Wall clock time and date at job start Tue Mar 31 2020 18:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 110.65675 * 2 1 4 4 C 1.54940 * 110.73624 * 236.61680 * 2 1 3 5 5 N 1.48382 * 103.37164 * 204.38724 * 4 2 1 6 6 C 1.34780 * 127.16752 * 219.22850 * 5 4 2 7 7 O 1.21280 * 120.00254 * 359.82724 * 6 5 4 8 8 C 1.50698 * 119.99612 * 179.82142 * 6 5 4 9 9 C 1.50704 * 109.47179 * 180.02562 * 8 6 5 10 10 C 1.38320 * 119.96372 * 269.72711 * 9 8 6 11 11 C 1.38288 * 120.13654 * 179.76048 * 10 9 8 12 12 C 1.38123 * 120.06827 * 0.51711 * 11 10 9 13 13 C 1.38858 * 119.93008 * 359.73591 * 12 11 10 14 14 O 1.35750 * 120.06898 * 179.97438 * 13 12 11 15 15 C 1.34825 * 116.99990 * 354.49480 * 14 13 12 16 16 H 1.07999 * 120.00094 * 5.05428 * 15 14 13 17 17 C 1.38659 * 120.00040 * 185.05874 * 15 14 13 18 18 N 1.31555 * 119.99725 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00040 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47286 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47043 * 119.99791 * 19 17 15 22 22 H 1.48500 * 109.47481 * 239.99683 * 19 17 15 23 23 C 1.38073 * 119.96459 * 89.99853 * 9 8 6 24 24 C 1.47480 * 105.79797 * 39.06761 * 5 4 2 25 25 C 1.54005 * 107.24440 * 334.78097 * 24 5 4 26 26 H 1.09003 * 110.32772 * 120.10556 * 25 24 5 27 27 C 1.50705 * 110.33023 * 242.21784 * 25 24 5 28 28 O 1.20816 * 119.99981 * 118.54314 * 27 25 24 29 29 O 1.34232 * 119.99632 * 298.54916 * 27 25 24 30 30 H 1.09004 * 109.46812 * 296.80390 * 1 2 3 31 31 H 1.08996 * 109.47500 * 56.79888 * 1 2 3 32 32 H 1.08998 * 109.47254 * 176.80457 * 1 2 3 33 33 H 1.08999 * 110.65932 * 322.72724 * 4 2 1 34 34 H 1.09003 * 110.66263 * 85.67242 * 4 2 1 35 35 H 1.08997 * 109.47571 * 300.00241 * 8 6 5 36 36 H 1.09003 * 109.47174 * 60.00672 * 8 6 5 37 37 H 1.07999 * 119.93625 * 359.97438 * 10 9 8 38 38 H 1.07997 * 119.96496 * 180.25465 * 11 10 9 39 39 H 1.07996 * 120.03801 * 179.72378 * 12 11 10 40 40 H 0.97007 * 119.99800 * 180.02562 * 18 17 15 41 41 H 1.08000 * 120.03851 * 0.02562 * 23 9 8 42 42 H 1.09003 * 109.91324 * 215.32673 * 24 5 4 43 43 H 1.08990 * 109.91983 * 94.23628 * 24 5 4 44 44 H 0.96694 * 116.99691 * 179.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9146 1.0199 0.0000 4 6 2.0786 -0.7973 -1.2100 5 7 3.4298 -1.2155 -0.7612 6 6 4.5562 -1.2581 -1.5001 7 8 4.5278 -0.9340 -2.6684 8 6 5.8511 -1.7083 -0.8743 9 6 6.9492 -1.6646 -1.9055 10 6 7.2119 -2.7783 -2.6827 11 6 8.2154 -2.7405 -3.6334 12 6 8.9659 -1.5933 -3.8022 13 6 8.7082 -0.4754 -3.0199 14 8 9.4443 0.6534 -3.1831 15 6 10.4835 0.5880 -4.0397 16 1 10.6491 -0.3075 -4.6203 17 6 11.3396 1.6702 -4.1751 18 7 11.1376 2.7611 -3.4681 19 14 12.7797 1.5793 -5.3612 20 1 12.7860 0.2542 -6.0315 21 1 12.6482 2.6494 -6.3825 22 1 14.0495 1.7623 -4.6133 23 6 7.6958 -0.5148 -2.0695 24 6 3.2875 -1.5718 0.6628 25 6 2.0776 -0.7917 1.2099 26 1 1.3211 -1.4808 1.5853 27 6 2.5130 0.1515 2.3017 28 8 2.3569 1.3422 2.1691 29 8 3.0744 -0.3313 3.4213 30 1 -0.3633 0.4634 0.9173 31 1 -0.3634 0.5627 -0.8598 32 1 -0.3633 -1.0260 -0.0573 33 1 1.4558 -1.6691 -1.4103 34 1 2.1429 -0.1610 -2.0927 35 1 6.1041 -1.0462 -0.0463 36 1 5.7405 -2.7275 -0.5039 37 1 6.6297 -3.6781 -2.5492 38 1 8.4154 -3.6103 -4.2415 39 1 9.7525 -1.5658 -4.5417 40 1 11.7363 3.5185 -3.5630 41 1 7.4935 0.3529 -1.4591 42 1 4.1884 -1.2897 1.2078 43 1 3.1140 -2.6432 0.7619 44 1 3.3377 0.3124 4.0931 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599855154.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:59 Heat of formation + Delta-G solvation = -153.639694 kcal Electronic energy + Delta-G solvation = -27937.834920 eV Core-core repulsion = 23819.737597 eV Total energy + Delta-G solvation = -4118.097324 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.87802 -41.03564 -40.42431 -38.81132 -38.01605 -37.10342 -34.38712 -34.17310 -33.26975 -31.33905 -30.91532 -29.05864 -27.41730 -26.71779 -25.68649 -23.35803 -23.15378 -22.56246 -20.92710 -20.52124 -19.43673 -18.95221 -18.74773 -18.43236 -17.74972 -17.12286 -16.86111 -16.60550 -16.44748 -16.16315 -16.06866 -15.52732 -15.25205 -15.01319 -14.70062 -14.36790 -14.29916 -14.11240 -13.99042 -13.62261 -13.51210 -13.47518 -13.13810 -12.97896 -12.84188 -12.58638 -12.49979 -12.41237 -12.24215 -12.17196 -12.09653 -12.06708 -11.75771 -11.58984 -11.21697 -11.01373 -10.81458 -9.77861 -9.65705 -8.99060 -8.48216 -6.17010 0.49349 0.74662 1.14332 1.33046 1.42086 1.52268 1.58660 1.85582 2.10189 2.16820 2.81792 3.11361 3.21524 3.39406 3.41896 3.75681 3.92657 3.96590 4.06114 4.08934 4.28541 4.30450 4.37667 4.41265 4.45884 4.54252 4.57139 4.62280 4.68922 4.72239 4.80439 4.83868 5.02006 5.04107 5.11999 5.17099 5.23375 5.28863 5.38848 5.61869 5.63868 5.71452 5.73898 6.01775 6.21803 6.42667 6.95890 6.96254 7.12173 7.78177 8.75768 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.016681 B = 0.002429 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.110141 B =11524.415565 C =12167.380499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.094 4.094 3 H 0.066 0.934 4 C 0.105 3.895 5 N -0.629 5.629 6 C 0.533 3.467 7 O -0.577 6.577 8 C -0.086 4.086 9 C -0.027 4.027 10 C -0.177 4.177 11 C -0.072 4.072 12 C -0.246 4.246 13 C 0.112 3.888 14 O -0.236 6.236 15 C -0.413 4.413 16 H 0.101 0.899 17 C -0.026 4.026 18 N -0.923 5.923 19 Si 1.022 2.978 20 H -0.251 1.251 21 H -0.269 1.269 22 H -0.265 1.265 23 C -0.195 4.195 24 C 0.106 3.894 25 C -0.087 4.087 26 H 0.167 0.833 27 C 0.487 3.513 28 O -0.552 6.552 29 O -0.506 6.506 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.060 0.940 35 H 0.112 0.888 36 H 0.149 0.851 37 H 0.151 0.849 38 H 0.148 0.852 39 H 0.119 0.881 40 H 0.272 0.728 41 H 0.100 0.900 42 H 0.086 0.914 43 H 0.127 0.873 44 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.406 -15.275 14.004 29.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.114 4.114 3 H 0.084 0.916 4 C -0.017 4.017 5 N -0.364 5.364 6 C 0.323 3.677 7 O -0.456 6.456 8 C -0.125 4.125 9 C -0.028 4.028 10 C -0.196 4.196 11 C -0.090 4.090 12 C -0.265 4.265 13 C 0.062 3.938 14 O -0.143 6.143 15 C -0.490 4.490 16 H 0.119 0.881 17 C -0.223 4.223 18 N -0.562 5.562 19 Si 0.841 3.159 20 H -0.174 1.174 21 H -0.194 1.194 22 H -0.190 1.190 23 C -0.215 4.215 24 C -0.016 4.016 25 C -0.107 4.107 26 H 0.185 0.815 27 C 0.331 3.669 28 O -0.442 6.442 29 O -0.319 6.319 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.107 0.893 33 H 0.125 0.875 34 H 0.078 0.922 35 H 0.131 0.869 36 H 0.166 0.834 37 H 0.169 0.831 38 H 0.166 0.834 39 H 0.136 0.864 40 H 0.081 0.919 41 H 0.118 0.882 42 H 0.105 0.895 43 H 0.145 0.855 44 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -21.412 -14.665 13.146 29.092 hybrid contribution 1.098 1.547 -0.183 1.906 sum -20.315 -13.118 12.963 27.437 Atomic orbital electron populations 1.21726 0.91000 1.03968 1.02628 1.22268 0.98362 0.98800 0.91946 0.91551 1.22748 0.82291 0.99534 0.97107 1.48915 1.08312 1.66720 1.12427 1.20594 0.84674 0.76814 0.85646 1.90761 1.85873 1.50068 1.18883 1.20681 0.88134 1.06603 0.97048 1.19180 0.94448 0.92352 0.96824 1.20985 1.00756 0.99066 0.98748 1.21160 0.94100 0.96609 0.97123 1.21310 1.05684 0.94969 1.04549 1.19863 0.92314 0.87098 0.94512 1.83937 1.39865 1.31012 1.59533 1.21883 1.04141 1.03483 1.19447 0.88130 1.26649 1.01616 0.93838 1.00157 1.70208 1.39271 1.05112 1.41601 0.84493 0.75445 0.79468 0.76532 1.17391 1.19428 1.19032 1.20199 0.99768 0.99625 1.01887 1.22304 0.97882 1.01711 0.79668 1.22190 1.00307 0.96863 0.91292 0.81524 1.23533 0.72790 0.87936 0.82665 1.90753 1.53566 1.19769 1.80110 1.84475 1.72322 1.46315 1.28809 0.92038 0.92042 0.89329 0.87478 0.92165 0.86950 0.83363 0.83116 0.83415 0.86366 0.91868 0.88170 0.89544 0.85484 0.71007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.16 71.98 0.66 -0.57 16 2 C -0.09 -1.35 3.00 -9.58 -0.03 -1.37 16 3 H 0.07 1.47 6.92 -2.39 -0.02 1.45 16 4 C 0.11 1.80 6.53 86.68 0.57 2.37 16 5 N -0.63 -12.40 3.30 -808.73 -2.67 -15.07 16 6 C 0.53 15.32 7.89 87.66 0.69 16.01 16 7 O -0.58 -23.42 16.27 -3.03 -0.05 -23.47 16 8 C -0.09 -2.11 4.91 29.10 0.14 -1.96 16 9 C -0.03 -0.99 4.37 -19.88 -0.09 -1.08 16 10 C -0.18 -5.86 9.70 22.30 0.22 -5.65 16 11 C -0.07 -2.65 10.04 22.25 0.22 -2.42 16 12 C -0.25 -11.54 9.17 22.39 0.21 -11.34 16 13 C 0.11 6.06 6.65 22.58 0.15 6.21 16 14 O -0.24 -15.21 9.76 -22.68 -0.22 -15.43 16 15 C -0.41 -25.38 9.49 67.92 0.64 -24.74 16 16 H 0.10 5.69 5.20 -2.91 -0.02 5.67 16 17 C -0.03 -1.53 5.49 84.83 0.47 -1.06 16 18 N -0.92 -59.09 13.67 21.61 0.30 -58.80 16 19 Si 1.02 44.69 29.55 68.60 2.03 46.72 16 20 H -0.25 -10.11 7.11 99.48 0.71 -9.41 16 21 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 22 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 23 C -0.20 -9.18 9.65 22.39 0.22 -8.96 16 24 C 0.11 1.07 6.38 86.53 0.55 1.62 16 25 C -0.09 -0.82 3.07 -10.65 -0.03 -0.86 16 26 H 0.17 0.27 7.85 -2.39 -0.02 0.25 16 27 C 0.49 7.03 7.42 71.24 0.53 7.56 16 28 O -0.55 -13.06 16.21 21.99 0.36 -12.71 16 29 O -0.51 -4.42 13.34 -51.44 -0.69 -5.10 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.09 0.34 8.10 -2.39 -0.02 0.32 16 33 H 0.11 1.20 8.02 -2.39 -0.02 1.18 16 34 H 0.06 1.42 7.87 -2.39 -0.02 1.40 16 35 H 0.11 2.47 7.86 -2.39 -0.02 2.46 16 36 H 0.15 2.20 8.08 -2.39 -0.02 2.18 16 37 H 0.15 3.64 8.06 -2.91 -0.02 3.61 16 38 H 0.15 4.21 8.06 -2.91 -0.02 4.19 16 39 H 0.12 5.59 5.64 -2.91 -0.02 5.58 16 40 H 0.27 15.87 8.31 -92.70 -0.77 15.10 16 41 H 0.10 4.79 8.06 -2.91 -0.02 4.76 16 42 H 0.09 0.88 7.03 -2.39 -0.02 0.86 16 43 H 0.13 0.38 8.14 -2.39 -0.02 0.36 16 44 H 0.43 1.08 9.10 -74.06 -0.67 0.41 16 Total: -1.00 -94.02 374.92 4.53 -89.49 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: 0.37 Total: 20.62 kcal Atomic # 6 Polarization: -31.36 SS G_CDS: 5.11 Total: -26.24 kcal Atomic # 7 Polarization: -71.49 SS G_CDS: -2.38 Total: -73.87 kcal Atomic # 8 Polarization: -56.11 SS G_CDS: -0.60 Total: -56.71 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -94.02 4.53 -89.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599855154.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.151 kcal (2) G-P(sol) polarization free energy of solvation -94.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds