 -39.32 -0.38 -0.55 16 6 C -0.18 -2.11 5.88 -104.82 -0.62 -2.73 16 7 C 0.53 5.95 8.17 34.49 0.28 6.23 16 8 O -0.51 -6.90 13.80 -19.27 -0.27 -7.16 16 9 O -0.52 -4.02 12.66 -40.61 -0.51 -4.54 16 10 C 0.04 0.55 5.79 -104.22 -0.60 -0.05 16 11 C -0.13 -1.88 5.83 -104.45 -0.61 -2.49 16 12 C 0.16 2.67 5.70 -5.03 -0.03 2.65 16 13 N -0.63 -11.62 2.93 -174.05 -0.51 -12.13 16 14 C 0.53 12.54 7.03 -10.99 -0.08 12.46 16 15 O -0.53 -14.56 15.00 5.56 0.08 -14.48 16 16 C 0.01 0.19 1.36 -92.92 -0.13 0.07 16 17 H 0.04 0.98 6.32 -51.93 -0.33 0.65 16 18 C -0.15 -3.11 8.16 37.16 0.30 -2.80 16 19 C -0.60 -17.64 8.64 -34.44 -0.30 -17.94 16 20 H 0.07 2.49 7.02 -52.48 -0.37 2.12 16 21 C 0.04 1.12 5.21 -17.82 -0.09 1.02 16 22 N -0.90 -28.02 13.69 55.43 0.76 -27.26 16 23 Si 1.03 24.83 26.38 -169.99 -4.48 20.34 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.27 -5.79 5.67 56.52 0.32 -5.47 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 C 0.10 1.52 5.27 -3.47 -0.02 1.51 16 28 C -0.11 -1.57 4.47 -27.76 -0.12 -1.69 16 29 H 0.06 0.33 7.64 -51.93 -0.40 -0.07 16 30 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.29 7.64 -51.93 -0.40 -0.11 16 32 H 0.14 0.89 6.25 -52.49 -0.33 0.56 16 33 H 0.14 1.02 7.59 -52.48 -0.40 0.62 16 34 H 0.41 1.42 9.11 45.56 0.42 1.84 16 35 H 0.10 1.90 6.98 -51.93 -0.36 1.53 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.03 0.60 5.54 -51.93 -0.29 0.31 16 38 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.06 1.21 4.97 -51.93 -0.26 0.96 16 40 H 0.27 8.56 8.73 -40.82 -0.36 8.20 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.11 1.67 4.60 -51.93 -0.24 1.44 16 43 H 0.09 1.50 8.09 -51.93 -0.42 1.08 16 44 H 0.11 1.53 5.74 -51.93 -0.30 1.23 16 LS Contribution 349.33 15.07 5.26 5.26 Total: -1.00 -36.96 349.33 -6.45 -43.41 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -4.59 Total: 4.07 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -2.01 Total: -3.89 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.25 Total: -39.39 kcal Atomic # 8 Polarization: -28.93 SS G_CDS: -0.88 Total: -29.81 kcal Atomic # 14 Polarization: 24.83 SS G_CDS: -4.48 Total: 20.34 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -36.96 -6.45 -43.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599496906.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.022 kcal (2) G-P(sol) polarization free energy of solvation -36.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds