Wall clock time and date at job start Tue Mar 31 2020 18:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.47402 * 2 1 4 4 C 1.50701 * 109.47188 * 119.99952 * 2 1 3 5 5 O 1.20829 * 119.99937 * 119.99638 * 4 2 1 6 6 O 1.34228 * 120.00072 * 300.00108 * 4 2 1 7 7 N 1.46502 * 109.47227 * 239.99758 * 2 1 3 8 8 C 1.34778 * 120.00004 * 119.29271 * 7 2 1 9 9 O 1.21281 * 119.99915 * 5.07271 * 8 7 2 10 10 C 1.50699 * 120.00123 * 185.06806 * 8 7 2 11 11 C 1.50702 * 109.47250 * 184.89486 * 10 8 7 12 12 C 1.38297 * 119.92651 * 269.72924 * 11 10 8 13 13 C 1.38105 * 120.06543 * 179.72563 * 12 11 10 14 14 C 1.38874 * 119.93216 * 0.56485 * 13 12 11 15 15 O 1.35749 * 120.06876 * 179.68531 * 14 13 12 16 16 C 1.34833 * 116.99640 * 185.76043 * 15 14 13 17 17 H 1.08004 * 120.00313 * 5.27971 * 16 15 14 18 18 C 1.38656 * 120.00101 * 185.27963 * 16 15 14 19 19 N 1.31561 * 119.99388 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00416 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47200 * 59.99662 * 20 18 16 22 22 H 1.48500 * 109.47428 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47037 * 300.00195 * 20 18 16 24 24 C 1.38884 * 119.86055 * 359.70628 * 14 13 12 25 25 C 1.38096 * 119.93060 * 359.97438 * 24 14 13 26 26 C 1.46504 * 119.99906 * 299.29869 * 7 2 1 27 27 C 1.52993 * 117.51697 * 354.60901 * 26 7 2 28 28 C 1.52996 * 60.00199 * 107.48192 * 27 26 7 29 29 H 1.08993 * 109.46851 * 300.52472 * 1 2 3 30 30 H 1.08998 * 109.46617 * 60.52549 * 1 2 3 31 31 H 1.08994 * 109.46838 * 180.52324 * 1 2 3 32 32 H 0.96697 * 117.00546 * 180.02562 * 6 4 2 33 33 H 1.09004 * 109.47036 * 304.89046 * 10 8 7 34 34 H 1.08997 * 109.47291 * 64.89255 * 10 8 7 35 35 H 1.07998 * 119.96822 * 359.96959 * 12 11 10 36 36 H 1.08005 * 120.03261 * 180.27376 * 13 12 11 37 37 H 0.97007 * 119.99581 * 180.02562 * 19 18 16 38 38 H 1.08001 * 120.03345 * 179.97438 * 24 14 13 39 39 H 1.08006 * 119.96647 * 180.02562 * 25 24 14 40 40 H 1.09001 * 115.54394 * 208.90732 * 26 7 2 41 41 H 1.09008 * 117.49816 * 214.97038 * 27 26 7 42 42 H 1.08994 * 117.50122 * 359.97438 * 27 26 7 43 43 H 1.09003 * 117.50075 * 252.51263 * 28 27 26 44 44 H 1.09007 * 117.50179 * 107.48624 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.7270 -1.6928 1.1196 6 8 1.7081 -0.2518 2.4496 7 7 2.0184 -0.6907 -1.1961 8 6 2.7815 -0.0316 -2.0905 9 8 3.1404 1.1040 -1.8613 10 6 3.1888 -0.7057 -3.3753 11 6 4.1290 0.1920 -4.1376 12 6 3.6266 1.1016 -5.0501 13 6 4.4852 1.9297 -5.7461 14 6 5.8553 1.8402 -5.5374 15 8 6.7022 2.6483 -6.2246 16 6 8.0229 2.4290 -6.0640 17 1 8.3633 1.5866 -5.4801 18 6 8.9440 3.2849 -6.6485 19 7 8.5292 4.3113 -7.3593 20 14 10.7736 2.9807 -6.4266 21 1 11.1239 1.6466 -6.9769 22 1 11.5406 4.0293 -7.1458 23 1 11.1108 3.0238 -4.9810 24 6 6.3571 0.9218 -4.6243 25 6 5.4929 0.1011 -3.9267 26 6 1.6772 -2.0977 -1.4202 27 6 0.9158 -2.8257 -0.3107 28 6 0.1990 -2.4450 -1.6076 29 1 -0.3633 0.5219 0.8852 30 1 -0.3632 0.5057 -0.8947 31 1 -0.3633 -1.0276 0.0094 32 1 2.0542 -0.7405 3.2089 33 1 3.6891 -1.6473 -3.1488 34 1 2.3030 -0.9011 -3.9797 35 1 2.5614 1.1672 -5.2158 36 1 4.0919 2.6429 -6.4554 37 1 9.1736 4.9099 -7.7685 38 1 7.4221 0.8495 -4.4601 39 1 5.8825 -0.6130 -3.2162 40 1 2.4058 -2.6728 -1.9917 41 1 1.1434 -3.8799 -0.1522 42 1 0.6689 -2.2580 0.5864 43 1 -0.5197 -1.6266 -1.5639 44 1 -0.0450 -3.2486 -2.3025 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001602815076.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:31 Heat of formation + Delta-G solvation = -75.680725 kcal Electronic energy + Delta-G solvation = -28350.053593 eV Core-core repulsion = 24235.336824 eV Total energy + Delta-G solvation = -4114.716769 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.45154 -39.77589 -38.87472 -37.84056 -36.43650 -36.33333 -34.06854 -32.58862 -32.06772 -30.72828 -30.09750 -26.74081 -25.47942 -24.95889 -22.94511 -22.73983 -22.07677 -21.90530 -20.55414 -19.47338 -18.39296 -17.93781 -17.69982 -17.07664 -16.90097 -15.99291 -15.64666 -15.31840 -15.01379 -14.61978 -14.46946 -14.28277 -14.09778 -13.75153 -13.61185 -13.48112 -13.27552 -13.08844 -12.64777 -12.63359 -12.47659 -12.16504 -11.84701 -11.63618 -11.51921 -11.39600 -11.34355 -11.22086 -10.96891 -10.78629 -10.71818 -10.64354 -10.57239 -10.39145 -9.77796 -9.31245 -8.84683 -8.77762 -8.10190 -7.12308 -6.40889 -3.99348 1.83551 2.10862 2.30043 2.40673 2.58165 2.93037 3.16072 3.17520 3.19922 3.55549 4.00570 4.24809 4.38462 4.47743 4.53562 4.62142 4.65428 4.82864 4.91079 5.14086 5.14526 5.20216 5.26560 5.29006 5.32769 5.36576 5.49117 5.54427 5.68085 5.71893 5.74191 5.77562 5.90149 6.09029 6.14606 6.26956 6.46974 6.74544 6.95402 7.08351 7.15069 7.28738 7.41305 7.49398 7.53135 7.88589 8.04317 8.10928 9.04770 9.75683 10.77237 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.021208 B = 0.002386 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.938603 B =11729.996528 C =12158.013412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.146 3.854 3 H 0.140 0.860 4 C 0.466 3.534 5 O -0.495 6.495 6 O -0.515 6.515 7 N -0.579 5.579 8 C 0.522 3.478 9 O -0.513 6.513 10 C -0.073 4.073 11 C -0.173 4.173 12 C -0.057 4.057 13 C -0.192 4.192 14 C 0.157 3.843 15 O -0.178 6.178 16 C -0.391 4.391 17 H 0.091 0.909 18 C 0.039 3.961 19 N -0.863 5.863 20 Si 0.940 3.060 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.270 1.270 24 C -0.232 4.232 25 C -0.057 4.057 26 C 0.085 3.915 27 C -0.174 4.174 28 C -0.206 4.206 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.410 0.590 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.109 0.891 36 H 0.117 0.883 37 H 0.270 0.730 38 H 0.126 0.874 39 H 0.103 0.897 40 H 0.135 0.865 41 H 0.104 0.896 42 H 0.093 0.907 43 H 0.106 0.894 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.081 -14.353 15.467 27.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.040 3.960 3 H 0.157 0.843 4 C 0.306 3.694 5 O -0.382 6.382 6 O -0.327 6.327 7 N -0.313 5.313 8 C 0.312 3.688 9 O -0.386 6.386 10 C -0.113 4.113 11 C -0.175 4.175 12 C -0.075 4.075 13 C -0.211 4.211 14 C 0.103 3.897 15 O -0.081 6.081 16 C -0.467 4.467 17 H 0.108 0.892 18 C -0.165 4.165 19 N -0.498 5.498 20 Si 0.765 3.235 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.195 1.195 24 C -0.251 4.251 25 C -0.076 4.076 26 C -0.020 4.020 27 C -0.212 4.212 28 C -0.245 4.245 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.269 0.731 33 H 0.110 0.890 34 H 0.116 0.884 35 H 0.127 0.873 36 H 0.135 0.865 37 H 0.080 0.920 38 H 0.144 0.856 39 H 0.121 0.879 40 H 0.152 0.848 41 H 0.122 0.878 42 H 0.111 0.889 43 H 0.124 0.876 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -17.721 -13.361 14.902 26.733 hybrid contribution 1.246 -0.582 0.910 1.649 sum -16.475 -13.943 15.812 26.756 Atomic orbital electron populations 1.22586 0.91714 1.04473 1.04432 1.20426 0.96102 0.98611 0.80841 0.84261 1.23864 0.77613 0.82867 0.85042 1.90766 1.34954 1.25496 1.86967 1.84531 1.72278 1.59187 1.16685 1.47372 1.52780 1.10814 1.20380 1.21208 0.76075 0.86485 0.85054 1.90751 1.52362 1.18401 1.77086 1.20418 1.00107 0.98521 0.92223 1.18646 0.93008 1.02857 1.02949 1.20390 0.97809 0.94231 0.95079 1.20149 0.90783 1.04382 1.05805 1.19397 0.90589 0.89801 0.89875 1.83991 1.16912 1.49425 1.57771 1.21275 0.78254 1.12584 1.34614 0.89176 1.25283 1.00190 0.94963 0.96082 1.70037 1.35213 1.13908 1.30687 0.85791 0.80508 0.78367 0.78826 1.19510 1.20290 1.19519 1.21104 1.00359 1.01401 1.02263 1.20525 0.92448 0.97499 0.97104 1.21656 0.94542 0.82299 1.03496 1.23391 1.03245 1.01561 0.92985 1.23857 0.95981 1.04242 1.00371 0.90021 0.90204 0.90106 0.73070 0.88955 0.88405 0.87334 0.86530 0.92005 0.85604 0.87854 0.84783 0.87811 0.88876 0.87625 0.87829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.19 7.84 37.16 0.29 -0.90 16 2 C 0.15 1.46 3.07 -69.08 -0.21 1.25 16 3 H 0.14 1.61 6.91 -51.93 -0.36 1.25 16 4 C 0.47 4.64 5.81 36.01 0.21 4.85 16 5 O -0.50 -6.13 14.45 -18.75 -0.27 -6.40 16 6 O -0.52 -3.69 13.34 -39.25 -0.52 -4.22 16 7 N -0.58 -6.42 2.51 -159.89 -0.40 -6.82 16 8 C 0.52 7.47 7.65 -10.99 -0.08 7.38 16 9 O -0.51 -9.56 15.38 5.56 0.09 -9.48 16 10 C -0.07 -0.95 4.67 -29.03 -0.14 -1.08 16 11 C -0.17 -3.06 4.38 -104.58 -0.46 -3.52 16 12 C -0.06 -1.06 9.69 -39.61 -0.38 -1.44 16 13 C -0.19 -4.23 9.99 -39.39 -0.39 -4.62 16 14 C 0.16 3.95 6.65 -39.11 -0.26 3.69 16 15 O -0.18 -5.22 9.76 0.04 0.00 -5.22 16 16 C -0.39 -11.21 9.44 30.89 0.29 -10.92 16 17 H 0.09 2.39 5.29 -52.48 -0.28 2.12 16 18 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 19 N -0.86 -25.82 13.67 55.48 0.76 -25.06 16 20 Si 0.94 20.97 29.55 -169.99 -5.02 15.95 16 21 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 22 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 24 C -0.23 -5.29 9.13 -39.39 -0.36 -5.65 16 25 C -0.06 -1.12 9.69 -39.61 -0.38 -1.50 16 26 C 0.08 0.73 5.20 -67.93 -0.35 0.38 16 27 C -0.17 -1.30 7.58 -26.74 -0.20 -1.50 16 28 C -0.21 -1.30 9.58 -26.73 -0.26 -1.55 16 29 H 0.08 0.47 8.12 -51.93 -0.42 0.04 16 30 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16 31 H 0.08 0.49 3.65 -51.93 -0.19 0.30 16 32 H 0.41 1.28 9.10 45.56 0.41 1.69 16 33 H 0.09 1.01 7.09 -51.93 -0.37 0.64 16 34 H 0.10 1.02 8.08 -51.93 -0.42 0.60 16 35 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 36 H 0.12 2.46 8.06 -52.48 -0.42 2.04 16 37 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.13 2.87 5.71 -52.49 -0.30 2.57 16 39 H 0.10 1.75 8.06 -52.48 -0.42 1.33 16 40 H 0.13 1.04 6.76 -51.93 -0.35 0.69 16 41 H 0.10 0.71 8.14 -51.92 -0.42 0.28 16 42 H 0.09 0.73 3.98 -51.93 -0.21 0.53 16 43 H 0.11 0.64 5.78 -51.93 -0.30 0.34 16 44 H 0.10 0.52 8.14 -51.92 -0.42 0.09 16 LS Contribution 363.21 15.07 5.47 5.47 Total: -1.00 -36.31 363.21 -7.14 -43.44 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -4.45 Total: 6.46 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -2.79 Total: -14.14 kcal Atomic # 7 Polarization: -32.24 SS G_CDS: 0.36 Total: -31.88 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -0.71 Total: -25.31 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.31 -7.14 -43.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602815076.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.236 kcal (2) G-P(sol) polarization free energy of solvation -36.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds