Wall clock time and date at job start Tue Mar 31 2020 18:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 110.65675 * 2 1 4 4 C 1.54940 * 110.73624 * 236.61680 * 2 1 3 5 5 N 1.48382 * 103.37164 * 204.38724 * 4 2 1 6 6 C 1.34780 * 127.16752 * 219.22850 * 5 4 2 7 7 O 1.21280 * 120.00254 * 359.82724 * 6 5 4 8 8 C 1.50698 * 119.99612 * 179.82142 * 6 5 4 9 9 C 1.50704 * 109.47179 * 180.02562 * 8 6 5 10 10 C 1.38320 * 119.96372 * 269.72711 * 9 8 6 11 11 C 1.38288 * 120.13654 * 179.76048 * 10 9 8 12 12 C 1.38123 * 120.06827 * 0.51711 * 11 10 9 13 13 C 1.38858 * 119.93008 * 359.73591 * 12 11 10 14 14 O 1.35750 * 120.06898 * 179.97438 * 13 12 11 15 15 C 1.34825 * 116.99990 * 354.49480 * 14 13 12 16 16 H 1.07999 * 120.00094 * 5.05428 * 15 14 13 17 17 C 1.38659 * 120.00040 * 185.05874 * 15 14 13 18 18 N 1.31555 * 119.99725 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00040 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47286 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47043 * 119.99791 * 19 17 15 22 22 H 1.48500 * 109.47481 * 239.99683 * 19 17 15 23 23 C 1.38073 * 119.96459 * 89.99853 * 9 8 6 24 24 C 1.47480 * 105.79797 * 39.06761 * 5 4 2 25 25 C 1.54005 * 107.24440 * 334.78097 * 24 5 4 26 26 H 1.09003 * 110.32772 * 120.10556 * 25 24 5 27 27 C 1.50705 * 110.33023 * 242.21784 * 25 24 5 28 28 O 1.20816 * 119.99981 * 118.54314 * 27 25 24 29 29 O 1.34232 * 119.99632 * 298.54916 * 27 25 24 30 30 H 1.09004 * 109.46812 * 296.80390 * 1 2 3 31 31 H 1.08996 * 109.47500 * 56.79888 * 1 2 3 32 32 H 1.08998 * 109.47254 * 176.80457 * 1 2 3 33 33 H 1.08999 * 110.65932 * 322.72724 * 4 2 1 34 34 H 1.09003 * 110.66263 * 85.67242 * 4 2 1 35 35 H 1.08997 * 109.47571 * 300.00241 * 8 6 5 36 36 H 1.09003 * 109.47174 * 60.00672 * 8 6 5 37 37 H 1.07999 * 119.93625 * 359.97438 * 10 9 8 38 38 H 1.07997 * 119.96496 * 180.25465 * 11 10 9 39 39 H 1.07996 * 120.03801 * 179.72378 * 12 11 10 40 40 H 0.97007 * 119.99800 * 180.02562 * 18 17 15 41 41 H 1.08000 * 120.03851 * 0.02562 * 23 9 8 42 42 H 1.09003 * 109.91324 * 215.32673 * 24 5 4 43 43 H 1.08990 * 109.91983 * 94.23628 * 24 5 4 44 44 H 0.96694 * 116.99691 * 179.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9146 1.0199 0.0000 4 6 2.0786 -0.7973 -1.2100 5 7 3.4298 -1.2155 -0.7612 6 6 4.5562 -1.2581 -1.5001 7 8 4.5278 -0.9340 -2.6684 8 6 5.8511 -1.7083 -0.8743 9 6 6.9492 -1.6646 -1.9055 10 6 7.2119 -2.7783 -2.6827 11 6 8.2154 -2.7405 -3.6334 12 6 8.9659 -1.5933 -3.8022 13 6 8.7082 -0.4754 -3.0199 14 8 9.4443 0.6534 -3.1831 15 6 10.4835 0.5880 -4.0397 16 1 10.6491 -0.3075 -4.6203 17 6 11.3396 1.6702 -4.1751 18 7 11.1376 2.7611 -3.4681 19 14 12.7797 1.5793 -5.3612 20 1 12.7860 0.2542 -6.0315 21 1 12.6482 2.6494 -6.3825 22 1 14.0495 1.7623 -4.6133 23 6 7.6958 -0.5148 -2.0695 24 6 3.2875 -1.5718 0.6628 25 6 2.0776 -0.7917 1.2099 26 1 1.3211 -1.4808 1.5853 27 6 2.5130 0.1515 2.3017 28 8 2.3569 1.3422 2.1691 29 8 3.0744 -0.3313 3.4213 30 1 -0.3633 0.4634 0.9173 31 1 -0.3634 0.5627 -0.8598 32 1 -0.3633 -1.0260 -0.0573 33 1 1.4558 -1.6691 -1.4103 34 1 2.1429 -0.1610 -2.0927 35 1 6.1041 -1.0462 -0.0463 36 1 5.7405 -2.7275 -0.5039 37 1 6.6297 -3.6781 -2.5492 38 1 8.4154 -3.6103 -4.2415 39 1 9.7525 -1.5658 -4.5417 40 1 11.7363 3.5185 -3.5630 41 1 7.4935 0.3529 -1.4591 42 1 4.1884 -1.2897 1.2078 43 1 3.1140 -2.6432 0.7619 44 1 3.3377 0.3124 4.0931 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599855154.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:00 Heat of formation + Delta-G solvation = -126.118920 kcal Electronic energy + Delta-G solvation = -27936.641530 eV Core-core repulsion = 23819.737597 eV Total energy + Delta-G solvation = -4116.903933 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.17089 -39.85484 -38.89269 -37.75288 -36.50381 -36.31474 -33.32196 -32.31624 -31.86279 -30.71965 -29.19314 -27.80775 -26.02818 -25.22207 -24.86175 -22.53573 -21.61575 -20.97949 -20.29623 -19.41279 -18.35112 -17.67327 -17.56537 -16.96317 -16.83055 -16.30689 -15.67153 -15.55002 -14.99474 -14.67062 -14.36428 -14.33270 -13.90244 -13.74055 -13.50955 -13.43925 -13.37863 -12.87065 -12.72289 -12.57160 -12.52906 -12.36617 -11.96149 -11.82843 -11.63494 -11.49164 -11.47243 -11.23923 -11.15718 -10.92036 -10.79975 -10.72178 -10.56932 -10.38995 -9.77699 -9.27971 -8.88926 -8.78896 -8.01755 -7.16260 -6.38944 -3.97846 1.76457 2.11261 2.44021 2.51456 2.71589 2.87027 3.16441 3.17306 3.23083 3.78661 3.99662 4.01384 4.46316 4.53560 4.58160 4.83839 4.87071 4.90914 5.00217 5.05563 5.12220 5.15770 5.21085 5.26507 5.32476 5.44125 5.52503 5.59285 5.69188 5.72131 5.79172 5.84450 5.97750 6.03143 6.12031 6.23214 6.39237 6.70977 6.97030 7.12926 7.31624 7.36303 7.42371 7.47077 7.49766 7.88137 8.06294 8.21461 9.06889 9.78294 10.79470 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.016681 B = 0.002429 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.110141 B =11524.415565 C =12167.380499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.098 4.098 3 H 0.103 0.897 4 C 0.108 3.892 5 N -0.633 5.633 6 C 0.536 3.464 7 O -0.511 6.511 8 C -0.089 4.089 9 C -0.035 4.035 10 C -0.196 4.196 11 C -0.075 4.075 12 C -0.230 4.230 13 C 0.155 3.845 14 O -0.180 6.180 15 C -0.390 4.390 16 H 0.092 0.908 17 C 0.038 3.962 18 N -0.864 5.864 19 Si 0.941 3.059 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.174 4.174 24 C 0.113 3.887 25 C -0.094 4.094 26 H 0.126 0.874 27 C 0.485 3.515 28 O -0.505 6.505 29 O -0.515 6.515 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.126 0.874 40 H 0.268 0.732 41 H 0.113 0.887 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.671 -10.888 12.774 25.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.117 4.117 3 H 0.122 0.878 4 C -0.014 4.014 5 N -0.370 5.370 6 C 0.326 3.674 7 O -0.384 6.384 8 C -0.129 4.129 9 C -0.035 4.035 10 C -0.215 4.215 11 C -0.093 4.093 12 C -0.250 4.250 13 C 0.102 3.898 14 O -0.084 6.084 15 C -0.466 4.466 16 H 0.109 0.891 17 C -0.166 4.166 18 N -0.500 5.500 19 Si 0.766 3.234 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.193 4.193 24 C -0.011 4.011 25 C -0.114 4.114 26 H 0.143 0.857 27 C 0.327 3.673 28 O -0.392 6.392 29 O -0.327 6.327 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.116 0.884 36 H 0.117 0.883 37 H 0.121 0.879 38 H 0.126 0.874 39 H 0.144 0.856 40 H 0.078 0.922 41 H 0.131 0.869 42 H 0.102 0.898 43 H 0.103 0.897 44 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -19.618 -10.211 11.829 25.081 hybrid contribution 0.847 0.384 0.005 0.930 sum -18.771 -9.827 11.834 24.268 Atomic orbital electron populations 1.21747 0.92982 1.02317 1.02840 1.22399 0.96821 1.00792 0.91669 0.87836 1.22581 0.82614 0.98613 0.97590 1.48929 1.08790 1.68480 1.10814 1.20477 0.83465 0.77260 0.86229 1.90778 1.84792 1.46786 1.16090 1.20580 0.90574 1.03248 0.98457 1.18648 0.94589 0.93923 0.96375 1.20340 1.02137 0.97921 1.01078 1.20678 0.94984 0.96844 0.96775 1.21181 1.04816 0.94246 1.04709 1.19268 0.91305 0.86780 0.92471 1.83977 1.38260 1.28420 1.57719 1.21368 1.03651 1.02636 1.18978 0.89067 1.25280 0.98527 0.94654 0.98134 1.70056 1.37242 1.03886 1.38770 0.85651 0.79856 0.78712 0.79215 1.19125 1.20194 1.20191 1.19945 0.99275 0.98166 1.01945 1.21924 0.97415 0.99329 0.82420 1.22093 0.99650 0.97077 0.92563 0.85651 1.23160 0.73721 0.88407 0.82054 1.90751 1.51558 1.17700 1.79144 1.84510 1.73107 1.46021 1.29091 0.92028 0.91474 0.92055 0.90635 0.89054 0.88408 0.88293 0.87920 0.87446 0.85588 0.92166 0.86897 0.89790 0.89659 0.72723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.79 9.16 37.16 0.34 -0.45 16 2 C -0.10 -0.77 3.00 -88.75 -0.27 -1.03 16 3 H 0.10 1.09 6.92 -51.93 -0.36 0.73 16 4 C 0.11 1.01 6.53 -1.98 -0.01 1.00 16 5 N -0.63 -7.02 3.30 -169.55 -0.56 -7.58 16 6 C 0.54 8.15 7.89 -10.98 -0.09 8.07 16 7 O -0.51 -10.29 16.27 5.56 0.09 -10.20 16 8 C -0.09 -1.23 4.91 -29.03 -0.14 -1.38 16 9 C -0.03 -0.65 4.37 -104.65 -0.46 -1.11 16 10 C -0.20 -3.60 9.70 -39.53 -0.38 -3.98 16 11 C -0.07 -1.46 10.04 -39.61 -0.40 -1.85 16 12 C -0.23 -5.29 9.17 -39.39 -0.36 -5.65 16 13 C 0.16 3.96 6.65 -39.10 -0.26 3.70 16 14 O -0.18 -5.36 9.76 0.06 0.00 -5.36 16 15 C -0.39 -11.27 9.49 30.89 0.29 -10.98 16 16 H 0.09 2.45 5.20 -52.49 -0.27 2.17 16 17 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 18 N -0.86 -26.04 13.67 55.48 0.76 -25.28 16 19 Si 0.94 21.10 29.55 -169.99 -5.02 16.08 16 20 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 23 C -0.17 -3.92 9.65 -39.39 -0.38 -4.30 16 24 C 0.11 0.82 6.38 -2.98 -0.02 0.80 16 25 C -0.09 -0.61 3.07 -90.40 -0.28 -0.89 16 26 H 0.13 0.47 7.85 -51.93 -0.41 0.06 16 27 C 0.49 3.99 7.42 36.01 0.27 4.25 16 28 O -0.50 -5.99 16.21 -18.74 -0.30 -6.29 16 29 O -0.51 -2.98 13.34 -39.26 -0.52 -3.51 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.25 8.10 -51.93 -0.42 -0.17 16 33 H 0.08 0.56 8.02 -51.93 -0.42 0.14 16 34 H 0.09 1.03 7.87 -51.93 -0.41 0.62 16 35 H 0.10 1.20 7.86 -51.93 -0.41 0.79 16 36 H 0.10 1.05 8.08 -51.93 -0.42 0.63 16 37 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 38 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 39 H 0.13 2.88 5.64 -52.49 -0.30 2.58 16 40 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.11 2.49 8.06 -52.49 -0.42 2.07 16 42 H 0.08 0.60 7.03 -51.93 -0.37 0.24 16 43 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.41 0.96 9.10 45.56 0.41 1.38 16 LS Contribution 374.92 15.07 5.65 5.65 Total: -1.00 -38.12 374.92 -7.18 -45.30 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -5.03 Total: 4.02 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: -2.24 Total: -12.83 kcal Atomic # 7 Polarization: -33.06 SS G_CDS: 0.20 Total: -32.86 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.74 Total: -25.36 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -38.12 -7.18 -45.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599855154.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.816 kcal (2) G-P(sol) polarization free energy of solvation -38.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds