Wall clock time and date at job start Tue Mar 31 2020 18:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47363 * 2 1 4 4 C 1.53000 * 109.47250 * 239.99409 * 2 1 3 5 5 C 1.50697 * 109.46805 * 65.00438 * 4 2 1 6 6 H 1.08000 * 120.00332 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99866 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99780 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00161 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47099 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47275 * 120.00079 * 9 7 5 12 12 H 1.48505 * 109.47187 * 240.00191 * 9 7 5 13 13 C 1.53008 * 109.46732 * 119.99646 * 2 1 3 14 14 N 1.46899 * 109.47256 * 294.99710 * 13 2 1 15 15 C 1.46895 * 111.00404 * 185.10108 * 14 13 2 16 16 C 1.53002 * 109.23809 * 301.85904 * 15 14 13 17 17 C 1.50696 * 109.47001 * 305.68978 * 16 15 14 18 18 O 1.20833 * 120.00088 * 5.59881 * 17 16 15 19 19 O 1.34225 * 120.00217 * 185.60198 * 17 16 15 20 20 C 1.52588 * 109.24572 * 182.44892 * 15 14 13 21 21 C 1.53031 * 109.98765 * 309.69227 * 20 15 14 22 22 S 1.81679 * 108.99559 * 296.34860 * 21 20 15 23 23 O 1.42097 * 108.66267 * 299.96603 * 22 21 20 24 24 O 1.42103 * 108.74318 * 168.66247 * 22 21 20 25 25 C 1.81663 * 101.30739 * 54.30064 * 22 21 20 26 26 C 1.52586 * 109.24062 * 61.29658 * 15 14 13 27 27 H 1.09001 * 109.46666 * 60.00306 * 1 2 3 28 28 H 1.08996 * 109.47151 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46676 * 300.00739 * 1 2 3 30 30 H 1.08997 * 109.47207 * 305.00303 * 4 2 1 31 31 H 1.09002 * 109.46871 * 185.00130 * 4 2 1 32 32 H 0.97001 * 119.99874 * 179.97438 * 8 7 5 33 33 H 1.08994 * 109.47230 * 55.00191 * 13 2 1 34 34 H 1.09001 * 109.46968 * 175.00020 * 13 2 1 35 35 H 1.00898 * 111.00115 * 309.06178 * 14 13 2 36 36 H 1.08996 * 109.47160 * 65.69366 * 16 15 14 37 37 H 1.08999 * 109.46712 * 185.69141 * 16 15 14 38 38 H 0.96703 * 117.00392 * 179.97438 * 19 17 16 39 39 H 1.09002 * 109.38176 * 69.84526 * 20 15 14 40 40 H 1.08999 * 109.38683 * 189.53040 * 20 15 14 41 41 H 1.08995 * 109.55217 * 176.49850 * 21 20 15 42 42 H 1.08996 * 109.55254 * 56.20180 * 21 20 15 43 43 H 1.09004 * 109.55039 * 185.84472 * 25 22 21 44 44 H 1.09005 * 109.55334 * 65.55442 * 25 22 21 45 45 H 1.09000 * 109.38580 * 170.47239 * 26 15 14 46 46 H 1.09000 * 109.38893 * 290.26377 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 1.6415 0.0569 -2.4765 6 1 1.0808 0.9745 -2.3757 7 6 1.9934 -0.4019 -3.7282 8 7 2.6774 -1.5185 -3.8508 9 14 1.4988 0.5623 -5.2496 10 1 0.7404 1.7728 -4.8436 11 1 2.7167 0.9679 -5.9963 12 1 0.6454 -0.2875 -6.1185 13 6 2.0400 -0.7212 1.2494 14 7 1.6514 0.0375 2.4457 15 6 2.2269 -0.5598 3.6581 16 6 1.7596 -2.0120 3.7751 17 6 0.2546 -2.0616 3.7174 18 8 -0.3750 -1.0547 3.4941 19 8 -0.3867 -3.2243 3.9142 20 6 1.7496 0.2213 4.8789 21 6 1.9812 1.7188 4.6651 22 16 3.7660 2.0268 4.5228 23 8 4.3978 1.6019 5.7225 24 8 3.9647 3.3576 4.0658 25 6 4.2201 0.8802 3.1889 26 6 3.7493 -0.5278 3.5604 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8899 30 1 1.6054 -1.7199 -1.2950 31 1 3.1264 -0.7996 -1.2054 32 1 2.9247 -1.8415 -4.7314 33 1 1.6054 -1.7197 1.2953 34 1 3.1263 -0.7995 1.2058 35 1 1.9154 1.0076 2.3602 36 1 2.1742 -2.5946 2.9525 37 1 2.1008 -2.4281 4.7231 38 1 -1.3525 -3.2063 3.8679 39 1 0.6862 0.0380 5.0326 40 1 2.3028 -0.1084 5.7583 41 1 1.5817 2.2744 5.5134 42 1 1.4819 2.0381 3.7503 43 1 5.3025 0.8808 3.0601 44 1 3.7408 1.1920 2.2609 45 1 4.1795 -0.8114 4.5209 46 1 4.0776 -1.2311 2.7951 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604130366.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:48 Heat of formation + Delta-G solvation = -161.918811 kcal Electronic energy + Delta-G solvation = -28859.005942 eV Core-core repulsion = 24875.993560 eV Total energy + Delta-G solvation = -3983.012382 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.86834 -39.07026 -37.20217 -36.22059 -35.96340 -35.62866 -32.81690 -32.14373 -31.58751 -30.52813 -26.87698 -26.19658 -25.14166 -24.02717 -22.58378 -21.82338 -19.58449 -19.34504 -18.66457 -17.99058 -17.11676 -16.66090 -16.59963 -16.48725 -16.14537 -15.78632 -15.45415 -15.00711 -14.76890 -14.42314 -14.13145 -13.65528 -13.46946 -13.31974 -12.86993 -12.74670 -12.60500 -12.35598 -12.23469 -12.20317 -12.11864 -12.08416 -11.77162 -11.53487 -11.40547 -11.35600 -11.19095 -10.89760 -10.87485 -10.77683 -10.39484 -10.31612 -10.27069 -10.19092 -9.77784 -9.21789 -9.00464 -8.37586 -8.23269 -6.02398 -4.03362 -0.20469 2.34283 2.42675 2.96222 3.29365 3.37366 3.41481 3.41911 3.66767 4.00246 4.15299 4.23365 4.34448 4.37825 4.45197 4.61732 4.80074 4.88933 5.04441 5.13322 5.20929 5.33952 5.37535 5.45623 5.48505 5.52541 5.61561 5.69645 5.73486 5.90338 6.05821 6.33366 6.45394 6.57633 6.64123 6.92726 7.08525 7.13785 7.20848 7.37550 7.62588 7.77425 7.97271 8.00908 8.41334 9.03057 9.60617 11.09101 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.011908 B = 0.003858 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.781001 B = 7255.488492 C = 8743.850463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.084 4.084 3 H 0.053 0.947 4 C 0.029 3.971 5 C -0.512 4.512 6 H 0.057 0.943 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.053 3.947 14 N -0.657 5.657 15 C 0.109 3.891 16 C -0.101 4.101 17 C 0.470 3.530 18 O -0.467 6.467 19 O -0.529 6.529 20 C -0.099 4.099 21 C -0.599 4.599 22 S 2.410 3.590 23 O -0.940 6.940 24 O -0.942 6.942 25 C -0.608 4.608 26 C -0.141 4.141 27 H 0.052 0.948 28 H 0.036 0.964 29 H 0.046 0.954 30 H 0.015 0.985 31 H 0.012 0.988 32 H 0.259 0.741 33 H 0.067 0.933 34 H 0.034 0.966 35 H 0.332 0.668 36 H 0.113 0.887 37 H 0.108 0.892 38 H 0.407 0.593 39 H 0.104 0.896 40 H 0.084 0.916 41 H 0.136 0.864 42 H 0.143 0.857 43 H 0.140 0.860 44 H 0.136 0.864 45 H 0.091 0.909 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.855 -0.955 20.741 20.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.103 4.103 3 H 0.072 0.928 4 C -0.009 4.009 5 C -0.551 4.551 6 H 0.075 0.925 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.075 4.075 14 N -0.290 5.290 15 C 0.016 3.984 16 C -0.139 4.139 17 C 0.310 3.690 18 O -0.351 6.351 19 O -0.342 6.342 20 C -0.138 4.138 21 C -0.729 4.729 22 S 2.592 3.408 23 O -0.937 6.937 24 O -0.939 6.939 25 C -0.737 4.737 26 C -0.181 4.181 27 H 0.071 0.929 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.034 0.966 31 H 0.030 0.970 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.052 0.948 35 H 0.153 0.847 36 H 0.131 0.869 37 H 0.126 0.874 38 H 0.266 0.734 39 H 0.123 0.877 40 H 0.102 0.898 41 H 0.154 0.846 42 H 0.161 0.839 43 H 0.159 0.841 44 H 0.154 0.846 45 H 0.110 0.890 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.599 -0.483 21.101 21.115 hybrid contribution -0.353 0.175 -1.777 1.820 sum -0.952 -0.308 19.325 19.350 Atomic orbital electron populations 1.21568 0.95410 1.00523 1.00356 1.21236 0.96301 0.98800 0.93949 0.92838 1.19111 0.95809 0.95539 0.90436 1.21261 1.34566 1.08305 0.90947 0.92505 1.25009 0.95281 0.95078 0.99117 1.69969 1.39115 1.21277 1.23310 0.86581 0.78272 0.80159 0.83269 1.19730 1.21096 1.21088 1.22340 0.97674 0.98086 0.89381 1.60851 1.61907 1.05447 1.00761 1.20838 0.90910 0.93723 0.92909 1.21376 0.89160 0.97255 1.06067 1.23040 0.91515 0.80696 0.73739 1.90787 1.68033 1.34992 1.41253 1.84516 1.27336 1.37736 1.84601 1.21434 1.06024 0.89619 0.96713 1.30178 1.24477 1.05672 1.12560 1.08277 0.79057 0.76269 0.77198 1.93570 1.73385 1.83420 1.43314 1.93609 1.84718 1.33357 1.82257 1.30260 1.12454 1.11703 1.19284 1.22016 0.96533 0.94734 1.04818 0.92910 0.94457 0.93457 0.96646 0.96956 0.93148 0.91491 0.94773 0.84694 0.86942 0.87389 0.73436 0.87736 0.89751 0.84562 0.83865 0.84143 0.84566 0.89015 0.88410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.30 8.89 37.16 0.33 -1.97 16 2 C -0.08 -1.59 2.43 -90.61 -0.22 -1.81 16 3 H 0.05 1.02 8.12 -51.93 -0.42 0.59 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.01 8.41 -34.44 -0.29 -14.30 16 6 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.45 13.29 55.43 0.74 -25.71 16 9 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 10 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 C 0.05 0.78 3.87 -3.82 -0.01 0.76 16 14 N -0.66 -7.71 3.42 -100.39 -0.34 -8.06 16 15 C 0.11 0.97 0.29 -132.03 -0.04 0.93 16 16 C -0.10 -0.84 4.28 -27.88 -0.12 -0.96 16 17 C 0.47 4.93 7.42 36.00 0.27 5.19 16 18 O -0.47 -6.16 13.95 -18.76 -0.26 -6.42 16 19 O -0.53 -4.69 13.42 -39.25 -0.53 -5.21 16 20 C -0.10 -0.80 4.61 -26.93 -0.12 -0.93 16 21 C -0.60 -4.74 5.96 37.17 0.22 -4.52 16 22 S 2.41 23.06 5.30 -107.50 -0.57 22.48 16 23 O -0.94 -11.25 17.94 -57.82 -1.04 -12.28 16 24 O -0.94 -12.73 18.11 -57.82 -1.05 -13.78 16 25 C -0.61 -5.16 5.85 37.18 0.22 -4.94 16 26 C -0.14 -1.12 4.04 -26.92 -0.11 -1.22 16 27 H 0.05 1.08 6.95 -51.93 -0.36 0.72 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.82 7.75 -51.93 -0.40 0.42 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 33 H 0.07 1.01 6.49 -51.93 -0.34 0.67 16 34 H 0.03 0.48 6.05 -51.93 -0.31 0.16 16 35 H 0.33 3.65 4.59 -39.29 -0.18 3.47 16 36 H 0.11 0.95 6.73 -51.93 -0.35 0.60 16 37 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.41 2.21 9.10 45.56 0.41 2.63 16 39 H 0.10 0.95 6.01 -51.93 -0.31 0.64 16 40 H 0.08 0.53 8.01 -51.93 -0.42 0.11 16 41 H 0.14 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.14 1.15 6.36 -51.93 -0.33 0.82 16 43 H 0.14 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.14 1.22 6.02 -51.92 -0.31 0.91 16 45 H 0.09 0.57 8.01 -51.93 -0.42 0.15 16 46 H 0.10 0.79 6.73 -51.93 -0.35 0.44 16 LS Contribution 363.39 15.07 5.48 5.48 Total: -1.00 -37.11 363.39 -8.82 -45.94 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -6.13 Total: 2.81 kcal Atomic # 6 Polarization: -21.62 SS G_CDS: -0.10 Total: -21.72 kcal Atomic # 7 Polarization: -34.16 SS G_CDS: 0.39 Total: -33.77 kcal Atomic # 8 Polarization: -34.83 SS G_CDS: -2.87 Total: -37.70 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: 23.06 SS G_CDS: -0.57 Total: 22.48 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -37.11 -8.82 -45.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604130366.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.983 kcal (2) G-P(sol) polarization free energy of solvation -37.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds