Wall clock time and date at job start Tue Mar 31 2020 18:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47085 * 2 1 4 4 C 1.50697 * 109.47212 * 120.00403 * 2 1 3 5 5 H 1.08003 * 120.00490 * 119.99913 * 4 2 1 6 6 C 1.37878 * 119.99959 * 300.00407 * 4 2 1 7 7 N 1.31514 * 120.00229 * 180.02562 * 6 4 2 8 8 Si 1.86805 * 119.99879 * 359.97438 * 6 4 2 9 9 H 1.48502 * 109.46611 * 90.00419 * 8 6 4 10 10 H 1.48498 * 109.47195 * 210.00137 * 8 6 4 11 11 H 1.48492 * 109.47104 * 330.00656 * 8 6 4 12 12 C 1.50702 * 109.47471 * 240.00186 * 2 1 3 13 13 O 1.21278 * 120.00232 * 240.00540 * 12 2 1 14 14 N 1.34784 * 119.99513 * 59.99982 * 12 2 1 15 15 C 1.48145 * 127.83336 * 179.97438 * 14 12 2 16 16 C 1.54395 * 104.61454 * 219.58574 * 15 14 12 17 17 H 1.09002 * 110.34481 * 95.00280 * 16 15 14 18 18 C 1.50698 * 110.43104 * 217.21839 * 16 15 14 19 19 C 1.38265 * 119.94474 * 56.78747 * 18 16 15 20 20 C 1.38154 * 120.05233 * 179.72757 * 19 18 16 21 21 C 1.38726 * 119.94520 * 0.54397 * 20 19 18 22 22 O 1.35898 * 120.05581 * 179.74508 * 21 20 19 23 23 C 1.38732 * 119.88704 * 359.73276 * 21 20 19 24 24 C 1.38142 * 119.94578 * 359.97438 * 23 21 20 25 25 C 1.54281 * 104.95731 * 336.13228 * 16 15 14 26 26 H 1.09003 * 110.34267 * 241.12661 * 25 16 15 27 27 C 1.50699 * 110.34381 * 118.97869 * 25 16 15 28 28 O 1.20828 * 119.99982 * 359.97438 * 27 25 16 29 29 O 1.34233 * 120.00338 * 179.97438 * 27 25 16 30 30 C 1.48140 * 127.83889 * 359.97438 * 14 12 2 31 31 H 1.09000 * 109.46961 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46998 * 299.99668 * 1 2 3 33 33 H 1.09005 * 109.47059 * 59.99630 * 1 2 3 34 34 H 0.96998 * 120.00507 * 179.97438 * 7 6 4 35 35 H 1.08990 * 110.41068 * 100.80264 * 15 14 12 36 36 H 1.09000 * 110.40585 * 338.36403 * 15 14 12 37 37 H 1.07998 * 119.97351 * 0.02562 * 19 18 16 38 38 H 1.07997 * 120.02113 * 180.27474 * 20 19 18 39 39 H 0.96694 * 114.00289 * 269.98633 * 22 21 20 40 40 H 1.08005 * 120.02813 * 180.02562 * 23 21 20 41 41 H 1.08004 * 119.97052 * 180.02562 * 24 23 21 42 42 H 0.96704 * 116.99673 * 179.97438 * 29 27 25 43 43 H 1.08998 * 110.41105 * 21.63503 * 30 14 12 44 44 H 1.08999 * 110.51120 * 259.24571 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 2.1380 -0.8593 3.5565 8 14 0.6257 1.2796 2.6541 9 1 -0.8022 0.8741 2.6993 10 1 0.9769 1.9951 3.9071 11 1 0.8489 2.1771 1.4924 12 6 2.0324 -0.7104 -1.2305 13 8 2.7296 -1.6965 -1.1192 14 7 1.7068 -0.2498 -2.4546 15 6 2.1013 -0.8066 -3.7695 16 6 2.3918 0.4313 -4.6454 17 1 3.4563 0.6651 -4.6299 18 6 1.9287 0.1952 -6.0599 19 6 0.6097 -0.1372 -6.3079 20 6 0.1815 -0.3486 -7.6043 21 6 1.0786 -0.2381 -8.6566 22 8 0.6609 -0.4506 -9.9322 23 6 2.4028 0.0900 -8.4046 24 6 2.8247 0.3063 -7.1071 25 6 1.5821 1.5749 -3.9998 26 1 0.8482 1.9647 -4.7052 27 6 2.5037 2.6759 -3.5422 28 8 3.6962 2.5733 -3.7076 29 8 1.9999 3.7706 -2.9509 30 6 0.8733 0.9280 -2.7903 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.9039 -0.5278 4.4375 35 1 1.2853 -1.3904 -4.1954 36 1 2.9968 -1.4198 -3.6694 37 1 -0.0874 -0.2270 -5.4880 38 1 -0.8499 -0.6039 -7.7978 39 1 0.7376 -1.3695 -10.2233 40 1 3.1031 0.1770 -9.2222 41 1 3.8554 0.5621 -6.9104 42 1 2.6304 4.4496 -2.6743 43 1 0.8423 1.6233 -1.9515 44 1 -0.1353 0.6170 -3.0627 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604061817.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:19 Heat of formation + Delta-G solvation = -160.349273 kcal Electronic energy + Delta-G solvation = -29127.891604 eV Core-core repulsion = 25009.503331 eV Total energy + Delta-G solvation = -4118.388273 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.11959 -40.71296 -40.48560 -38.76435 -37.26569 -37.10118 -35.87407 -33.84312 -32.81113 -31.92830 -31.32438 -28.87696 -27.14982 -26.39307 -24.84749 -23.92182 -23.44153 -22.56051 -20.77091 -20.35331 -19.31153 -19.02473 -18.87903 -18.22754 -17.70106 -17.37123 -16.86692 -16.64551 -16.42633 -16.20538 -15.88908 -15.78943 -15.21467 -14.87550 -14.61205 -14.50922 -14.30564 -14.22764 -13.95778 -13.71588 -13.48431 -13.26488 -13.15345 -12.99360 -12.84402 -12.59898 -12.54398 -12.48876 -12.17627 -12.06885 -11.97920 -11.62615 -11.45505 -11.32393 -11.23772 -10.79124 -10.53988 -9.91998 -9.77282 -9.41654 -8.28293 -6.37123 0.23155 0.43320 1.13704 1.32294 1.39824 1.50962 1.76197 1.95477 2.04453 2.33859 2.62994 3.04910 3.26038 3.32795 3.46573 3.72695 3.90433 3.97829 4.04835 4.10931 4.27933 4.30818 4.36740 4.41650 4.48292 4.51842 4.60279 4.64079 4.70628 4.77473 4.83245 4.93093 4.96117 5.01014 5.13775 5.26446 5.39842 5.45143 5.50786 5.52263 5.58897 5.66693 5.91019 6.24384 6.51594 6.79463 6.89745 6.93928 7.23053 7.36962 8.89594 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.018703 B = 0.003176 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.704050 B = 8813.059860 C = 9317.984203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.001 3.999 3 H 0.060 0.940 4 C -0.525 4.525 5 H 0.027 0.973 6 C 0.006 3.994 7 N -0.953 5.953 8 Si 0.960 3.040 9 H -0.254 1.254 10 H -0.300 1.300 11 H -0.230 1.230 12 C 0.547 3.453 13 O -0.584 6.584 14 N -0.632 5.632 15 C 0.111 3.889 16 C -0.046 4.046 17 H 0.090 0.910 18 C -0.088 4.088 19 C -0.092 4.092 20 C -0.145 4.145 21 C 0.098 3.902 22 O -0.513 6.513 23 C -0.152 4.152 24 C -0.101 4.101 25 C -0.085 4.085 26 H 0.165 0.835 27 C 0.485 3.515 28 O -0.547 6.547 29 O -0.505 6.505 30 C 0.101 3.899 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.092 0.908 34 H 0.268 0.732 35 H 0.101 0.899 36 H 0.058 0.942 37 H 0.152 0.848 38 H 0.147 0.853 39 H 0.410 0.590 40 H 0.137 0.863 41 H 0.126 0.874 42 H 0.428 0.572 43 H 0.095 0.905 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.204 9.182 -27.114 30.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.021 4.021 3 H 0.077 0.923 4 C -0.564 4.564 5 H 0.045 0.955 6 C -0.190 4.190 7 N -0.593 5.593 8 Si 0.784 3.216 9 H -0.179 1.179 10 H -0.228 1.228 11 H -0.153 1.153 12 C 0.339 3.661 13 O -0.463 6.463 14 N -0.367 5.367 15 C -0.012 4.012 16 C -0.065 4.065 17 H 0.109 0.891 18 C -0.088 4.088 19 C -0.110 4.110 20 C -0.163 4.163 21 C 0.054 3.946 22 O -0.326 6.326 23 C -0.171 4.171 24 C -0.119 4.119 25 C -0.104 4.104 26 H 0.182 0.818 27 C 0.329 3.671 28 O -0.438 6.438 29 O -0.318 6.318 30 C -0.021 4.021 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.110 0.890 34 H 0.077 0.923 35 H 0.119 0.881 36 H 0.077 0.923 37 H 0.170 0.830 38 H 0.164 0.836 39 H 0.269 0.731 40 H 0.154 0.846 41 H 0.144 0.856 42 H 0.289 0.711 43 H 0.113 0.887 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.865 8.868 -26.918 29.695 hybrid contribution 1.128 -0.018 0.943 1.471 sum -7.736 8.850 -25.975 28.511 Atomic orbital electron populations 1.22132 0.93830 1.02029 1.01946 1.19162 0.95921 0.96725 0.90273 0.92275 1.21094 1.31866 1.12932 0.90471 0.95508 1.26070 0.97462 1.00823 0.94663 1.70081 1.47557 1.42855 0.98770 0.85710 0.79032 0.78814 0.78064 1.17930 1.22802 1.15299 1.20842 0.78123 0.83409 0.83773 1.90582 1.40082 1.29104 1.86497 1.49102 1.52302 1.30750 1.04503 1.22520 1.01460 0.95553 0.81636 1.20969 1.01220 0.92978 0.91379 0.89139 1.19517 0.94575 1.01961 0.92784 1.21149 0.94952 0.97626 0.97236 1.21618 1.00939 1.01844 0.91898 1.18670 0.91732 0.99860 0.84376 1.84763 1.86672 1.35059 1.26098 1.21542 0.95777 1.02423 0.97324 1.21090 0.99954 0.98881 0.91970 1.22206 0.97447 0.91148 0.99607 0.81786 1.23503 0.87839 0.82679 0.73088 1.90709 1.19176 1.79581 1.54310 1.84462 1.46309 1.30047 1.71027 1.22829 0.95790 0.87073 0.96423 0.93239 0.93476 0.88963 0.92330 0.88075 0.92297 0.83023 0.83572 0.73100 0.84562 0.85578 0.71060 0.88678 0.84705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.22 8.42 71.98 0.61 -4.61 16 2 C 0.00 0.03 1.56 -12.29 -0.02 0.01 16 3 H 0.06 2.61 7.01 -2.39 -0.02 2.59 16 4 C -0.53 -31.86 8.96 25.60 0.23 -31.63 16 5 H 0.03 1.93 7.00 -2.91 -0.02 1.90 16 6 C 0.01 0.37 5.45 84.65 0.46 0.83 16 7 N -0.95 -61.59 13.96 21.45 0.30 -61.29 16 8 Si 0.96 42.59 24.37 68.60 1.67 44.26 16 9 H -0.25 -10.33 6.87 99.48 0.68 -9.64 16 10 H -0.30 -13.50 7.11 99.48 0.71 -12.80 16 11 H -0.23 -8.76 6.53 99.48 0.65 -8.11 16 12 C 0.55 24.53 7.26 87.66 0.64 25.17 16 13 O -0.58 -32.59 15.73 -3.02 -0.05 -32.64 16 14 N -0.63 -19.59 3.31 -807.97 -2.67 -22.26 16 15 C 0.11 2.81 6.50 86.54 0.56 3.38 16 16 C -0.05 -0.94 2.87 -10.63 -0.03 -0.97 16 17 H 0.09 2.34 6.25 -2.39 -0.01 2.32 16 18 C -0.09 -1.43 4.75 -19.85 -0.09 -1.52 16 19 C -0.09 -1.15 8.12 22.26 0.18 -0.97 16 20 C -0.14 -1.81 9.99 22.37 0.22 -1.59 16 21 C 0.10 1.42 6.70 22.50 0.15 1.57 16 22 O -0.51 -6.43 13.50 -92.40 -1.25 -7.68 16 23 C -0.15 -2.32 9.99 22.37 0.22 -2.10 16 24 C -0.10 -1.70 9.67 22.25 0.22 -1.48 16 25 C -0.08 -1.46 2.99 -10.64 -0.03 -1.49 16 26 H 0.16 1.63 7.33 -2.39 -0.02 1.61 16 27 C 0.49 10.83 7.54 71.24 0.54 11.37 16 28 O -0.55 -16.51 16.01 21.96 0.35 -16.16 16 29 O -0.51 -8.43 13.28 -51.45 -0.68 -9.11 16 30 C 0.10 1.98 4.79 86.53 0.41 2.39 16 31 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.05 1.76 3.27 -2.39 -0.01 1.75 16 33 H 0.09 2.35 5.34 -2.38 -0.01 2.33 16 34 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 35 H 0.10 2.02 6.87 -2.39 -0.02 2.00 16 36 H 0.06 1.85 7.88 -2.39 -0.02 1.83 16 37 H 0.15 1.22 7.72 -2.91 -0.02 1.20 16 38 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 39 H 0.41 1.32 9.06 -74.06 -0.67 0.64 16 40 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 41 H 0.13 2.11 7.97 -2.91 -0.02 2.08 16 42 H 0.43 4.24 9.10 -74.05 -0.67 3.56 16 43 H 0.09 1.98 6.16 -2.39 -0.01 1.96 16 44 H 0.14 1.51 8.01 -2.39 -0.02 1.49 16 Total: -1.00 -91.28 357.77 1.59 -89.69 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -0.35 Total: 16.85 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: 4.27 Total: -1.65 kcal Atomic # 7 Polarization: -81.19 SS G_CDS: -2.37 Total: -83.56 kcal Atomic # 8 Polarization: -63.97 SS G_CDS: -1.63 Total: -65.59 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 1.67 Total: 44.26 kcal Total: -91.28 1.59 -89.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604061817.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.658 kcal (2) G-P(sol) polarization free energy of solvation -91.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds