Wall clock time and date at job start Tue Mar 31 2020 18:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.91797 * 2 1 4 4 C 1.54916 * 111.00156 * 236.09599 * 2 1 3 5 5 N 1.47419 * 104.83015 * 204.91573 * 4 2 1 6 6 C 1.34775 * 125.64920 * 204.09269 * 5 4 2 7 7 O 1.21590 * 120.00189 * 174.75753 * 6 5 4 8 8 C 1.47533 * 120.00178 * 354.75677 * 6 5 4 9 9 C 1.39675 * 120.19311 * 323.07609 * 8 6 5 10 10 C 1.37831 * 119.91830 * 179.97438 * 9 8 6 11 11 C 1.38577 * 120.31985 * 0.02562 * 10 9 8 12 12 C 1.38023 * 120.40325 * 0.02562 * 11 10 9 13 13 C 1.38832 * 120.07169 * 359.67922 * 12 11 10 14 14 O 1.35526 * 120.16211 * 180.29570 * 13 12 11 15 15 C 1.34819 * 116.99710 * 6.07052 * 14 13 12 16 16 H 1.07998 * 120.00106 * 5.39672 * 15 14 13 17 17 C 1.38693 * 119.99962 * 185.38999 * 15 14 13 18 18 N 1.31519 * 120.00432 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99998 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47405 * 89.99529 * 19 17 15 21 21 H 1.48497 * 109.47006 * 210.00104 * 19 17 15 22 22 H 1.48510 * 109.46871 * 329.99386 * 19 17 15 23 23 C 1.47032 * 108.70643 * 24.13072 * 5 4 2 24 24 C 1.54326 * 107.26826 * 358.94014 * 23 5 4 25 25 H 1.08991 * 110.72203 * 96.34444 * 24 23 5 26 26 C 1.52993 * 110.71701 * 219.44714 * 24 23 5 27 27 C 1.50697 * 109.47304 * 293.54155 * 26 24 23 28 28 O 1.20835 * 119.99640 * 0.02562 * 27 26 24 29 29 O 1.34224 * 120.00466 * 180.02562 * 27 26 24 30 30 H 1.09003 * 109.47355 * 296.09933 * 1 2 3 31 31 H 1.08994 * 109.47180 * 56.09750 * 1 2 3 32 32 H 1.09005 * 109.47432 * 176.10330 * 1 2 3 33 33 H 1.09000 * 110.36455 * 86.07532 * 4 2 1 34 34 H 1.08997 * 110.45680 * 323.80090 * 4 2 1 35 35 H 1.07996 * 120.03859 * 359.97438 * 9 8 6 36 36 H 1.07992 * 119.83822 * 180.02562 * 10 9 8 37 37 H 1.08001 * 119.79402 * 180.02562 * 11 10 9 38 38 H 1.07999 * 119.96094 * 179.97438 * 12 11 10 39 39 H 0.96997 * 120.00265 * 179.97438 * 18 17 15 40 40 H 1.09002 * 109.88182 * 239.52201 * 23 5 4 41 41 H 1.08992 * 109.88275 * 118.35344 * 23 5 4 42 42 H 1.09008 * 109.47180 * 173.54539 * 26 24 23 43 43 H 1.08998 * 109.47623 * 53.54613 * 26 24 23 44 44 H 0.96704 * 117.00355 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0181 0.0000 4 6 2.0852 -0.8067 -1.2003 5 7 3.4270 -1.2431 -0.7734 6 6 4.4475 -1.5617 -1.5940 7 8 5.5424 -1.8180 -1.1315 8 6 4.2362 -1.5994 -3.0537 9 6 3.0291 -2.0686 -3.5768 10 6 2.8376 -2.1009 -4.9414 11 6 3.8376 -1.6702 -5.7986 12 6 5.0360 -1.2050 -5.2960 13 6 5.2443 -1.1596 -3.9241 14 8 6.4180 -0.6975 -3.4285 15 6 7.2942 -0.1797 -4.3127 16 1 7.0124 -0.0669 -5.3492 17 6 8.5573 0.2082 -3.8913 18 7 9.4123 0.7128 -4.7538 19 14 9.0448 0.0125 -2.0986 20 1 9.6592 -1.3241 -1.8957 21 1 10.0236 1.0679 -1.7338 22 1 7.8388 0.1383 -1.2411 23 6 3.4674 -1.2742 0.6961 24 6 2.0861 -0.8080 1.2023 25 1 1.4478 -1.6632 1.4239 26 6 2.2350 0.0876 2.4337 27 6 2.7766 -0.7237 3.5824 28 8 3.0191 -1.8978 3.4313 29 8 2.9896 -0.1423 4.7732 30 1 -0.3634 0.4521 0.9229 31 1 -0.3633 0.5732 -0.8529 32 1 -0.3634 -1.0253 -0.0698 33 1 2.1558 -0.1721 -2.0837 34 1 1.4524 -1.6704 -1.4042 35 1 2.2469 -2.4057 -2.9129 36 1 1.9036 -2.4635 -5.3444 37 1 3.6783 -1.6988 -6.8664 38 1 5.8106 -0.8715 -5.9706 39 1 10.2955 0.9845 -4.4590 40 1 4.2426 -0.5998 1.0599 41 1 3.6649 -2.2894 1.0401 42 1 1.2619 0.4970 2.7051 43 1 2.9224 0.9031 2.2090 44 1 3.3375 -0.7033 5.4799 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599863304.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:17 Heat of formation + Delta-G solvation = -151.390091 kcal Electronic energy + Delta-G solvation = -29008.235164 eV Core-core repulsion = 24890.235390 eV Total energy + Delta-G solvation = -4117.999774 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.80808 -41.25321 -40.35131 -38.76010 -38.19125 -37.08553 -34.59431 -34.51354 -32.60862 -32.08100 -30.85205 -28.61826 -27.34877 -27.25153 -25.08322 -23.66414 -22.99648 -22.05124 -21.07086 -20.82070 -19.90294 -19.13036 -18.87643 -18.01485 -17.75936 -17.28779 -16.94027 -16.80905 -16.31689 -16.11518 -15.73400 -15.51066 -15.37858 -14.93341 -14.88587 -14.54008 -14.33158 -14.11310 -14.04504 -13.83370 -13.63265 -13.35986 -13.15189 -12.97941 -12.77297 -12.64560 -12.61386 -12.51858 -12.41006 -12.12118 -11.90870 -11.76276 -11.65001 -11.56969 -11.39298 -11.01385 -10.84634 -9.92717 -9.68183 -9.17285 -8.61835 -6.30454 0.09536 0.61880 1.16452 1.23051 1.23612 1.46354 1.77997 1.98143 2.15575 2.21117 2.69304 2.98919 3.05718 3.37800 3.43069 3.65829 3.82030 4.00302 4.06915 4.19728 4.23742 4.33450 4.45066 4.48834 4.53683 4.56658 4.60983 4.66891 4.68069 4.77455 4.82333 4.91296 5.04507 5.09110 5.17901 5.26681 5.35958 5.37713 5.46553 5.56000 5.61144 5.64751 5.66884 5.81749 6.13748 6.45361 6.75018 6.99122 7.18340 7.54114 8.49241 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.010951 B = 0.004058 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.298498 B = 6898.423248 C = 8865.878656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.089 4.089 3 H 0.092 0.908 4 C 0.094 3.906 5 N -0.619 5.619 6 C 0.571 3.429 7 O -0.587 6.587 8 C -0.224 4.224 9 C -0.035 4.035 10 C -0.182 4.182 11 C -0.043 4.043 12 C -0.244 4.244 13 C 0.159 3.841 14 O -0.227 6.227 15 C -0.400 4.400 16 H 0.095 0.905 17 C 0.030 3.970 18 N -0.908 5.908 19 Si 0.952 3.048 20 H -0.278 1.278 21 H -0.256 1.256 22 H -0.281 1.281 23 C 0.112 3.888 24 C -0.071 4.071 25 H 0.106 0.894 26 C -0.102 4.102 27 C 0.476 3.524 28 O -0.552 6.552 29 O -0.515 6.515 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.160 0.840 36 H 0.170 0.830 37 H 0.154 0.846 38 H 0.117 0.883 39 H 0.287 0.713 40 H 0.038 0.962 41 H 0.049 0.951 42 H 0.154 0.846 43 H 0.115 0.885 44 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.812 -0.014 12.101 28.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.108 4.108 3 H 0.110 0.890 4 C -0.027 4.027 5 N -0.353 5.353 6 C 0.363 3.637 7 O -0.467 6.467 8 C -0.229 4.229 9 C -0.053 4.053 10 C -0.200 4.200 11 C -0.061 4.061 12 C -0.263 4.263 13 C 0.106 3.894 14 O -0.133 6.133 15 C -0.476 4.476 16 H 0.113 0.887 17 C -0.171 4.171 18 N -0.548 5.548 19 Si 0.776 3.224 20 H -0.203 1.203 21 H -0.181 1.181 22 H -0.207 1.207 23 C -0.010 4.010 24 C -0.090 4.090 25 H 0.124 0.876 26 C -0.139 4.139 27 C 0.320 3.680 28 O -0.443 6.443 29 O -0.329 6.329 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.114 0.886 35 H 0.177 0.823 36 H 0.187 0.813 37 H 0.172 0.828 38 H 0.135 0.865 39 H 0.097 0.903 40 H 0.056 0.944 41 H 0.068 0.932 42 H 0.171 0.829 43 H 0.133 0.867 44 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -24.935 -0.121 12.152 27.739 hybrid contribution 1.908 -0.530 0.885 2.169 sum -23.028 -0.651 13.037 26.470 Atomic orbital electron populations 1.21718 0.90417 1.03344 1.03781 1.22463 0.98394 0.98851 0.91104 0.88973 1.22921 0.81263 0.99499 0.99057 1.48383 1.13286 1.67053 1.06559 1.18245 0.82609 0.76028 0.86820 1.90761 1.26233 1.51528 1.78203 1.19104 0.96886 1.16143 0.90723 1.21399 0.92943 0.94092 0.96833 1.21242 1.01129 1.05573 0.92015 1.21455 0.90822 0.92400 1.01473 1.21323 1.01381 1.10196 0.93446 1.19670 0.85373 0.91324 0.92984 1.83685 1.24060 1.68684 1.36844 1.20853 0.94364 1.39996 0.92351 0.88722 1.24952 0.94303 0.95531 1.02313 1.69663 1.07477 1.41835 1.35829 0.85500 0.78174 0.78369 0.80313 1.20326 1.18061 1.20660 1.22026 0.98888 1.00588 0.79535 1.22116 0.93879 0.99131 0.93880 0.87586 1.21512 1.06102 0.97974 0.88311 1.23973 0.73503 0.86395 0.84111 1.90762 1.49830 1.19721 1.83977 1.84495 1.77909 1.48147 1.22349 0.90151 0.91028 0.91439 0.90117 0.88561 0.82294 0.81278 0.82806 0.86510 0.90350 0.94361 0.93243 0.82869 0.86670 0.71337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 9.31 71.98 0.67 -0.18 16 2 C -0.09 -1.18 3.09 -9.40 -0.03 -1.21 16 3 H 0.09 1.24 8.05 -2.39 -0.02 1.22 16 4 C 0.09 1.88 4.69 86.86 0.41 2.29 16 5 N -0.62 -20.26 3.33 -815.53 -2.71 -22.98 16 6 C 0.57 25.64 7.34 86.69 0.64 26.27 16 7 O -0.59 -33.21 16.36 12.23 0.20 -33.01 16 8 C -0.22 -9.38 5.41 -19.99 -0.11 -9.49 16 9 C -0.03 -1.00 8.18 22.52 0.18 -0.82 16 10 C -0.18 -4.54 10.03 22.25 0.22 -4.32 16 11 C -0.04 -1.33 10.03 22.30 0.22 -1.10 16 12 C -0.24 -10.51 9.12 22.36 0.20 -10.30 16 13 C 0.16 7.91 6.62 22.90 0.15 8.07 16 14 O -0.23 -13.67 7.29 -3.94 -0.03 -13.70 16 15 C -0.40 -24.75 9.90 67.93 0.67 -24.08 16 16 H 0.10 5.88 5.54 -2.91 -0.02 5.86 16 17 C 0.03 1.81 5.49 84.85 0.47 2.28 16 18 N -0.91 -55.80 13.96 21.62 0.30 -55.49 16 19 Si 0.95 52.06 28.62 68.60 1.96 54.02 16 20 H -0.28 -15.18 7.11 99.48 0.71 -14.47 16 21 H -0.26 -12.60 7.11 99.48 0.71 -11.89 16 22 H -0.28 -16.69 7.11 99.48 0.71 -15.98 16 23 C 0.11 3.33 5.46 86.73 0.47 3.80 16 24 C -0.07 -1.18 2.02 -9.60 -0.02 -1.20 16 25 H 0.11 1.62 7.94 -2.39 -0.02 1.60 16 26 C -0.10 -1.25 5.20 29.84 0.16 -1.09 16 27 C 0.48 8.47 8.12 71.23 0.58 9.05 16 28 O -0.55 -14.41 15.62 21.94 0.34 -14.07 16 29 O -0.52 -6.77 13.42 -51.36 -0.69 -7.46 16 30 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.07 0.38 8.08 -2.38 -0.02 0.36 16 33 H 0.08 1.71 7.29 -2.39 -0.02 1.69 16 34 H 0.10 1.43 6.76 -2.39 -0.02 1.41 16 35 H 0.16 3.33 5.80 -2.91 -0.02 3.32 16 36 H 0.17 2.58 8.06 -2.91 -0.02 2.56 16 37 H 0.15 3.52 8.06 -2.91 -0.02 3.49 16 38 H 0.12 5.46 5.72 -2.91 -0.02 5.45 16 39 H 0.29 16.20 8.31 -92.71 -0.77 15.43 16 40 H 0.04 1.29 7.77 -2.39 -0.02 1.27 16 41 H 0.05 1.70 7.68 -2.39 -0.02 1.68 16 42 H 0.15 0.67 8.14 -2.38 -0.02 0.65 16 43 H 0.12 1.40 8.06 -2.39 -0.02 1.38 16 44 H 0.43 2.64 9.10 -74.05 -0.67 1.97 16 Total: -1.00 -91.76 366.56 4.64 -87.12 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: 0.37 Total: 7.59 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: 4.89 Total: -2.03 kcal Atomic # 7 Polarization: -76.06 SS G_CDS: -2.41 Total: -78.47 kcal Atomic # 8 Polarization: -68.06 SS G_CDS: -0.18 Total: -68.24 kcal Atomic # 14 Polarization: 52.06 SS G_CDS: 1.96 Total: 54.02 kcal Total: -91.76 4.64 -87.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599863304.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.268 kcal (2) G-P(sol) polarization free energy of solvation -91.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds