Wall clock time and date at job start Tue Mar 31 2020 18:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.55658 * 2 1 4 4 C 1.53295 * 109.51436 * 239.86898 * 2 1 3 5 5 N 1.47148 * 108.38801 * 292.37944 * 4 2 1 6 6 C 1.34773 * 120.98398 * 129.47201 * 5 4 2 7 7 O 1.21289 * 120.00080 * 0.02562 * 6 5 4 8 8 C 1.50693 * 120.00226 * 180.02562 * 6 5 4 9 9 H 1.09002 * 109.47435 * 300.00159 * 8 6 5 10 10 C 1.50701 * 109.47117 * 60.00259 * 8 6 5 11 11 H 1.08007 * 120.00008 * 235.40989 * 10 8 6 12 12 C 1.37875 * 120.00330 * 55.41286 * 10 8 6 13 13 N 1.31520 * 119.99685 * 2.07762 * 12 10 8 14 14 Si 1.86798 * 120.00439 * 182.08103 * 12 10 8 15 15 H 1.48498 * 109.47117 * 89.99780 * 14 12 10 16 16 H 1.48495 * 109.47199 * 210.00019 * 14 12 10 17 17 H 1.48494 * 109.47042 * 329.99885 * 14 12 10 18 18 C 1.50704 * 109.47565 * 180.02562 * 8 6 5 19 19 C 1.38229 * 120.00070 * 226.88164 * 18 8 6 20 20 C 1.38236 * 119.99734 * 179.78573 * 19 18 8 21 21 C 1.38232 * 120.00175 * 0.46177 * 20 19 18 22 22 C 1.38233 * 119.99809 * 359.76819 * 21 20 19 23 23 C 1.38234 * 119.99665 * 47.14971 * 18 8 6 24 24 C 1.47164 * 118.07380 * 309.49959 * 5 4 2 25 25 C 1.53297 * 108.37913 * 50.44953 * 24 5 4 26 26 H 1.08994 * 109.51152 * 67.72572 * 25 24 5 27 27 C 1.50703 * 109.51388 * 187.82492 * 25 24 5 28 28 O 1.20828 * 119.99972 * 114.89555 * 27 25 24 29 29 O 1.34230 * 119.99746 * 294.89868 * 27 25 24 30 30 O 1.42959 * 109.26187 * 307.77623 * 25 24 5 31 31 H 1.08998 * 109.47039 * 299.87344 * 1 2 3 32 32 H 1.08999 * 109.46855 * 59.87397 * 1 2 3 33 33 H 1.08994 * 109.46653 * 179.87487 * 1 2 3 34 34 H 1.09003 * 109.67989 * 52.10832 * 4 2 1 35 35 H 1.09000 * 109.68229 * 172.61830 * 4 2 1 36 36 H 0.96993 * 120.00138 * 180.02562 * 13 12 10 37 37 H 1.08004 * 120.00049 * 359.97438 * 19 18 8 38 38 H 1.08001 * 119.99873 * 180.24789 * 20 19 18 39 39 H 1.07996 * 120.00240 * 179.79260 * 21 20 19 40 40 H 1.08009 * 120.00289 * 180.02562 * 22 21 20 41 41 H 1.08001 * 120.00206 * 359.97438 * 23 18 8 42 42 H 1.09000 * 109.64394 * 290.75178 * 24 5 4 43 43 H 1.09002 * 109.72808 * 170.19680 * 24 5 4 44 44 H 0.96701 * 116.99262 * 179.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8949 1.0271 0.0000 4 6 2.0421 -0.7253 -1.2497 5 7 1.6960 -2.1508 -1.1335 6 6 1.0715 -2.7972 -2.1377 7 8 0.7867 -2.2038 -3.1565 8 6 0.7269 -4.2572 -1.9949 9 1 1.6396 -4.8324 -1.8389 10 6 -0.1920 -4.4435 -0.8151 11 1 0.0744 -5.1317 -0.0264 12 6 -1.3728 -3.7354 -0.7423 13 7 -1.7168 -2.9281 -1.7220 14 14 -2.4839 -3.9224 0.7476 15 1 -2.1075 -2.9184 1.7749 16 1 -3.8963 -3.7096 0.3416 17 1 -2.3311 -5.2879 1.3107 18 6 0.0399 -4.7363 -3.2478 19 6 -1.1162 -5.4886 -3.1575 20 6 -1.7488 -5.9243 -4.3069 21 6 -1.2200 -5.6156 -5.5462 22 6 -0.0613 -4.8672 -5.6363 23 6 0.5689 -4.4279 -4.4871 24 6 2.0511 -2.8505 0.1115 25 6 1.5396 -2.0210 1.2949 26 1 0.4497 -2.0283 1.3005 27 6 2.0535 -2.6111 2.5828 28 8 2.8205 -1.9814 3.2722 29 8 1.6593 -3.8363 2.9640 30 8 2.0075 -0.6763 1.1655 31 1 -0.3633 0.5119 0.8911 32 1 -0.3633 0.5158 -0.8889 33 1 -0.3632 -1.0276 -0.0022 34 1 1.5705 -0.3042 -2.1376 35 1 3.1240 -0.6143 -1.3211 36 1 -2.5473 -2.4297 -1.6707 37 1 -1.5269 -5.7336 -2.1891 38 1 -2.6542 -6.5087 -4.2365 39 1 -1.7124 -5.9587 -6.4441 40 1 0.3517 -4.6256 -6.6047 41 1 1.4744 -3.8434 -4.5575 42 1 3.1341 -2.9547 0.1772 43 1 1.5855 -3.8359 0.1255 44 1 2.0161 -4.1726 3.7975 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599851831.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:39 Heat of formation + Delta-G solvation = -143.170593 kcal Electronic energy + Delta-G solvation = -31035.919710 eV Core-core repulsion = 26918.276360 eV Total energy + Delta-G solvation = -4117.643349 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.89059 -40.88694 -39.91678 -38.71860 -37.12663 -35.74215 -35.26989 -33.72000 -32.54190 -31.31583 -30.49262 -29.32073 -27.37880 -26.02104 -25.42234 -23.42065 -22.91049 -22.14770 -21.17677 -19.93012 -19.24841 -18.91897 -18.05699 -17.53532 -17.37865 -17.10460 -16.84516 -16.66812 -16.13774 -15.93698 -15.63980 -15.43167 -15.30089 -15.23457 -14.55607 -14.30536 -14.02822 -13.94961 -13.72421 -13.58358 -13.22779 -13.06453 -12.98596 -12.81646 -12.67611 -12.59073 -12.53273 -12.32988 -12.13749 -11.86170 -11.73784 -11.41585 -11.35022 -11.14962 -11.11130 -10.59065 -10.13792 -9.34319 -9.28302 -9.06055 -8.02717 -6.18229 0.91037 0.97075 1.03049 1.39945 1.49460 1.53473 1.56288 2.17552 2.37131 2.51114 3.05045 3.24023 3.36267 3.64502 3.82590 3.90120 4.04383 4.10132 4.30598 4.35339 4.38555 4.42189 4.49406 4.54348 4.70844 4.74316 4.78739 4.80962 4.88941 4.93405 5.03092 5.07942 5.19184 5.27371 5.48940 5.50457 5.57886 5.75260 5.82058 5.93486 5.94276 5.97421 6.01909 6.45430 6.56855 6.70042 6.91770 6.96839 7.46396 7.83006 8.95454 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.013791 B = 0.005413 C = 0.004749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.774402 B = 5171.207825 C = 5894.012022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.085 3.915 3 H 0.145 0.855 4 C 0.083 3.917 5 N -0.614 5.614 6 C 0.558 3.442 7 O -0.574 6.574 8 C 0.049 3.951 9 H 0.068 0.932 10 C -0.526 4.526 11 H 0.080 0.920 12 C 0.054 3.946 13 N -0.862 5.862 14 Si 0.914 3.086 15 H -0.277 1.277 16 H -0.300 1.300 17 H -0.259 1.259 18 C -0.035 4.035 19 C -0.082 4.082 20 C -0.152 4.152 21 C -0.142 4.142 22 C -0.147 4.147 23 C -0.118 4.118 24 C 0.094 3.906 25 C 0.085 3.915 26 H 0.092 0.908 27 C 0.504 3.496 28 O -0.528 6.528 29 O -0.495 6.495 30 O -0.366 6.366 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.049 0.951 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.255 0.745 37 H 0.115 0.885 38 H 0.124 0.876 39 H 0.134 0.866 40 H 0.126 0.874 41 H 0.098 0.902 42 H 0.076 0.924 43 H 0.135 0.865 44 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.081 -1.209 3.725 6.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.027 3.973 3 H 0.162 0.838 4 C -0.040 4.040 5 N -0.349 5.349 6 C 0.350 3.650 7 O -0.453 6.453 8 C 0.028 3.972 9 H 0.086 0.914 10 C -0.564 4.564 11 H 0.098 0.902 12 C -0.151 4.151 13 N -0.495 5.495 14 Si 0.741 3.259 15 H -0.203 1.203 16 H -0.226 1.226 17 H -0.182 1.182 18 C -0.036 4.036 19 C -0.100 4.100 20 C -0.170 4.170 21 C -0.160 4.160 22 C -0.165 4.165 23 C -0.136 4.136 24 C -0.029 4.029 25 C 0.025 3.975 26 H 0.110 0.890 27 C 0.346 3.654 28 O -0.417 6.417 29 O -0.310 6.310 30 O -0.285 6.285 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.064 0.936 37 H 0.133 0.867 38 H 0.142 0.858 39 H 0.152 0.848 40 H 0.144 0.856 41 H 0.116 0.884 42 H 0.095 0.905 43 H 0.153 0.847 44 H 0.298 0.702 Dipole moment (debyes) X Y Z Total from point charges 4.950 -0.373 3.054 5.828 hybrid contribution -1.052 0.130 1.131 1.550 sum 3.898 -0.243 4.185 5.725 Atomic orbital electron populations 1.22319 0.96254 1.02708 1.02370 1.22797 0.93782 0.97123 0.83587 0.83810 1.22215 1.00678 0.82172 0.98940 1.47842 1.60608 1.09964 1.16445 1.21094 0.72457 0.90707 0.80767 1.90516 1.53727 1.69896 1.31159 1.18016 0.96496 0.88986 0.93673 0.91435 1.20790 1.04025 1.26355 1.05230 0.90167 1.25328 0.98255 0.94883 0.96645 1.70207 1.22655 1.25724 1.30962 0.86220 0.78606 0.79451 0.81595 1.20294 1.22649 1.18247 1.19916 0.95209 0.94389 0.94074 1.21120 0.94338 0.96452 0.98131 1.21305 1.00486 1.02180 0.93063 1.21152 0.96810 1.00394 0.97652 1.21166 0.97213 1.00140 0.98012 1.21026 1.00481 0.98924 0.93166 1.22397 1.00347 0.98716 0.81457 1.21645 0.99968 0.84867 0.91034 0.89029 1.22515 0.77222 0.79601 0.86106 1.90697 1.34195 1.61759 1.55026 1.84524 1.68813 1.31173 1.46469 1.87965 1.72195 1.23437 1.44951 0.91479 0.91597 0.93194 0.89849 0.89865 0.93570 0.86659 0.85793 0.84785 0.85586 0.88391 0.90539 0.84711 0.70243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.98 8.81 71.98 0.63 -5.34 16 2 C 0.08 2.53 3.93 30.69 0.12 2.65 16 3 H 0.14 3.36 8.14 -2.39 -0.02 3.34 16 4 C 0.08 2.73 6.02 86.35 0.52 3.25 16 5 N -0.61 -23.03 2.54 -817.32 -2.07 -25.10 16 6 C 0.56 24.70 5.41 87.66 0.47 25.17 16 7 O -0.57 -29.12 13.42 -3.06 -0.04 -29.16 16 8 C 0.05 2.15 2.01 -13.03 -0.03 2.12 16 9 H 0.07 2.71 8.01 -2.39 -0.02 2.69 16 10 C -0.53 -22.87 4.81 25.60 0.12 -22.74 16 11 H 0.08 3.32 7.50 -2.91 -0.02 3.30 16 12 C 0.05 2.49 4.01 84.65 0.34 2.83 16 13 N -0.86 -43.56 10.90 21.45 0.23 -43.33 16 14 Si 0.91 37.63 29.54 68.60 2.03 39.65 16 15 H -0.28 -11.26 7.11 99.48 0.71 -10.55 16 16 H -0.30 -13.03 7.11 99.48 0.71 -12.33 16 17 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 18 C -0.03 -1.58 4.51 -19.87 -0.09 -1.67 16 19 C -0.08 -3.62 8.20 22.27 0.18 -3.44 16 20 C -0.15 -5.88 10.05 22.27 0.22 -5.66 16 21 C -0.14 -5.10 10.05 22.27 0.22 -4.88 16 22 C -0.15 -5.61 10.05 22.27 0.22 -5.39 16 23 C -0.12 -5.11 8.21 22.27 0.18 -4.92 16 24 C 0.09 3.12 5.42 86.35 0.47 3.59 16 25 C 0.08 2.80 2.91 29.95 0.09 2.89 16 26 H 0.09 3.37 6.26 -2.39 -0.01 3.36 16 27 C 0.50 15.13 7.66 71.24 0.55 15.67 16 28 O -0.53 -18.15 17.27 28.37 0.49 -17.66 16 29 O -0.50 -11.47 13.42 -51.42 -0.69 -12.16 16 30 O -0.37 -12.12 9.76 -129.98 -1.27 -13.39 16 31 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.05 2.01 6.11 -2.39 -0.01 1.99 16 34 H 0.08 3.03 7.08 -2.39 -0.02 3.01 16 35 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.25 13.07 8.31 -92.71 -0.77 12.30 16 37 H 0.12 5.25 6.04 -2.91 -0.02 5.23 16 38 H 0.12 4.11 8.06 -2.91 -0.02 4.08 16 39 H 0.13 3.84 8.06 -2.91 -0.02 3.81 16 40 H 0.13 4.05 8.06 -2.91 -0.02 4.03 16 41 H 0.10 4.31 7.01 -2.91 -0.02 4.29 16 42 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.14 4.66 4.40 -2.39 -0.01 4.64 16 44 H 0.43 5.24 9.10 -74.06 -0.67 4.57 16 Total: -1.00 -63.24 354.89 3.28 -59.96 By element: Atomic # 1 Polarization: 36.68 SS G_CDS: 0.37 Total: 37.05 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: 4.23 Total: 4.13 kcal Atomic # 7 Polarization: -66.59 SS G_CDS: -1.84 Total: -68.43 kcal Atomic # 8 Polarization: -70.85 SS G_CDS: -1.51 Total: -72.36 kcal Atomic # 14 Polarization: 37.63 SS G_CDS: 2.03 Total: 39.65 kcal Total: -63.24 3.28 -59.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599851831.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.213 kcal (2) G-P(sol) polarization free energy of solvation -63.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds