Wall clock time and date at job start Tue Mar 31 2020 18:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.47402 * 2 1 4 4 C 1.50701 * 109.47188 * 119.99952 * 2 1 3 5 5 O 1.20829 * 119.99937 * 119.99638 * 4 2 1 6 6 O 1.34228 * 120.00072 * 300.00108 * 4 2 1 7 7 N 1.46502 * 109.47227 * 239.99758 * 2 1 3 8 8 C 1.34778 * 120.00004 * 119.29271 * 7 2 1 9 9 O 1.21281 * 119.99915 * 5.07271 * 8 7 2 10 10 C 1.50699 * 120.00123 * 185.06806 * 8 7 2 11 11 C 1.50702 * 109.47250 * 184.89486 * 10 8 7 12 12 C 1.38297 * 119.92651 * 269.72924 * 11 10 8 13 13 C 1.38105 * 120.06543 * 179.72563 * 12 11 10 14 14 C 1.38874 * 119.93216 * 0.56485 * 13 12 11 15 15 O 1.35749 * 120.06876 * 179.68531 * 14 13 12 16 16 C 1.34833 * 116.99640 * 185.76043 * 15 14 13 17 17 H 1.08004 * 120.00313 * 5.27971 * 16 15 14 18 18 C 1.38656 * 120.00101 * 185.27963 * 16 15 14 19 19 N 1.31561 * 119.99388 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00416 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47200 * 59.99662 * 20 18 16 22 22 H 1.48500 * 109.47428 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47037 * 300.00195 * 20 18 16 24 24 C 1.38884 * 119.86055 * 359.70628 * 14 13 12 25 25 C 1.38096 * 119.93060 * 359.97438 * 24 14 13 26 26 C 1.46504 * 119.99906 * 299.29869 * 7 2 1 27 27 C 1.52993 * 117.51697 * 354.60901 * 26 7 2 28 28 C 1.52996 * 60.00199 * 107.48192 * 27 26 7 29 29 H 1.08993 * 109.46851 * 300.52472 * 1 2 3 30 30 H 1.08998 * 109.46617 * 60.52549 * 1 2 3 31 31 H 1.08994 * 109.46838 * 180.52324 * 1 2 3 32 32 H 0.96697 * 117.00546 * 180.02562 * 6 4 2 33 33 H 1.09004 * 109.47036 * 304.89046 * 10 8 7 34 34 H 1.08997 * 109.47291 * 64.89255 * 10 8 7 35 35 H 1.07998 * 119.96822 * 359.96959 * 12 11 10 36 36 H 1.08005 * 120.03261 * 180.27376 * 13 12 11 37 37 H 0.97007 * 119.99581 * 180.02562 * 19 18 16 38 38 H 1.08001 * 120.03345 * 179.97438 * 24 14 13 39 39 H 1.08006 * 119.96647 * 180.02562 * 25 24 14 40 40 H 1.09001 * 115.54394 * 208.90732 * 26 7 2 41 41 H 1.09008 * 117.49816 * 214.97038 * 27 26 7 42 42 H 1.08994 * 117.50122 * 359.97438 * 27 26 7 43 43 H 1.09003 * 117.50075 * 252.51263 * 28 27 26 44 44 H 1.09007 * 117.50179 * 107.48624 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.7270 -1.6928 1.1196 6 8 1.7081 -0.2518 2.4496 7 7 2.0184 -0.6907 -1.1961 8 6 2.7815 -0.0316 -2.0905 9 8 3.1404 1.1040 -1.8613 10 6 3.1888 -0.7057 -3.3753 11 6 4.1290 0.1920 -4.1376 12 6 3.6266 1.1016 -5.0501 13 6 4.4852 1.9297 -5.7461 14 6 5.8553 1.8402 -5.5374 15 8 6.7022 2.6483 -6.2246 16 6 8.0229 2.4290 -6.0640 17 1 8.3633 1.5866 -5.4801 18 6 8.9440 3.2849 -6.6485 19 7 8.5292 4.3113 -7.3593 20 14 10.7736 2.9807 -6.4266 21 1 11.1239 1.6466 -6.9769 22 1 11.5406 4.0293 -7.1458 23 1 11.1108 3.0238 -4.9810 24 6 6.3571 0.9218 -4.6243 25 6 5.4929 0.1011 -3.9267 26 6 1.6772 -2.0977 -1.4202 27 6 0.9158 -2.8257 -0.3107 28 6 0.1990 -2.4450 -1.6076 29 1 -0.3633 0.5219 0.8852 30 1 -0.3632 0.5057 -0.8947 31 1 -0.3633 -1.0276 0.0094 32 1 2.0542 -0.7405 3.2089 33 1 3.6891 -1.6473 -3.1488 34 1 2.3030 -0.9011 -3.9797 35 1 2.5614 1.1672 -5.2158 36 1 4.0919 2.6429 -6.4554 37 1 9.1736 4.9099 -7.7685 38 1 7.4221 0.8495 -4.4601 39 1 5.8825 -0.6130 -3.2162 40 1 2.4058 -2.6728 -1.9917 41 1 1.1434 -3.8799 -0.1522 42 1 0.6689 -2.2580 0.5864 43 1 -0.5197 -1.6266 -1.5639 44 1 -0.0450 -3.2486 -2.3025 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001602815076.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:30 Heat of formation + Delta-G solvation = -100.558831 kcal Electronic energy + Delta-G solvation = -28351.132389 eV Core-core repulsion = 24235.336824 eV Total energy + Delta-G solvation = -4115.795565 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.24947 -40.96205 -40.37590 -38.79893 -38.07894 -37.05154 -34.81880 -34.40470 -33.38178 -31.93030 -31.75424 -28.23327 -27.05800 -26.02515 -23.66865 -23.62820 -23.31689 -23.07528 -21.89576 -20.31541 -19.84306 -19.22409 -18.81779 -18.50601 -17.93499 -16.84072 -16.62779 -16.50422 -16.32511 -15.97883 -15.81114 -15.61395 -15.48168 -15.11290 -14.91787 -14.43674 -14.36693 -14.21736 -14.08855 -13.85499 -13.57982 -13.27111 -12.95603 -12.83303 -12.78419 -12.48090 -12.31922 -12.25139 -12.17111 -12.13833 -12.12243 -11.97422 -11.60853 -11.36925 -11.20736 -10.88259 -10.73081 -9.76442 -9.64114 -8.90755 -8.47663 -6.15755 0.61479 0.65049 1.07282 1.33393 1.38655 1.44900 1.50048 1.61987 2.17489 2.19686 2.80992 2.98273 3.14942 3.51368 3.58640 3.73704 3.82374 3.92243 3.96145 4.05319 4.07818 4.12333 4.19063 4.21940 4.45896 4.58984 4.61464 4.68152 4.69642 4.78697 4.80974 4.91296 5.01794 5.09555 5.13696 5.18377 5.24457 5.30072 5.33618 5.53269 5.56565 5.71733 5.77411 6.02303 6.17815 6.29104 6.89648 6.96814 7.08801 7.78148 8.75690 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.021208 B = 0.002386 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.938603 B =11729.996528 C =12158.013412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.137 3.863 3 H 0.119 0.881 4 C 0.472 3.528 5 O -0.523 6.523 6 O -0.508 6.508 7 N -0.571 5.571 8 C 0.521 3.479 9 O -0.570 6.570 10 C -0.071 4.071 11 C -0.147 4.147 12 C -0.052 4.052 13 C -0.205 4.205 14 C 0.114 3.886 15 O -0.232 6.232 16 C -0.415 4.415 17 H 0.099 0.901 18 C -0.023 4.023 19 N -0.921 5.921 20 Si 1.019 2.981 21 H -0.255 1.255 22 H -0.270 1.270 23 H -0.260 1.260 24 C -0.244 4.244 25 C -0.063 4.063 26 C 0.057 3.943 27 C -0.176 4.176 28 C -0.182 4.182 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.429 0.571 33 H 0.122 0.878 34 H 0.136 0.864 35 H 0.149 0.851 36 H 0.114 0.886 37 H 0.273 0.727 38 H 0.116 0.884 39 H 0.133 0.867 40 H 0.145 0.855 41 H 0.110 0.890 42 H 0.087 0.913 43 H 0.110 0.890 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.232 -17.532 17.299 31.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.031 3.969 3 H 0.137 0.863 4 C 0.313 3.687 5 O -0.412 6.412 6 O -0.322 6.322 7 N -0.303 5.303 8 C 0.312 3.688 9 O -0.448 6.448 10 C -0.110 4.110 11 C -0.148 4.148 12 C -0.070 4.070 13 C -0.224 4.224 14 C 0.063 3.937 15 O -0.139 6.139 16 C -0.491 4.491 17 H 0.116 0.884 18 C -0.221 4.221 19 N -0.559 5.559 20 Si 0.838 3.162 21 H -0.180 1.180 22 H -0.194 1.194 23 H -0.184 1.184 24 C -0.263 4.263 25 C -0.081 4.081 26 C -0.046 4.046 27 C -0.214 4.214 28 C -0.220 4.220 29 H 0.112 0.888 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.291 0.709 33 H 0.140 0.860 34 H 0.154 0.846 35 H 0.167 0.833 36 H 0.132 0.868 37 H 0.082 0.918 38 H 0.134 0.866 39 H 0.151 0.849 40 H 0.163 0.837 41 H 0.128 0.872 42 H 0.106 0.894 43 H 0.128 0.872 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -19.952 -16.619 16.800 30.927 hybrid contribution 1.554 0.201 0.597 1.677 sum -18.398 -16.419 17.397 30.178 Atomic orbital electron populations 1.22556 0.89092 1.05425 1.05186 1.20581 0.98083 0.97459 0.80748 0.86299 1.23778 0.76938 0.82280 0.85708 1.90756 1.36202 1.26734 1.87469 1.84484 1.71914 1.59149 1.16625 1.47304 1.51409 1.11754 1.19839 1.21273 0.75978 0.85818 0.85753 1.90750 1.54898 1.20772 1.78396 1.20532 1.00719 0.98105 0.91641 1.19231 0.93241 1.01421 1.00922 1.20868 0.99348 0.92877 0.93945 1.20451 0.90194 1.05290 1.06467 1.19944 0.91516 0.90814 0.91391 1.83947 1.17498 1.51903 1.60562 1.21768 0.78798 1.13387 1.35142 0.88366 1.26604 1.05619 0.94418 0.95409 1.70185 1.37158 1.15657 1.32944 0.84654 0.73378 0.78932 0.79271 1.17952 1.19398 1.18430 1.21207 1.00618 1.01907 1.02603 1.20910 0.93106 0.97239 0.96844 1.22000 0.96522 0.80878 1.05201 1.23420 1.03184 1.01649 0.93118 1.23911 0.94025 1.04466 0.99589 0.88811 0.89976 0.88958 0.70875 0.85961 0.84584 0.83290 0.86763 0.91797 0.86619 0.84893 0.83724 0.87203 0.89447 0.87172 0.85819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.80 7.84 71.98 0.56 -1.24 16 2 C 0.14 2.49 3.07 44.25 0.14 2.63 16 3 H 0.12 2.70 6.91 -2.39 -0.02 2.68 16 4 C 0.47 8.52 5.81 71.24 0.41 8.93 16 5 O -0.52 -11.94 14.45 21.95 0.32 -11.62 16 6 O -0.51 -6.20 13.34 -51.39 -0.69 -6.89 16 7 N -0.57 -11.05 2.51 -778.17 -1.95 -13.00 16 8 C 0.52 13.52 7.65 87.66 0.67 14.19 16 9 O -0.57 -20.72 15.38 -3.03 -0.05 -20.77 16 10 C -0.07 -1.53 4.67 29.10 0.14 -1.39 16 11 C -0.15 -4.81 4.38 -19.83 -0.09 -4.90 16 12 C -0.05 -1.85 9.69 22.25 0.22 -1.64 16 13 C -0.20 -9.24 9.99 22.39 0.22 -9.02 16 14 C 0.11 6.01 6.65 22.58 0.15 6.16 16 15 O -0.23 -14.65 9.76 -22.76 -0.22 -14.87 16 16 C -0.41 -25.21 9.44 67.92 0.64 -24.57 16 17 H 0.10 5.51 5.29 -2.91 -0.02 5.50 16 18 C -0.02 -1.36 5.49 84.83 0.47 -0.90 16 19 N -0.92 -58.25 13.67 21.61 0.30 -57.96 16 20 Si 1.02 44.35 29.55 68.60 2.03 46.38 16 21 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 22 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 23 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 24 C -0.24 -11.46 9.13 22.39 0.20 -11.26 16 25 C -0.06 -2.36 9.69 22.25 0.22 -2.15 16 26 C 0.06 0.76 5.20 44.99 0.23 1.00 16 27 C -0.18 -2.00 7.58 30.59 0.23 -1.77 16 28 C -0.18 -1.45 9.58 30.59 0.29 -1.16 16 29 H 0.09 0.81 8.12 -2.39 -0.02 0.79 16 30 H 0.08 0.88 8.10 -2.39 -0.02 0.86 16 31 H 0.09 0.80 3.65 -2.39 -0.01 0.79 16 32 H 0.43 1.69 9.10 -74.06 -0.67 1.02 16 33 H 0.12 2.01 7.09 -2.38 -0.02 1.99 16 34 H 0.14 1.99 8.08 -2.39 -0.02 1.97 16 35 H 0.15 4.04 8.06 -2.91 -0.02 4.02 16 36 H 0.11 5.06 8.06 -2.91 -0.02 5.04 16 37 H 0.27 15.79 8.31 -92.70 -0.77 15.02 16 38 H 0.12 5.53 5.71 -2.91 -0.02 5.51 16 39 H 0.13 4.16 8.06 -2.91 -0.02 4.14 16 40 H 0.15 1.58 6.76 -2.39 -0.02 1.57 16 41 H 0.11 1.12 8.14 -2.38 -0.02 1.10 16 42 H 0.09 1.11 3.98 -2.39 -0.01 1.10 16 43 H 0.11 0.82 5.78 -2.39 -0.01 0.81 16 44 H 0.12 0.56 8.14 -2.38 -0.02 0.54 16 Total: -1.00 -86.39 363.21 4.84 -81.55 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: 0.40 Total: 24.27 kcal Atomic # 6 Polarization: -31.80 SS G_CDS: 4.71 Total: -27.09 kcal Atomic # 7 Polarization: -69.30 SS G_CDS: -1.66 Total: -70.96 kcal Atomic # 8 Polarization: -53.51 SS G_CDS: -0.64 Total: -54.15 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -86.39 4.84 -81.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602815076.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.010 kcal (2) G-P(sol) polarization free energy of solvation -86.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds