Wall clock time and date at job start Tue Mar 31 2020 17:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 110.78045 * 2 1 4 4 C 1.54366 * 110.75714 * 123.24630 * 2 1 3 5 5 N 1.47026 * 107.29110 * 140.50931 * 4 2 1 6 6 S 1.65594 * 125.65105 * 181.05830 * 5 4 2 7 7 O 1.42097 * 104.27652 * 26.10952 * 6 5 4 8 8 O 1.42107 * 104.27727 * 153.96719 * 6 5 4 9 9 C 1.81395 * 104.45031 * 270.03834 * 6 5 4 10 10 C 1.52996 * 109.47647 * 180.02562 * 9 6 5 11 11 C 1.53010 * 109.46593 * 300.00019 * 10 9 6 12 12 C 1.53002 * 109.47217 * 59.99436 * 10 9 6 13 13 C 1.50695 * 109.47368 * 180.02562 * 10 9 6 14 14 H 1.07997 * 120.00194 * 0.02562 * 13 10 9 15 15 C 1.37882 * 119.99711 * 179.97438 * 13 10 9 16 16 N 1.31517 * 120.00079 * 359.97438 * 15 13 10 17 17 Si 1.86803 * 119.99707 * 180.02562 * 15 13 10 18 18 H 1.48500 * 109.47420 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47344 * 120.00055 * 17 15 13 20 20 H 1.48501 * 109.46587 * 239.99436 * 17 15 13 21 21 C 1.47427 * 108.70093 * 1.08866 * 5 4 2 22 22 C 1.54917 * 104.83294 * 335.87668 * 21 5 4 23 23 C 1.52997 * 110.99865 * 278.89541 * 22 21 5 24 24 C 1.50696 * 111.00127 * 155.08291 * 22 21 5 25 25 O 1.20833 * 119.99655 * 244.57456 * 24 22 21 26 26 O 1.34222 * 120.00432 * 64.85723 * 24 22 21 27 27 H 1.09003 * 109.46867 * 183.23556 * 1 2 3 28 28 H 1.08996 * 109.47408 * 303.23424 * 1 2 3 29 29 H 1.09003 * 109.47504 * 63.23894 * 1 2 3 30 30 H 1.08993 * 109.84841 * 21.09937 * 4 2 1 31 31 H 1.09003 * 110.03044 * 260.01401 * 4 2 1 32 32 H 1.09005 * 109.47033 * 300.00403 * 9 6 5 33 33 H 1.09000 * 109.46979 * 59.99882 * 9 6 5 34 34 H 1.09004 * 109.47109 * 60.00190 * 11 10 9 35 35 H 1.09001 * 109.46725 * 179.97438 * 11 10 9 36 36 H 1.09000 * 109.47213 * 299.99780 * 11 10 9 37 37 H 1.09005 * 109.46463 * 60.00372 * 12 10 9 38 38 H 1.08994 * 109.47001 * 180.02562 * 12 10 9 39 39 H 1.09000 * 109.47318 * 300.00867 * 12 10 9 40 40 H 0.97001 * 119.99858 * 180.02562 * 16 15 13 41 41 H 1.09002 * 110.36988 * 217.03623 * 21 5 4 42 42 H 1.09005 * 110.36230 * 94.71121 * 21 5 4 43 43 H 1.08999 * 109.47345 * 295.41322 * 23 22 21 44 44 H 1.08992 * 109.47785 * 55.41984 * 23 22 21 45 45 H 1.09000 * 109.46729 * 175.42234 * 23 22 21 46 46 H 0.96701 * 117.00458 * 179.72178 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9166 1.0191 0.0000 4 6 2.0770 -0.7914 1.2072 5 7 3.2449 -1.5515 0.7384 6 16 4.1635 -2.5755 1.6603 7 8 3.2794 -3.0155 2.6819 8 8 4.7145 -3.4912 0.7236 9 6 5.4624 -1.5168 2.3550 10 6 6.3882 -2.3572 3.2367 11 6 5.5787 -2.9842 4.3738 12 6 7.0277 -3.4638 2.3956 13 6 7.4668 -1.4775 3.8144 14 1 7.4895 -0.4243 3.5767 15 6 8.4241 -2.0172 4.6471 16 7 8.3955 -3.2996 4.9377 17 14 9.7607 -0.9266 5.3637 18 1 9.5713 0.4669 4.8868 19 1 9.6831 -0.9578 6.8464 20 1 11.0908 -1.4223 4.9272 21 6 3.4632 -1.2506 -0.6882 22 6 2.0789 -0.7954 -1.2139 23 6 1.1888 -1.9994 -1.5284 24 6 2.2255 0.0945 -2.4212 25 8 1.8730 1.2490 -2.3671 26 8 2.7424 -0.3968 -3.5583 27 1 -0.3633 -1.0261 0.0580 28 1 -0.3634 0.5632 0.8595 29 1 -0.3634 0.4627 -0.9176 30 1 1.3138 -1.4756 1.5778 31 1 2.3754 -0.1048 1.9995 32 1 6.0392 -1.0704 1.5450 33 1 5.0067 -0.7283 2.9539 34 1 4.7983 -3.6204 3.9563 35 1 6.2382 -3.5833 5.0017 36 1 5.1231 -2.1959 4.9731 37 1 7.6043 -3.0170 1.5856 38 1 7.6869 -4.0627 3.0239 39 1 6.2472 -4.0999 1.9781 40 1 9.0688 -3.6791 5.5239 41 1 3.7952 -2.1436 -1.2179 42 1 4.1935 -0.4490 -0.7994 43 1 1.6266 -2.5709 -2.3468 44 1 1.1087 -2.6328 -0.6450 45 1 0.1969 -1.6522 -1.8177 46 1 2.8129 0.2110 -4.3071 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599930764.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:37 Heat of formation + Delta-G solvation = -187.534727 kcal Electronic energy + Delta-G solvation = -28795.897370 eV Core-core repulsion = 24811.774199 eV Total energy + Delta-G solvation = -3984.123171 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.89920 -39.64188 -38.16386 -38.13814 -37.11309 -36.92089 -34.17278 -33.63628 -32.22897 -28.43591 -27.76818 -27.70053 -27.26492 -27.05325 -24.98429 -22.72502 -21.31031 -20.22275 -19.93630 -18.95401 -18.85612 -17.98404 -17.71846 -17.15801 -16.89457 -16.63377 -16.55150 -15.78907 -15.64246 -15.08652 -14.88011 -14.62716 -14.50574 -14.43863 -14.11280 -13.84946 -13.73139 -13.52130 -13.28878 -13.14406 -13.03002 -12.91257 -12.83590 -12.77189 -12.73157 -12.52961 -12.51928 -12.20450 -12.14987 -11.99505 -11.96918 -11.77477 -11.60606 -11.57243 -11.46237 -11.36243 -10.65823 -10.42851 -9.98149 -8.04100 -6.22615 -0.72583 1.11501 1.42300 1.45539 1.54910 1.68944 2.07982 2.43497 2.85967 2.94931 3.18446 3.28087 3.39845 3.74386 3.97567 4.00705 4.15236 4.19433 4.27653 4.43921 4.47411 4.58370 4.60800 4.65968 4.74189 4.81443 4.84591 4.85204 4.86638 4.96964 5.01512 5.05337 5.07222 5.17606 5.22457 5.36002 5.37489 5.41928 5.51270 5.58860 5.64011 5.96827 6.10529 6.33254 6.82012 6.98055 7.45769 8.95925 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.020025 B = 0.003384 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.900751 B = 8271.252798 C = 8571.721853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.075 4.075 3 H 0.096 0.904 4 C 0.112 3.888 5 N -1.014 6.014 6 S 2.629 3.371 7 O -0.980 6.980 8 O -0.981 6.981 9 C -0.587 4.587 10 C 0.067 3.933 11 C -0.159 4.159 12 C -0.159 4.159 13 C -0.517 4.517 14 H 0.061 0.939 15 C 0.019 3.981 16 N -0.907 5.907 17 Si 0.954 3.046 18 H -0.267 1.267 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.123 3.877 22 C -0.062 4.062 23 C -0.138 4.138 24 C 0.506 3.494 25 O -0.533 6.533 26 O -0.506 6.506 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.033 0.967 35 H 0.071 0.929 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.071 0.929 39 H 0.033 0.967 40 H 0.261 0.739 41 H 0.096 0.904 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.084 0.916 46 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.030 7.028 -14.602 22.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.095 4.095 3 H 0.114 0.886 4 C -0.012 4.012 5 N -0.852 5.852 6 S 2.729 3.271 7 O -0.970 6.970 8 O -0.971 6.971 9 C -0.720 4.720 10 C 0.065 3.935 11 C -0.216 4.216 12 C -0.217 4.217 13 C -0.556 4.556 14 H 0.079 0.921 15 C -0.181 4.181 16 N -0.546 5.546 17 Si 0.780 3.220 18 H -0.191 1.191 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.002 4.002 22 C -0.065 4.065 23 C -0.195 4.195 24 C 0.348 3.652 25 O -0.423 6.423 26 O -0.320 6.320 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.152 0.848 33 H 0.153 0.847 34 H 0.051 0.949 35 H 0.090 0.910 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.090 0.910 39 H 0.052 0.948 40 H 0.071 0.929 41 H 0.114 0.886 42 H 0.100 0.900 43 H 0.096 0.904 44 H 0.089 0.911 45 H 0.103 0.897 46 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -15.193 5.939 -14.015 21.506 hybrid contribution 1.458 1.341 0.221 1.993 sum -13.735 7.280 -13.794 20.783 Atomic orbital electron populations 1.21834 0.91801 1.03250 1.03079 1.22221 0.98143 0.98981 0.90165 0.88555 1.22111 0.86984 0.94778 0.97341 1.58520 1.42689 1.63829 1.20166 1.04419 0.74846 0.74781 0.73076 1.93502 1.64173 1.79827 1.59525 1.93501 1.80300 1.60661 1.62642 1.30527 1.15429 1.14591 1.11437 1.17955 0.92332 0.92230 0.90966 1.22197 0.98229 1.00292 1.00924 1.22195 1.01102 0.99376 0.98980 1.21300 1.10717 0.94952 1.28596 0.92062 1.25664 0.99661 0.96195 0.96575 1.69946 1.35540 1.12410 1.36680 0.85568 0.79090 0.79344 0.77987 1.19102 1.20880 1.20895 1.22136 0.95631 1.02308 0.80139 1.21709 0.97773 0.96497 0.90532 1.21858 0.99379 0.94951 1.03333 1.22855 0.72207 0.85993 0.84113 1.90721 1.47338 1.19855 1.84376 1.84518 1.75323 1.48944 1.23187 0.90962 0.90710 0.91894 0.90107 0.89936 0.84831 0.84733 0.94857 0.91009 0.94113 0.94123 0.91029 0.94813 0.92891 0.88620 0.90024 0.90434 0.91107 0.89703 0.70805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 8.13 71.98 0.59 -1.36 16 2 C -0.08 -1.32 2.51 -9.59 -0.02 -1.34 16 3 H 0.10 1.77 7.44 -2.39 -0.02 1.75 16 4 C 0.11 2.38 6.14 86.74 0.53 2.91 16 5 N -1.01 -26.47 3.61 -506.31 -1.83 -28.30 16 6 S 2.63 93.80 4.68 -56.49 -0.26 93.53 16 7 O -0.98 -39.46 15.22 -127.65 -1.94 -41.41 16 8 O -0.98 -39.44 14.90 -127.65 -1.90 -41.34 16 9 C -0.59 -22.14 5.12 71.98 0.37 -21.77 16 10 C 0.07 3.23 0.52 -52.93 -0.03 3.20 16 11 C -0.16 -7.82 7.77 71.99 0.56 -7.26 16 12 C -0.16 -7.82 7.78 71.98 0.56 -7.26 16 13 C -0.52 -26.83 8.01 25.60 0.21 -26.62 16 14 H 0.06 3.08 7.74 -2.91 -0.02 3.05 16 15 C 0.02 0.98 5.15 84.66 0.44 1.41 16 16 N -0.91 -49.98 9.35 21.45 0.20 -49.78 16 17 Si 0.95 42.03 29.54 68.60 2.03 44.05 16 18 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 19 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 20 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 21 C 0.12 2.71 5.99 86.86 0.52 3.23 16 22 C -0.06 -1.12 0.71 -51.54 -0.04 -1.16 16 23 C -0.14 -2.15 7.35 71.98 0.53 -1.62 16 24 C 0.51 8.92 7.01 71.23 0.50 9.42 16 25 O -0.53 -11.90 16.51 21.94 0.36 -11.54 16 26 O -0.51 -6.43 13.37 -51.34 -0.69 -7.12 16 27 H 0.07 0.88 6.71 -2.39 -0.02 0.87 16 28 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.08 1.67 7.77 -2.39 -0.02 1.66 16 31 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.13 4.53 8.14 -2.39 -0.02 4.51 16 33 H 0.13 4.55 8.14 -2.39 -0.02 4.53 16 34 H 0.03 1.56 5.47 -2.39 -0.01 1.54 16 35 H 0.07 3.87 6.07 -2.39 -0.01 3.85 16 36 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 38 H 0.07 3.86 6.07 -2.39 -0.01 3.84 16 39 H 0.03 1.58 5.46 -2.39 -0.01 1.56 16 40 H 0.26 13.76 8.31 -92.71 -0.77 12.99 16 41 H 0.10 2.17 7.58 -2.39 -0.02 2.15 16 42 H 0.08 1.60 8.03 -2.38 -0.02 1.58 16 43 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.07 1.23 7.82 -2.39 -0.02 1.21 16 45 H 0.08 1.02 6.97 -2.39 -0.02 1.00 16 46 H 0.43 1.71 9.10 -74.06 -0.67 1.03 16 Total: -1.00 -69.75 366.38 0.99 -68.76 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: 0.32 Total: 21.35 kcal Atomic # 6 Polarization: -52.92 SS G_CDS: 4.71 Total: -48.21 kcal Atomic # 7 Polarization: -76.45 SS G_CDS: -1.63 Total: -78.08 kcal Atomic # 8 Polarization: -97.24 SS G_CDS: -4.17 Total: -101.41 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.05 kcal Atomic # 16 Polarization: 93.80 SS G_CDS: -0.26 Total: 93.53 kcal Total: -69.75 0.99 -68.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599930764.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.773 kcal (2) G-P(sol) polarization free energy of solvation -69.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds