Wall clock time and date at job start Tue Mar 31 2020 17:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 110.78045 * 2 1 4 4 C 1.54366 * 110.75714 * 123.24630 * 2 1 3 5 5 N 1.47026 * 107.29110 * 140.50931 * 4 2 1 6 6 S 1.65594 * 125.65105 * 181.05830 * 5 4 2 7 7 O 1.42097 * 104.27652 * 26.10952 * 6 5 4 8 8 O 1.42107 * 104.27727 * 153.96719 * 6 5 4 9 9 C 1.81395 * 104.45031 * 270.03834 * 6 5 4 10 10 C 1.52996 * 109.47647 * 180.02562 * 9 6 5 11 11 C 1.53010 * 109.46593 * 300.00019 * 10 9 6 12 12 C 1.53002 * 109.47217 * 59.99436 * 10 9 6 13 13 C 1.50695 * 109.47368 * 180.02562 * 10 9 6 14 14 H 1.07997 * 120.00194 * 0.02562 * 13 10 9 15 15 C 1.37882 * 119.99711 * 179.97438 * 13 10 9 16 16 N 1.31517 * 120.00079 * 359.97438 * 15 13 10 17 17 Si 1.86803 * 119.99707 * 180.02562 * 15 13 10 18 18 H 1.48500 * 109.47420 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47344 * 120.00055 * 17 15 13 20 20 H 1.48501 * 109.46587 * 239.99436 * 17 15 13 21 21 C 1.47427 * 108.70093 * 1.08866 * 5 4 2 22 22 C 1.54917 * 104.83294 * 335.87668 * 21 5 4 23 23 C 1.52997 * 110.99865 * 278.89541 * 22 21 5 24 24 C 1.50696 * 111.00127 * 155.08291 * 22 21 5 25 25 O 1.20833 * 119.99655 * 244.57456 * 24 22 21 26 26 O 1.34222 * 120.00432 * 64.85723 * 24 22 21 27 27 H 1.09003 * 109.46867 * 183.23556 * 1 2 3 28 28 H 1.08996 * 109.47408 * 303.23424 * 1 2 3 29 29 H 1.09003 * 109.47504 * 63.23894 * 1 2 3 30 30 H 1.08993 * 109.84841 * 21.09937 * 4 2 1 31 31 H 1.09003 * 110.03044 * 260.01401 * 4 2 1 32 32 H 1.09005 * 109.47033 * 300.00403 * 9 6 5 33 33 H 1.09000 * 109.46979 * 59.99882 * 9 6 5 34 34 H 1.09004 * 109.47109 * 60.00190 * 11 10 9 35 35 H 1.09001 * 109.46725 * 179.97438 * 11 10 9 36 36 H 1.09000 * 109.47213 * 299.99780 * 11 10 9 37 37 H 1.09005 * 109.46463 * 60.00372 * 12 10 9 38 38 H 1.08994 * 109.47001 * 180.02562 * 12 10 9 39 39 H 1.09000 * 109.47318 * 300.00867 * 12 10 9 40 40 H 0.97001 * 119.99858 * 180.02562 * 16 15 13 41 41 H 1.09002 * 110.36988 * 217.03623 * 21 5 4 42 42 H 1.09005 * 110.36230 * 94.71121 * 21 5 4 43 43 H 1.08999 * 109.47345 * 295.41322 * 23 22 21 44 44 H 1.08992 * 109.47785 * 55.41984 * 23 22 21 45 45 H 1.09000 * 109.46729 * 175.42234 * 23 22 21 46 46 H 0.96701 * 117.00458 * 179.72178 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9166 1.0191 0.0000 4 6 2.0770 -0.7914 1.2072 5 7 3.2449 -1.5515 0.7384 6 16 4.1635 -2.5755 1.6603 7 8 3.2794 -3.0155 2.6819 8 8 4.7145 -3.4912 0.7236 9 6 5.4624 -1.5168 2.3550 10 6 6.3882 -2.3572 3.2367 11 6 5.5787 -2.9842 4.3738 12 6 7.0277 -3.4638 2.3956 13 6 7.4668 -1.4775 3.8144 14 1 7.4895 -0.4243 3.5767 15 6 8.4241 -2.0172 4.6471 16 7 8.3955 -3.2996 4.9377 17 14 9.7607 -0.9266 5.3637 18 1 9.5713 0.4669 4.8868 19 1 9.6831 -0.9578 6.8464 20 1 11.0908 -1.4223 4.9272 21 6 3.4632 -1.2506 -0.6882 22 6 2.0789 -0.7954 -1.2139 23 6 1.1888 -1.9994 -1.5284 24 6 2.2255 0.0945 -2.4212 25 8 1.8730 1.2490 -2.3671 26 8 2.7424 -0.3968 -3.5583 27 1 -0.3633 -1.0261 0.0580 28 1 -0.3634 0.5632 0.8595 29 1 -0.3634 0.4627 -0.9176 30 1 1.3138 -1.4756 1.5778 31 1 2.3754 -0.1048 1.9995 32 1 6.0392 -1.0704 1.5450 33 1 5.0067 -0.7283 2.9539 34 1 4.7983 -3.6204 3.9563 35 1 6.2382 -3.5833 5.0017 36 1 5.1231 -2.1959 4.9731 37 1 7.6043 -3.0170 1.5856 38 1 7.6869 -4.0627 3.0239 39 1 6.2472 -4.0999 1.9781 40 1 9.0688 -3.6791 5.5239 41 1 3.7952 -2.1436 -1.2179 42 1 4.1935 -0.4490 -0.7994 43 1 1.6266 -2.5709 -2.3468 44 1 1.1087 -2.6328 -0.6450 45 1 0.1969 -1.6522 -1.8177 46 1 2.8129 0.2110 -4.3071 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599930764.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:38 Heat of formation + Delta-G solvation = -164.909322 kcal Electronic energy + Delta-G solvation = -28794.916259 eV Core-core repulsion = 24811.774199 eV Total energy + Delta-G solvation = -3983.142060 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.11778 -38.81063 -36.61997 -36.39270 -36.29798 -35.35240 -33.23387 -31.68270 -31.45825 -27.07863 -26.70641 -26.19665 -25.74330 -25.24823 -24.12381 -21.89885 -19.53016 -19.40501 -18.63314 -18.16433 -17.61458 -16.81467 -16.16394 -15.95406 -15.56465 -15.34989 -14.94670 -14.78179 -14.62656 -13.87220 -13.81830 -13.36725 -13.08314 -13.03702 -12.84203 -12.57471 -12.53697 -12.43230 -12.14846 -12.09928 -11.94978 -11.74865 -11.51090 -11.26141 -11.12449 -11.09520 -10.99424 -10.93524 -10.85074 -10.73914 -10.63238 -10.38184 -10.30515 -10.13025 -9.68086 -9.61701 -8.99474 -8.65011 -8.42465 -6.05561 -4.17507 0.72088 1.88214 2.64035 3.08039 3.23769 3.32347 3.35043 3.85440 4.17062 4.28045 4.36444 4.49455 4.61907 4.83544 4.93541 5.01138 5.17566 5.20039 5.27513 5.39041 5.46465 5.49413 5.52274 5.59146 5.63230 5.68243 5.72313 5.87131 5.91070 6.02729 6.10641 6.19634 6.34964 6.37946 6.67832 6.76700 6.87383 7.01101 7.28809 7.47686 7.59008 7.66017 7.95605 8.07230 8.30569 8.81218 9.48095 10.95806 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.020025 B = 0.003384 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.900751 B = 8271.252798 C = 8571.721853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.081 4.081 3 H 0.099 0.901 4 C 0.123 3.877 5 N -1.019 6.019 6 S 2.606 3.394 7 O -0.956 6.956 8 O -0.957 6.957 9 C -0.581 4.581 10 C 0.081 3.919 11 C -0.163 4.163 12 C -0.163 4.163 13 C -0.501 4.501 14 H 0.059 0.941 15 C 0.065 3.935 16 N -0.883 5.883 17 Si 0.896 3.104 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.133 3.867 22 C -0.064 4.064 23 C -0.138 4.138 24 C 0.498 3.502 25 O -0.509 6.509 26 O -0.510 6.510 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.027 0.973 35 H 0.095 0.905 36 H 0.036 0.964 37 H 0.036 0.964 38 H 0.095 0.905 39 H 0.027 0.973 40 H 0.262 0.738 41 H 0.099 0.901 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.067 0.933 46 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.069 5.544 -13.429 20.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.101 4.101 3 H 0.117 0.883 4 C -0.003 4.003 5 N -0.855 5.855 6 S 2.707 3.293 7 O -0.946 6.946 8 O -0.947 6.947 9 C -0.714 4.714 10 C 0.078 3.922 11 C -0.221 4.221 12 C -0.221 4.221 13 C -0.541 4.541 14 H 0.077 0.923 15 C -0.137 4.137 16 N -0.521 5.521 17 Si 0.724 3.276 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.209 1.209 21 C 0.007 3.993 22 C -0.066 4.066 23 C -0.195 4.195 24 C 0.339 3.661 25 O -0.397 6.397 26 O -0.321 6.321 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.046 0.954 35 H 0.114 0.886 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.114 0.886 39 H 0.046 0.954 40 H 0.072 0.928 41 H 0.117 0.883 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.097 0.903 45 H 0.086 0.914 46 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -14.250 4.453 -12.828 19.684 hybrid contribution 1.198 1.801 -0.055 2.164 sum -13.052 6.254 -12.883 19.376 Atomic orbital electron populations 1.21835 0.93273 1.02543 1.02570 1.22247 0.97008 0.99629 0.91213 0.88302 1.21822 0.87800 0.94535 0.96120 1.58977 1.42860 1.64057 1.19608 1.05449 0.75340 0.74977 0.73581 1.93541 1.63827 1.79050 1.58216 1.93540 1.79631 1.59348 1.62208 1.30571 1.15159 1.14465 1.11246 1.17960 0.91754 0.92001 0.90446 1.22275 0.98538 1.00408 1.00869 1.22272 1.01295 0.99235 0.99290 1.20971 1.10018 0.94574 1.28497 0.92262 1.24941 0.97643 0.95111 0.96039 1.69811 1.34953 1.11123 1.36259 0.86477 0.81641 0.80637 0.78878 1.19847 1.20921 1.20929 1.21909 0.93964 1.01917 0.81490 1.21720 0.98770 0.95971 0.90163 1.21826 0.98631 0.95504 1.03520 1.23028 0.72676 0.86649 0.83740 1.90721 1.46113 1.18979 1.83864 1.84561 1.76149 1.48409 1.23026 0.91695 0.91656 0.92006 0.90398 0.90960 0.86406 0.86370 0.95423 0.88596 0.94453 0.94451 0.88613 0.95392 0.92776 0.88284 0.91164 0.90827 0.90298 0.91405 0.73103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 8.13 37.15 0.30 -0.86 16 2 C -0.08 -0.80 2.51 -88.77 -0.22 -1.02 16 3 H 0.10 1.01 7.44 -51.93 -0.39 0.63 16 4 C 0.12 1.41 6.14 -3.04 -0.02 1.39 16 5 N -1.02 -14.10 3.61 -111.39 -0.40 -14.51 16 6 S 2.61 47.65 4.68 -107.50 -0.50 47.14 16 7 O -0.96 -19.56 15.22 -57.54 -0.88 -20.44 16 8 O -0.96 -19.51 14.90 -57.54 -0.86 -20.36 16 9 C -0.58 -11.26 5.12 37.16 0.19 -11.07 16 10 C 0.08 1.94 0.52 -155.66 -0.08 1.86 16 11 C -0.16 -3.98 7.77 37.16 0.29 -3.70 16 12 C -0.16 -3.98 7.78 37.16 0.29 -3.69 16 13 C -0.50 -13.10 8.01 -34.44 -0.28 -13.37 16 14 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 15 C 0.06 1.70 5.15 -17.82 -0.09 1.61 16 16 N -0.88 -23.97 9.35 55.43 0.52 -23.45 16 17 Si 0.90 20.56 29.54 -169.99 -5.02 15.53 16 18 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 C 0.13 1.58 5.99 -2.52 -0.02 1.57 16 22 C -0.06 -0.64 0.71 -153.51 -0.11 -0.75 16 23 C -0.14 -1.22 7.35 37.16 0.27 -0.94 16 24 C 0.50 4.95 7.01 36.00 0.25 5.21 16 25 O -0.51 -6.21 16.51 -18.76 -0.31 -6.52 16 26 O -0.51 -3.88 13.37 -39.24 -0.52 -4.41 16 27 H 0.06 0.48 6.71 -51.93 -0.35 0.13 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.88 7.77 -51.93 -0.40 0.47 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.12 2.09 8.14 -51.92 -0.42 1.66 16 33 H 0.12 2.09 8.14 -51.92 -0.42 1.66 16 34 H 0.03 0.64 5.47 -51.93 -0.28 0.35 16 35 H 0.10 2.53 6.07 -51.93 -0.32 2.21 16 36 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.10 2.52 6.07 -51.93 -0.32 2.21 16 39 H 0.03 0.64 5.46 -51.93 -0.28 0.36 16 40 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 41 H 0.10 1.19 7.58 -51.93 -0.39 0.80 16 42 H 0.07 0.76 8.03 -51.93 -0.42 0.34 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.08 0.75 7.82 -51.93 -0.41 0.35 16 45 H 0.07 0.50 6.97 -51.93 -0.36 0.13 16 46 H 0.41 1.36 9.10 45.56 0.41 1.77 16 LS Contribution 366.38 15.07 5.52 5.52 Total: -1.00 -32.96 366.38 -8.10 -41.06 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -6.42 Total: 4.19 kcal Atomic # 6 Polarization: -24.55 SS G_CDS: 0.78 Total: -23.77 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.12 Total: -37.95 kcal Atomic # 8 Polarization: -49.16 SS G_CDS: -2.57 Total: -51.73 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 47.65 SS G_CDS: -0.50 Total: 47.14 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.96 -8.10 -41.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599930764.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.851 kcal (2) G-P(sol) polarization free energy of solvation -32.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds