Wall clock time and date at job start Tue Mar 31 2020 18:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35691 * 117.00203 * 2 1 4 4 C 1.38766 * 119.64435 * 0.02751 * 3 2 1 5 5 C 1.37664 * 119.82040 * 179.78967 * 4 3 2 6 6 C 1.39509 * 119.71245 * 0.76134 * 5 4 3 7 7 C 1.47467 * 119.79978 * 179.53417 * 6 5 4 8 8 O 1.21508 * 119.99996 * 186.42283 * 7 6 5 9 9 O 1.34750 * 120.00320 * 6.41290 * 7 6 5 10 10 C 1.40489 * 120.39620 * 359.25378 * 6 5 4 11 11 C 1.37141 * 119.45887 * 0.13863 * 10 6 5 12 12 C 1.50832 * 122.37956 * 180.78371 * 11 10 6 13 13 N 1.46677 * 109.70121 * 348.61478 * 12 11 10 14 14 C 1.34775 * 121.35279 * 224.31721 * 13 12 11 15 15 O 1.21286 * 120.00028 * 5.48592 * 14 13 12 16 16 C 1.50699 * 119.99756 * 185.47476 * 14 13 12 17 17 H 1.09000 * 109.47088 * 52.40383 * 16 14 13 18 18 C 1.52990 * 109.47636 * 292.39926 * 16 14 13 19 19 C 1.50707 * 109.46877 * 172.40296 * 16 14 13 20 20 H 1.08006 * 120.00020 * 5.88387 * 19 16 14 21 21 C 1.37872 * 120.00010 * 185.89095 * 19 16 14 22 22 N 1.31514 * 120.00411 * 10.77091 * 21 19 16 23 23 Si 1.86805 * 120.00151 * 190.77235 * 21 19 16 24 24 H 1.48498 * 109.47192 * 94.98579 * 23 21 19 25 25 H 1.48495 * 109.47031 * 214.98919 * 23 21 19 26 26 H 1.48505 * 109.46870 * 334.98534 * 23 21 19 27 27 C 1.47239 * 117.29287 * 44.30513 * 13 12 11 28 28 C 1.50598 * 117.59256 * 179.70905 * 10 6 5 29 29 H 1.09007 * 109.46965 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47348 * 299.99829 * 1 2 3 31 31 H 1.09001 * 109.47151 * 59.99775 * 1 2 3 32 32 H 1.08002 * 120.08741 * 0.06478 * 4 3 2 33 33 H 1.07995 * 120.14450 * 180.47717 * 5 4 3 34 34 H 0.96700 * 117.00131 * 179.97438 * 9 7 6 35 35 H 1.08998 * 109.43087 * 228.54423 * 12 11 10 36 36 H 1.09003 * 109.39554 * 108.66355 * 12 11 10 37 37 H 1.09004 * 109.46885 * 62.42527 * 18 16 14 38 38 H 1.09003 * 109.47404 * 182.42402 * 18 16 14 39 39 H 1.09005 * 109.47326 * 302.42680 * 18 16 14 40 40 H 0.96994 * 120.00821 * 180.02562 * 22 21 19 41 41 H 1.08997 * 109.78476 * 176.29572 * 27 13 12 42 42 H 1.08999 * 109.78166 * 55.48134 * 27 13 12 43 43 H 1.08999 * 109.19876 * 280.79150 * 28 10 6 44 44 H 1.09004 * 109.19165 * 40.12241 * 28 10 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 6 1.2821 2.3681 0.0006 5 6 1.9034 3.5966 0.0050 6 6 3.2966 3.6669 -0.0073 7 6 3.9640 4.9819 -0.0130 8 8 5.1704 5.0504 -0.1414 9 8 3.2361 6.1076 0.1239 10 6 4.0677 2.4925 -0.0083 11 6 3.4397 1.2734 0.0000 12 6 4.2022 -0.0279 0.0169 13 7 5.6217 0.2273 -0.2502 14 6 6.3246 -0.5446 -1.1026 15 8 5.7631 -1.4089 -1.7419 16 6 7.8083 -0.3335 -1.2615 17 1 8.2848 -0.3511 -0.2813 18 6 8.0625 1.0199 -1.9280 19 6 8.3828 -1.4315 -2.1191 20 1 7.7266 -2.1499 -2.5880 21 6 9.7461 -1.5190 -2.3052 22 7 10.5579 -0.7862 -1.5747 23 14 10.4403 -2.6786 -3.5948 24 1 10.6728 -1.9325 -4.8575 25 1 11.7248 -3.2451 -3.1109 26 1 9.4751 -3.7799 -3.8411 27 6 6.2474 1.3610 0.4505 28 6 5.5661 2.6419 -0.0286 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 0.2038 2.3066 0.0021 33 1 1.3147 4.5020 0.0132 34 1 3.7180 6.9459 0.1144 35 1 3.8027 -0.6923 -0.7493 36 1 4.0958 -0.4971 0.9951 37 1 7.6852 1.8170 -1.2873 38 1 9.1332 1.1537 -2.0820 39 1 7.5501 1.0534 -2.8895 40 1 11.5170 -0.8474 -1.7058 41 1 7.3110 1.3987 0.2151 42 1 6.1107 1.2507 1.5263 43 1 5.8907 2.8616 -1.0457 44 1 5.8530 3.4657 0.6250 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599496907.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:13 Heat of formation + Delta-G solvation = -149.183985 kcal Electronic energy + Delta-G solvation = -29389.889944 eV Core-core repulsion = 25271.985834 eV Total energy + Delta-G solvation = -4117.904110 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.17568 -40.93315 -40.62255 -38.79789 -37.11492 -36.87663 -35.84867 -33.48063 -33.15178 -32.07355 -30.47873 -28.43444 -27.20691 -27.18154 -25.24536 -24.66631 -24.08432 -22.04478 -21.88415 -19.84247 -18.98004 -18.70323 -18.42700 -18.08638 -17.64260 -17.23671 -17.18567 -16.75848 -16.57610 -16.35013 -16.02348 -15.52800 -15.10121 -14.89853 -14.82412 -14.49328 -14.41941 -14.34162 -13.79903 -13.79113 -13.37741 -13.17182 -13.12772 -12.91213 -12.81910 -12.78262 -12.58004 -12.34991 -12.32615 -12.18843 -11.99819 -11.97968 -11.75456 -11.22481 -11.09782 -10.52907 -10.33758 -9.85721 -9.66394 -9.31651 -8.19679 -6.24273 -0.32908 0.17141 1.39583 1.40715 1.50262 1.52855 1.84586 2.05595 2.12335 2.22597 2.45713 2.58524 3.12573 3.45946 3.55299 3.82105 3.90514 4.03874 4.10133 4.19914 4.25779 4.35890 4.39795 4.43149 4.49843 4.57331 4.65468 4.68170 4.76145 4.80939 4.84566 4.89626 4.97338 5.04629 5.10082 5.12154 5.39112 5.41072 5.47797 5.62187 5.68578 5.69325 5.84489 6.14827 6.27238 6.53699 6.83309 7.04783 7.36620 7.45718 8.90387 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014093 B = 0.003612 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.391985 B = 7750.918321 C = 9363.279126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.328 6.328 3 C 0.172 3.828 4 C -0.220 4.220 5 C -0.003 4.003 6 C -0.190 4.190 7 C 0.532 3.468 8 O -0.538 6.538 9 O -0.504 6.504 10 C 0.023 3.977 11 C -0.158 4.158 12 C 0.167 3.833 13 N -0.620 5.620 14 C 0.525 3.475 15 O -0.586 6.586 16 C 0.029 3.971 17 H 0.047 0.953 18 C -0.119 4.119 19 C -0.532 4.532 20 H 0.047 0.953 21 C 0.025 3.975 22 N -0.910 5.910 23 Si 0.952 3.048 24 H -0.272 1.272 25 H -0.274 1.274 26 H -0.279 1.279 27 C 0.096 3.904 28 C -0.096 4.096 29 H 0.115 0.885 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.175 0.825 33 H 0.172 0.828 34 H 0.433 0.567 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.063 0.937 38 H 0.055 0.945 39 H 0.023 0.977 40 H 0.266 0.734 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.075 0.925 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.570 14.396 8.365 28.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.241 6.241 3 C 0.125 3.875 4 C -0.238 4.238 5 C -0.021 4.021 6 C -0.191 4.191 7 C 0.379 3.621 8 O -0.430 6.430 9 O -0.318 6.318 10 C 0.023 3.977 11 C -0.159 4.159 12 C 0.044 3.956 13 N -0.354 5.354 14 C 0.317 3.683 15 O -0.465 6.465 16 C 0.008 3.992 17 H 0.065 0.935 18 C -0.177 4.177 19 C -0.571 4.571 20 H 0.065 0.935 21 C -0.175 4.175 22 N -0.548 5.548 23 Si 0.777 3.223 24 H -0.197 1.197 25 H -0.199 1.199 26 H -0.204 1.204 27 C -0.026 4.026 28 C -0.133 4.133 29 H 0.133 0.867 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.192 0.808 33 H 0.189 0.811 34 H 0.295 0.705 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.043 0.957 40 H 0.075 0.925 41 H 0.118 0.882 42 H 0.110 0.890 43 H 0.093 0.907 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -22.495 13.419 8.027 27.396 hybrid contribution 0.862 -0.232 -0.789 1.191 sum -21.633 13.187 7.238 26.349 Atomic orbital electron populations 1.23514 0.75363 1.05978 1.03198 1.86088 1.24445 1.26649 1.86901 1.19326 0.90795 0.85797 0.91604 1.21466 1.01964 0.90541 1.09816 1.21450 0.91957 0.99138 0.89589 1.18992 0.94666 0.89277 1.16210 1.20688 0.84429 0.85229 0.71795 1.90883 1.16699 1.87844 1.47601 1.84481 1.44819 1.17809 1.84654 1.19362 0.95892 0.90451 0.92028 1.19047 0.91560 0.94708 1.10595 1.19989 0.79934 0.93881 1.01781 1.48250 1.10316 1.31900 1.44903 1.21667 0.90960 0.79167 0.76514 1.90488 1.72641 1.35998 1.47399 1.18752 0.86062 0.96144 0.98209 0.93511 1.21730 1.01760 0.95504 0.98707 1.21233 0.92170 1.13087 1.30569 0.93486 1.25566 0.96846 0.97595 0.97493 1.70023 1.03584 1.42290 1.38920 0.85642 0.77660 0.79140 0.79829 1.19749 1.19940 1.20407 1.22184 0.99162 0.83967 0.97310 1.21201 0.89983 0.98328 1.03746 0.86668 0.90135 0.90938 0.80756 0.81073 0.70535 0.90584 0.89872 0.91895 0.92647 0.95743 0.92494 0.88222 0.89041 0.90716 0.86101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.80 113.37 1.11 1.25 16 2 O -0.33 -7.10 9.65 -90.10 -0.87 -7.97 16 3 C 0.17 3.91 6.66 22.73 0.15 4.06 16 4 C -0.22 -3.41 9.00 22.26 0.20 -3.21 16 5 C 0.00 -0.05 9.59 22.44 0.22 0.16 16 6 C -0.19 -4.25 5.88 -19.99 -0.12 -4.36 16 7 C 0.53 11.32 8.15 70.25 0.57 11.89 16 8 O -0.54 -14.70 13.84 19.81 0.27 -14.42 16 9 O -0.50 -6.46 12.66 -56.60 -0.72 -7.18 16 10 C 0.02 0.65 5.79 -19.61 -0.11 0.53 16 11 C -0.16 -4.52 5.83 -19.75 -0.12 -4.64 16 12 C 0.17 5.75 5.71 85.64 0.49 6.24 16 13 N -0.62 -24.51 2.94 -823.98 -2.42 -26.93 16 14 C 0.53 26.35 7.03 87.66 0.62 26.96 16 15 O -0.59 -33.51 15.02 -3.05 -0.05 -33.56 16 16 C 0.03 1.56 1.67 -12.29 -0.02 1.54 16 17 H 0.05 2.57 7.57 -2.39 -0.02 2.56 16 18 C -0.12 -5.72 8.64 71.98 0.62 -5.10 16 19 C -0.53 -32.10 8.28 25.60 0.21 -31.88 16 20 H 0.05 3.04 6.80 -2.91 -0.02 3.02 16 21 C 0.02 1.43 5.16 84.65 0.44 1.87 16 22 N -0.91 -52.63 12.25 21.45 0.26 -52.37 16 23 Si 0.95 46.12 29.55 68.60 2.03 48.15 16 24 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 25 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 26 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 27 C 0.10 3.12 5.62 86.17 0.48 3.60 16 28 C -0.10 -2.86 4.19 29.74 0.12 -2.74 16 29 H 0.12 0.93 8.14 -2.38 -0.02 0.91 16 30 H 0.08 0.50 7.64 -2.39 -0.02 0.48 16 31 H 0.07 0.57 7.64 -2.39 -0.02 0.55 16 32 H 0.18 1.36 6.25 -2.91 -0.02 1.34 16 33 H 0.17 1.64 7.60 -2.91 -0.02 1.62 16 34 H 0.43 1.87 9.11 -74.06 -0.67 1.19 16 35 H 0.08 3.01 6.98 -2.39 -0.02 2.99 16 36 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 37 H 0.06 2.55 4.29 -2.39 -0.01 2.54 16 38 H 0.05 2.85 6.94 -2.39 -0.02 2.83 16 39 H 0.02 1.16 8.14 -2.38 -0.02 1.15 16 40 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 41 H 0.10 3.52 4.38 -2.39 -0.01 3.51 16 42 H 0.09 2.51 8.14 -2.39 -0.02 2.50 16 43 H 0.07 2.53 7.25 -2.39 -0.02 2.52 16 44 H 0.12 3.38 5.83 -2.39 -0.01 3.37 16 Total: -1.00 -79.47 353.39 3.78 -75.69 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 0.40 Total: 12.40 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: 4.87 Total: 6.19 kcal Atomic # 7 Polarization: -77.14 SS G_CDS: -2.16 Total: -79.30 kcal Atomic # 8 Polarization: -61.77 SS G_CDS: -1.36 Total: -63.13 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -79.47 3.78 -75.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599496907.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.492 kcal (2) G-P(sol) polarization free energy of solvation -79.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds