Wall clock time and date at job start Tue Mar 31 2020 18:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47085 * 2 1 4 4 C 1.50697 * 109.47212 * 120.00403 * 2 1 3 5 5 H 1.08003 * 120.00490 * 119.99913 * 4 2 1 6 6 C 1.37878 * 119.99959 * 300.00407 * 4 2 1 7 7 N 1.31514 * 120.00229 * 180.02562 * 6 4 2 8 8 Si 1.86805 * 119.99879 * 359.97438 * 6 4 2 9 9 H 1.48502 * 109.46611 * 90.00419 * 8 6 4 10 10 H 1.48498 * 109.47195 * 210.00137 * 8 6 4 11 11 H 1.48492 * 109.47104 * 330.00656 * 8 6 4 12 12 C 1.50702 * 109.47471 * 240.00186 * 2 1 3 13 13 O 1.21278 * 120.00232 * 240.00540 * 12 2 1 14 14 N 1.34784 * 119.99513 * 59.99982 * 12 2 1 15 15 C 1.48145 * 127.83336 * 179.97438 * 14 12 2 16 16 C 1.54395 * 104.61454 * 219.58574 * 15 14 12 17 17 H 1.09002 * 110.34481 * 95.00280 * 16 15 14 18 18 C 1.50698 * 110.43104 * 217.21839 * 16 15 14 19 19 C 1.38265 * 119.94474 * 56.78747 * 18 16 15 20 20 C 1.38154 * 120.05233 * 179.72757 * 19 18 16 21 21 C 1.38726 * 119.94520 * 0.54397 * 20 19 18 22 22 O 1.35898 * 120.05581 * 179.74508 * 21 20 19 23 23 C 1.38732 * 119.88704 * 359.73276 * 21 20 19 24 24 C 1.38142 * 119.94578 * 359.97438 * 23 21 20 25 25 C 1.54281 * 104.95731 * 336.13228 * 16 15 14 26 26 H 1.09003 * 110.34267 * 241.12661 * 25 16 15 27 27 C 1.50699 * 110.34381 * 118.97869 * 25 16 15 28 28 O 1.20828 * 119.99982 * 359.97438 * 27 25 16 29 29 O 1.34233 * 120.00338 * 179.97438 * 27 25 16 30 30 C 1.48140 * 127.83889 * 359.97438 * 14 12 2 31 31 H 1.09000 * 109.46961 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46998 * 299.99668 * 1 2 3 33 33 H 1.09005 * 109.47059 * 59.99630 * 1 2 3 34 34 H 0.96998 * 120.00507 * 179.97438 * 7 6 4 35 35 H 1.08990 * 110.41068 * 100.80264 * 15 14 12 36 36 H 1.09000 * 110.40585 * 338.36403 * 15 14 12 37 37 H 1.07998 * 119.97351 * 0.02562 * 19 18 16 38 38 H 1.07997 * 120.02113 * 180.27474 * 20 19 18 39 39 H 0.96694 * 114.00289 * 269.98633 * 22 21 20 40 40 H 1.08005 * 120.02813 * 180.02562 * 23 21 20 41 41 H 1.08004 * 119.97052 * 180.02562 * 24 23 21 42 42 H 0.96704 * 116.99673 * 179.97438 * 29 27 25 43 43 H 1.08998 * 110.41105 * 21.63503 * 30 14 12 44 44 H 1.08999 * 110.51120 * 259.24571 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 2.1380 -0.8593 3.5565 8 14 0.6257 1.2796 2.6541 9 1 -0.8022 0.8741 2.6993 10 1 0.9769 1.9951 3.9071 11 1 0.8489 2.1771 1.4924 12 6 2.0324 -0.7104 -1.2305 13 8 2.7296 -1.6965 -1.1192 14 7 1.7068 -0.2498 -2.4546 15 6 2.1013 -0.8066 -3.7695 16 6 2.3918 0.4313 -4.6454 17 1 3.4563 0.6651 -4.6299 18 6 1.9287 0.1952 -6.0599 19 6 0.6097 -0.1372 -6.3079 20 6 0.1815 -0.3486 -7.6043 21 6 1.0786 -0.2381 -8.6566 22 8 0.6609 -0.4506 -9.9322 23 6 2.4028 0.0900 -8.4046 24 6 2.8247 0.3063 -7.1071 25 6 1.5821 1.5749 -3.9998 26 1 0.8482 1.9647 -4.7052 27 6 2.5037 2.6759 -3.5422 28 8 3.6962 2.5733 -3.7076 29 8 1.9999 3.7706 -2.9509 30 6 0.8733 0.9280 -2.7903 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.9039 -0.5278 4.4375 35 1 1.2853 -1.3904 -4.1954 36 1 2.9968 -1.4198 -3.6694 37 1 -0.0874 -0.2270 -5.4880 38 1 -0.8499 -0.6039 -7.7978 39 1 0.7376 -1.3695 -10.2233 40 1 3.1031 0.1770 -9.2222 41 1 3.8554 0.5621 -6.9104 42 1 2.6304 4.4496 -2.6743 43 1 0.8423 1.6233 -1.9515 44 1 -0.1353 0.6170 -3.0627 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604061817.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:20 Heat of formation + Delta-G solvation = -129.668092 kcal Electronic energy + Delta-G solvation = -29126.561168 eV Core-core repulsion = 25009.503331 eV Total energy + Delta-G solvation = -4117.057837 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.14876 -39.95486 -39.19603 -37.72427 -36.42957 -36.11362 -33.95028 -32.40443 -31.32275 -31.11716 -30.40299 -27.92605 -25.38402 -24.94949 -23.87619 -23.16037 -22.15805 -21.65613 -19.88773 -18.92779 -18.72572 -18.07909 -17.40170 -16.82767 -16.45795 -15.97233 -15.89151 -15.72189 -15.34133 -15.12888 -14.84776 -14.26675 -14.01279 -13.82706 -13.55296 -13.47072 -13.26014 -12.89185 -12.64574 -12.49221 -12.35644 -12.30282 -12.02610 -11.75165 -11.66378 -11.58750 -11.25341 -11.09250 -10.97041 -10.73651 -10.65825 -10.60542 -10.33109 -9.65826 -9.29702 -9.13578 -8.88902 -8.73478 -8.60583 -8.40986 -6.07495 -4.08239 0.86425 1.04401 2.07107 2.82323 3.20467 3.23287 3.27761 3.30444 3.34218 3.46008 3.88942 4.17087 4.35069 4.35684 4.54369 4.63696 4.67381 4.82149 5.04560 5.08630 5.19148 5.21530 5.25325 5.33405 5.43663 5.48227 5.54756 5.65556 5.70650 5.88632 5.92294 5.98946 6.07509 6.11058 6.22587 6.31881 6.33948 6.40215 6.48286 6.51706 6.73477 7.11730 7.30497 7.50679 7.75850 7.98472 8.50161 8.96736 9.11766 9.50770 11.05413 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.018703 B = 0.003176 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.704050 B = 8813.059860 C = 9317.984203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.002 3.998 3 H 0.050 0.950 4 C -0.507 4.507 5 H 0.094 0.906 6 C 0.071 3.929 7 N -0.894 5.894 8 Si 0.883 3.117 9 H -0.277 1.277 10 H -0.295 1.295 11 H -0.267 1.267 12 C 0.552 3.448 13 O -0.522 6.522 14 N -0.636 5.636 15 C 0.112 3.888 16 C -0.060 4.060 17 H 0.114 0.886 18 C -0.080 4.080 19 C -0.097 4.097 20 C -0.142 4.142 21 C 0.100 3.900 22 O -0.502 6.502 23 C -0.143 4.143 24 C -0.091 4.091 25 C -0.093 4.093 26 H 0.125 0.875 27 C 0.488 3.512 28 O -0.507 6.507 29 O -0.513 6.513 30 C 0.112 3.888 31 H 0.058 0.942 32 H 0.049 0.951 33 H 0.037 0.963 34 H 0.265 0.735 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.131 0.869 38 H 0.129 0.871 39 H 0.390 0.610 40 H 0.128 0.872 41 H 0.130 0.870 42 H 0.412 0.588 43 H 0.096 0.904 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.400 6.434 -24.486 25.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 H 0.067 0.933 4 C -0.545 4.545 5 H 0.112 0.888 6 C -0.130 4.130 7 N -0.532 5.532 8 Si 0.714 3.286 9 H -0.204 1.204 10 H -0.222 1.222 11 H -0.192 1.192 12 C 0.343 3.657 13 O -0.395 6.395 14 N -0.374 5.374 15 C -0.011 4.011 16 C -0.079 4.079 17 H 0.132 0.868 18 C -0.081 4.081 19 C -0.115 4.115 20 C -0.160 4.160 21 C 0.056 3.944 22 O -0.312 6.312 23 C -0.162 4.162 24 C -0.109 4.109 25 C -0.113 4.113 26 H 0.143 0.857 27 C 0.330 3.670 28 O -0.394 6.394 29 O -0.325 6.325 30 C -0.012 4.012 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.149 0.851 38 H 0.147 0.853 39 H 0.246 0.754 40 H 0.146 0.854 41 H 0.147 0.853 42 H 0.271 0.729 43 H 0.115 0.885 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.024 6.079 -24.207 25.459 hybrid contribution -0.159 0.904 0.251 0.951 sum -5.183 6.983 -23.956 25.485 Atomic orbital electron populations 1.22238 0.97207 1.01726 0.99512 1.19267 0.93341 0.97324 0.92039 0.93272 1.20929 1.32241 1.14207 0.87169 0.88848 1.24972 0.95804 0.96550 0.95714 1.69876 1.45329 1.40147 0.97883 0.86925 0.80752 0.83829 0.77139 1.20394 1.22248 1.19248 1.21113 0.78439 0.84001 0.82103 1.90607 1.37231 1.26359 1.85264 1.49326 1.52974 1.29831 1.05293 1.22316 1.01581 0.94444 0.82743 1.21232 1.02205 0.93905 0.90541 0.86788 1.19695 0.93794 1.00388 0.94180 1.20971 0.95444 0.98585 0.96465 1.21405 1.00182 1.02279 0.92178 1.18510 0.91714 1.00390 0.83806 1.84819 1.86791 1.33090 1.26486 1.21417 0.95208 1.02236 0.97335 1.21019 0.99868 0.98553 0.91495 1.22136 0.97396 0.92113 0.99680 0.85726 1.23084 0.88160 0.82002 0.73739 1.90704 1.17380 1.78687 1.52670 1.84500 1.45992 1.30238 1.71761 1.22349 0.94298 0.88737 0.95817 0.92273 0.93206 0.94394 0.92504 0.90975 0.89359 0.85140 0.85303 0.75427 0.85392 0.85258 0.72857 0.88542 0.89474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 8.42 37.16 0.31 -2.69 16 2 C 0.00 0.04 1.56 -92.92 -0.15 -0.10 16 3 H 0.05 1.14 7.01 -51.93 -0.36 0.77 16 4 C -0.51 -14.69 8.96 -34.44 -0.31 -15.00 16 5 H 0.09 3.09 7.00 -52.48 -0.37 2.72 16 6 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 7 N -0.89 -27.61 13.96 55.43 0.77 -26.83 16 8 Si 0.88 21.11 24.37 -169.99 -4.14 16.97 16 9 H -0.28 -6.36 6.87 56.52 0.39 -5.98 16 10 H -0.30 -7.12 7.11 56.52 0.40 -6.72 16 11 H -0.27 -5.91 6.53 56.52 0.37 -5.54 16 12 C 0.55 12.20 7.26 -10.98 -0.08 12.12 16 13 O -0.52 -13.64 15.73 5.56 0.09 -13.55 16 14 N -0.64 -10.42 3.31 -169.31 -0.56 -10.98 16 15 C 0.11 1.50 6.50 -2.41 -0.02 1.48 16 16 C -0.06 -0.66 2.87 -90.37 -0.26 -0.92 16 17 H 0.11 1.46 6.25 -51.93 -0.32 1.14 16 18 C -0.08 -0.75 4.75 -104.60 -0.50 -1.25 16 19 C -0.10 -0.81 8.12 -39.60 -0.32 -1.13 16 20 C -0.14 -1.16 9.99 -39.43 -0.39 -1.56 16 21 C 0.10 0.86 6.70 -39.22 -0.26 0.60 16 22 O -0.50 -3.84 13.50 -19.42 -0.26 -4.10 16 23 C -0.14 -1.22 9.99 -39.43 -0.39 -1.62 16 24 C -0.09 -0.83 9.67 -39.61 -0.38 -1.21 16 25 C -0.09 -0.99 2.99 -90.38 -0.27 -1.26 16 26 H 0.12 0.99 7.33 -51.93 -0.38 0.61 16 27 C 0.49 6.07 7.54 36.01 0.27 6.34 16 28 O -0.51 -7.81 16.01 -18.75 -0.30 -8.11 16 29 O -0.51 -5.20 13.28 -39.27 -0.52 -5.72 16 30 C 0.11 1.37 4.79 -2.41 -0.01 1.36 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.05 1.04 3.27 -51.93 -0.17 0.87 16 33 H 0.04 0.59 5.34 -51.93 -0.28 0.31 16 34 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 35 H 0.07 0.83 6.87 -51.93 -0.36 0.47 16 36 H 0.09 1.33 7.88 -51.93 -0.41 0.92 16 37 H 0.13 0.92 7.72 -52.49 -0.41 0.51 16 38 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 39 H 0.39 1.14 9.06 45.56 0.41 1.56 16 40 H 0.13 0.91 8.06 -52.48 -0.42 0.48 16 41 H 0.13 1.08 7.97 -52.48 -0.42 0.66 16 42 H 0.41 2.64 9.10 45.56 0.41 3.05 16 43 H 0.10 1.27 6.16 -51.93 -0.32 0.95 16 44 H 0.09 0.82 8.01 -51.93 -0.42 0.40 16 LS Contribution 357.77 15.07 5.39 5.39 Total: -1.00 -37.89 357.77 -6.22 -44.10 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -3.83 Total: 5.69 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -2.85 Total: -2.87 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: 0.21 Total: -37.82 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -1.00 Total: -31.48 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.14 Total: 16.97 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -37.89 -6.22 -44.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604061817.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.563 kcal (2) G-P(sol) polarization free energy of solvation -37.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds