Wall clock time and date at job start Tue Mar 31 2020 18:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47363 * 2 1 4 4 C 1.53000 * 109.47250 * 239.99409 * 2 1 3 5 5 C 1.50697 * 109.46805 * 65.00438 * 4 2 1 6 6 H 1.08000 * 120.00332 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99866 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99780 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00161 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47099 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47275 * 120.00079 * 9 7 5 12 12 H 1.48505 * 109.47187 * 240.00191 * 9 7 5 13 13 C 1.53008 * 109.46732 * 119.99646 * 2 1 3 14 14 N 1.46899 * 109.47256 * 294.99710 * 13 2 1 15 15 C 1.46895 * 111.00404 * 185.10108 * 14 13 2 16 16 C 1.53002 * 109.23809 * 301.85904 * 15 14 13 17 17 C 1.50696 * 109.47001 * 305.68978 * 16 15 14 18 18 O 1.20833 * 120.00088 * 5.59881 * 17 16 15 19 19 O 1.34225 * 120.00217 * 185.60198 * 17 16 15 20 20 C 1.52588 * 109.24572 * 182.44892 * 15 14 13 21 21 C 1.53031 * 109.98765 * 309.69227 * 20 15 14 22 22 S 1.81679 * 108.99559 * 296.34860 * 21 20 15 23 23 O 1.42097 * 108.66267 * 299.96603 * 22 21 20 24 24 O 1.42103 * 108.74318 * 168.66247 * 22 21 20 25 25 C 1.81663 * 101.30739 * 54.30064 * 22 21 20 26 26 C 1.52586 * 109.24062 * 61.29658 * 15 14 13 27 27 H 1.09001 * 109.46666 * 60.00306 * 1 2 3 28 28 H 1.08996 * 109.47151 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46676 * 300.00739 * 1 2 3 30 30 H 1.08997 * 109.47207 * 305.00303 * 4 2 1 31 31 H 1.09002 * 109.46871 * 185.00130 * 4 2 1 32 32 H 0.97001 * 119.99874 * 179.97438 * 8 7 5 33 33 H 1.08994 * 109.47230 * 55.00191 * 13 2 1 34 34 H 1.09001 * 109.46968 * 175.00020 * 13 2 1 35 35 H 1.00898 * 111.00115 * 309.06178 * 14 13 2 36 36 H 1.08996 * 109.47160 * 65.69366 * 16 15 14 37 37 H 1.08999 * 109.46712 * 185.69141 * 16 15 14 38 38 H 0.96703 * 117.00392 * 179.97438 * 19 17 16 39 39 H 1.09002 * 109.38176 * 69.84526 * 20 15 14 40 40 H 1.08999 * 109.38683 * 189.53040 * 20 15 14 41 41 H 1.08995 * 109.55217 * 176.49850 * 21 20 15 42 42 H 1.08996 * 109.55254 * 56.20180 * 21 20 15 43 43 H 1.09004 * 109.55039 * 185.84472 * 25 22 21 44 44 H 1.09005 * 109.55334 * 65.55442 * 25 22 21 45 45 H 1.09000 * 109.38580 * 170.47239 * 26 15 14 46 46 H 1.09000 * 109.38893 * 290.26377 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 1.6415 0.0569 -2.4765 6 1 1.0808 0.9745 -2.3757 7 6 1.9934 -0.4019 -3.7282 8 7 2.6774 -1.5185 -3.8508 9 14 1.4988 0.5623 -5.2496 10 1 0.7404 1.7728 -4.8436 11 1 2.7167 0.9679 -5.9963 12 1 0.6454 -0.2875 -6.1185 13 6 2.0400 -0.7212 1.2494 14 7 1.6514 0.0375 2.4457 15 6 2.2269 -0.5598 3.6581 16 6 1.7596 -2.0120 3.7751 17 6 0.2546 -2.0616 3.7174 18 8 -0.3750 -1.0547 3.4941 19 8 -0.3867 -3.2243 3.9142 20 6 1.7496 0.2213 4.8789 21 6 1.9812 1.7188 4.6651 22 16 3.7660 2.0268 4.5228 23 8 4.3978 1.6019 5.7225 24 8 3.9647 3.3576 4.0658 25 6 4.2201 0.8802 3.1889 26 6 3.7493 -0.5278 3.5604 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8899 30 1 1.6054 -1.7199 -1.2950 31 1 3.1264 -0.7996 -1.2054 32 1 2.9247 -1.8415 -4.7314 33 1 1.6054 -1.7197 1.2953 34 1 3.1263 -0.7995 1.2058 35 1 1.9154 1.0076 2.3602 36 1 2.1742 -2.5946 2.9525 37 1 2.1008 -2.4281 4.7231 38 1 -1.3525 -3.2063 3.8679 39 1 0.6862 0.0380 5.0326 40 1 2.3028 -0.1084 5.7583 41 1 1.5817 2.2744 5.5134 42 1 1.4819 2.0381 3.7503 43 1 5.3025 0.8808 3.0601 44 1 3.7408 1.1920 2.2609 45 1 4.1795 -0.8114 4.5209 46 1 4.0776 -1.2311 2.7951 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604130366.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:47 Heat of formation + Delta-G solvation = -190.305010 kcal Electronic energy + Delta-G solvation = -28860.236860 eV Core-core repulsion = 24875.993560 eV Total energy + Delta-G solvation = -3984.243300 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.64115 -39.86515 -38.09211 -37.21118 -37.08800 -36.65159 -34.60731 -32.94689 -32.49949 -31.57434 -28.74472 -27.14365 -26.34243 -24.88335 -24.17511 -22.53885 -20.86167 -20.35152 -19.45755 -18.74993 -18.47617 -17.89625 -17.43742 -17.35126 -17.05572 -16.58790 -16.51321 -16.31755 -15.98514 -15.54870 -15.15714 -14.68139 -14.42157 -14.40164 -14.09358 -13.85647 -13.63050 -13.41356 -13.27840 -13.22267 -13.09595 -13.03505 -12.81085 -12.75470 -12.71854 -12.51842 -12.38557 -12.20133 -12.17461 -11.96045 -11.85659 -11.59073 -11.47227 -11.17860 -11.05365 -10.91498 -10.87150 -10.53303 -9.16581 -8.18085 -6.25805 -0.94618 1.37970 1.39662 1.51494 1.58257 1.71901 2.31785 2.41333 2.69630 2.94278 3.15205 3.16281 3.46525 3.56928 3.67165 3.72802 3.99451 4.09699 4.18125 4.25384 4.36095 4.45100 4.53306 4.57593 4.61915 4.74189 4.85475 4.87300 4.91260 4.94224 5.03166 5.04907 5.11377 5.26203 5.32186 5.48682 5.52242 5.58168 5.82718 5.90274 5.93121 6.09706 6.33252 6.42627 6.90499 7.31185 7.42431 8.93748 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.011908 B = 0.003858 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.781001 B = 7255.488492 C = 8743.850463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.078 4.078 3 H 0.054 0.946 4 C 0.035 3.965 5 C -0.527 4.527 6 H 0.057 0.943 7 C 0.001 3.999 8 N -0.933 5.933 9 Si 0.954 3.046 10 H -0.265 1.265 11 H -0.280 1.280 12 H -0.281 1.281 13 C 0.069 3.931 14 N -0.662 5.662 15 C 0.107 3.893 16 C -0.104 4.104 17 C 0.469 3.531 18 O -0.500 6.500 19 O -0.529 6.529 20 C -0.099 4.099 21 C -0.589 4.589 22 S 2.422 3.578 23 O -0.964 6.964 24 O -0.988 6.988 25 C -0.605 4.605 26 C -0.141 4.141 27 H 0.030 0.970 28 H 0.028 0.972 29 H 0.065 0.935 30 H -0.011 1.011 31 H -0.008 1.008 32 H 0.261 0.739 33 H 0.062 0.938 34 H 0.041 0.959 35 H 0.336 0.664 36 H 0.113 0.887 37 H 0.143 0.857 38 H 0.420 0.580 39 H 0.098 0.902 40 H 0.109 0.891 41 H 0.156 0.844 42 H 0.143 0.857 43 H 0.154 0.846 44 H 0.131 0.869 45 H 0.116 0.884 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.048 -1.040 21.996 22.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.097 4.097 3 H 0.072 0.928 4 C -0.002 4.002 5 C -0.566 4.566 6 H 0.075 0.925 7 C -0.196 4.196 8 N -0.574 5.574 9 Si 0.780 3.220 10 H -0.189 1.189 11 H -0.205 1.205 12 H -0.207 1.207 13 C -0.060 4.060 14 N -0.295 5.295 15 C 0.015 3.985 16 C -0.142 4.142 17 C 0.311 3.689 18 O -0.387 6.387 19 O -0.344 6.344 20 C -0.137 4.137 21 C -0.721 4.721 22 S 2.608 3.392 23 O -0.961 6.961 24 O -0.985 6.985 25 C -0.735 4.735 26 C -0.181 4.181 27 H 0.049 0.951 28 H 0.047 0.953 29 H 0.083 0.917 30 H 0.007 0.993 31 H 0.010 0.990 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.059 0.941 35 H 0.157 0.843 36 H 0.131 0.869 37 H 0.160 0.840 38 H 0.281 0.719 39 H 0.117 0.883 40 H 0.127 0.873 41 H 0.174 0.826 42 H 0.161 0.839 43 H 0.172 0.828 44 H 0.149 0.851 45 H 0.134 0.866 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.788 -0.560 22.384 22.405 hybrid contribution -0.348 0.128 -2.140 2.172 sum -1.136 -0.432 20.244 20.280 Atomic orbital electron populations 1.21431 0.95254 0.99821 1.00071 1.21061 0.96246 0.98581 0.93780 0.92770 1.18984 0.94331 0.94474 0.92455 1.21676 1.34151 1.08463 0.92273 0.92498 1.25855 0.95343 0.96044 1.02368 1.70085 1.40335 1.22831 1.24118 0.85553 0.78070 0.78943 0.79427 1.18896 1.20539 1.20659 1.21991 0.97784 0.97467 0.88742 1.60760 1.62580 1.05539 1.00605 1.20963 0.91543 0.94206 0.91755 1.21519 0.87822 0.96893 1.07954 1.23445 0.92320 0.80428 0.72710 1.90774 1.68889 1.36047 1.42957 1.84493 1.28667 1.37077 1.84131 1.21488 1.06015 0.89180 0.97056 1.30090 1.22203 1.06258 1.13529 1.07745 0.79526 0.75281 0.76626 1.93531 1.74536 1.83531 1.44532 1.93550 1.85810 1.36288 1.82867 1.30218 1.13494 1.11640 1.18183 1.22069 0.95675 0.94114 1.06249 0.95056 0.95322 0.91656 0.99302 0.98965 0.93006 0.91919 0.94078 0.84275 0.86936 0.83950 0.71912 0.88314 0.87302 0.82637 0.83901 0.82822 0.85080 0.86565 0.88272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.10 8.89 71.98 0.64 -3.46 16 2 C -0.08 -2.95 2.43 -10.79 -0.03 -2.98 16 3 H 0.05 2.04 8.12 -2.38 -0.02 2.02 16 4 C 0.04 1.76 4.45 29.85 0.13 1.89 16 5 C -0.53 -29.24 8.41 25.60 0.22 -29.03 16 6 H 0.06 3.09 7.06 -2.91 -0.02 3.06 16 7 C 0.00 0.07 5.46 84.65 0.46 0.54 16 8 N -0.93 -55.85 13.29 21.45 0.28 -55.57 16 9 Si 0.95 44.26 29.54 68.60 2.03 46.29 16 10 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 13 C 0.07 1.95 3.87 86.31 0.33 2.29 16 14 N -0.66 -14.45 3.42 -471.54 -1.61 -16.07 16 15 C 0.11 1.64 0.29 3.25 0.00 1.64 16 16 C -0.10 -1.45 4.28 29.85 0.13 -1.33 16 17 C 0.47 8.91 7.42 71.23 0.53 9.44 16 18 O -0.50 -12.44 13.95 21.94 0.31 -12.13 16 19 O -0.53 -8.38 13.42 -51.37 -0.69 -9.06 16 20 C -0.10 -1.30 4.61 30.47 0.14 -1.16 16 21 C -0.59 -8.06 5.96 71.99 0.43 -7.63 16 22 S 2.42 43.09 5.30 -56.49 -0.30 42.79 16 23 O -0.96 -21.44 17.94 -127.38 -2.29 -23.72 16 24 O -0.99 -26.48 18.11 -127.38 -2.31 -28.79 16 25 C -0.60 -9.18 5.85 72.00 0.42 -8.76 16 26 C -0.14 -1.84 4.04 30.47 0.12 -1.72 16 27 H 0.03 1.28 6.95 -2.39 -0.02 1.26 16 28 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.06 2.22 7.75 -2.39 -0.02 2.20 16 30 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 31 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 32 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 33 H 0.06 1.84 6.49 -2.39 -0.02 1.83 16 34 H 0.04 1.11 6.05 -2.39 -0.01 1.09 16 35 H 0.34 6.88 4.59 -89.70 -0.41 6.46 16 36 H 0.11 1.62 6.73 -2.39 -0.02 1.61 16 37 H 0.14 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.42 3.94 9.10 -74.06 -0.67 3.26 16 39 H 0.10 1.54 6.01 -2.39 -0.01 1.52 16 40 H 0.11 0.94 8.01 -2.39 -0.02 0.92 16 41 H 0.16 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.14 2.05 6.36 -2.39 -0.02 2.03 16 43 H 0.15 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.13 2.19 6.02 -2.39 -0.01 2.17 16 45 H 0.12 1.00 8.01 -2.39 -0.02 0.98 16 46 H 0.10 1.34 6.73 -2.39 -0.02 1.32 16 Total: -1.00 -80.42 363.39 -1.12 -81.54 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -0.07 Total: 15.00 kcal Atomic # 6 Polarization: -43.81 SS G_CDS: 3.53 Total: -40.28 kcal Atomic # 7 Polarization: -70.31 SS G_CDS: -1.33 Total: -71.63 kcal Atomic # 8 Polarization: -68.73 SS G_CDS: -4.98 Total: -73.71 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 16 Polarization: 43.09 SS G_CDS: -0.30 Total: 42.79 kcal Total: -80.42 -1.12 -81.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604130366.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.762 kcal (2) G-P(sol) polarization free energy of solvation -80.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds