Wall clock time and date at job start Tue Mar 31 2020 17:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 110.00029 * 2 1 4 4 C 1.54326 * 109.88127 * 238.91061 * 2 1 3 5 5 H 1.09001 * 110.72513 * 144.23660 * 4 2 1 6 6 C 1.50694 * 110.72143 * 21.13635 * 4 2 1 7 7 O 1.20837 * 120.00017 * 265.02854 * 6 4 2 8 8 O 1.34222 * 120.00338 * 85.30260 * 6 4 2 9 9 C 1.55160 * 102.93957 * 262.77294 * 4 2 1 10 10 C 1.54907 * 101.58262 * 324.49818 * 9 4 2 11 11 N 1.47023 * 109.88708 * 121.10069 * 2 1 3 12 12 C 1.34772 * 125.64663 * 300.51301 * 11 2 1 13 13 O 1.21290 * 119.99925 * 359.97438 * 12 11 2 14 14 C 1.50696 * 120.00273 * 179.97438 * 12 11 2 15 15 C 1.50701 * 109.47146 * 179.97438 * 14 12 11 16 16 C 1.38320 * 119.96361 * 269.71932 * 15 14 12 17 17 C 1.38286 * 120.13772 * 179.76791 * 16 15 14 18 18 C 1.38127 * 120.06469 * 0.51529 * 17 16 15 19 19 C 1.38851 * 119.93073 * 359.74145 * 18 17 16 20 20 O 1.35756 * 120.06655 * 179.97438 * 19 18 17 21 21 C 1.34829 * 116.99912 * 5.64331 * 20 19 18 22 22 H 1.08001 * 120.00083 * 354.93681 * 21 20 19 23 23 C 1.38658 * 120.00090 * 174.93276 * 21 20 19 24 24 N 1.31561 * 119.99549 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00212 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47034 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.46790 * 120.00246 * 25 23 21 28 28 H 1.48498 * 109.47149 * 240.00231 * 25 23 21 29 29 C 1.38082 * 119.96531 * 90.00468 * 15 14 12 30 30 H 1.08996 * 109.47322 * 185.73820 * 1 2 3 31 31 H 1.09002 * 109.47383 * 305.73178 * 1 2 3 32 32 H 1.09000 * 109.47694 * 65.73247 * 1 2 3 33 33 H 0.96702 * 117.00423 * 179.72650 * 8 6 4 34 34 H 1.09003 * 111.00438 * 82.57189 * 9 4 2 35 35 H 1.09003 * 111.00260 * 206.42175 * 9 4 2 36 36 H 1.08999 * 110.36508 * 278.17175 * 10 9 4 37 37 H 1.08995 * 110.36813 * 155.85152 * 10 9 4 38 38 H 1.09005 * 109.47166 * 300.00048 * 14 12 11 39 39 H 1.09002 * 109.47097 * 59.99493 * 14 12 11 40 40 H 1.07999 * 119.93332 * 0.02562 * 16 15 14 41 41 H 1.07996 * 119.96520 * 180.25426 * 17 16 15 42 42 H 1.07997 * 120.02930 * 179.72502 * 18 17 16 43 43 H 0.97007 * 119.99424 * 179.97438 * 24 23 21 44 44 H 1.07998 * 120.03387 * 359.97438 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0547 -0.7494 -1.2428 5 1 2.9639 -0.2812 -1.6202 6 6 0.9998 -0.8039 -2.3175 7 8 0.2803 -1.7704 -2.4094 8 8 0.8629 0.2185 -3.1762 9 6 2.3518 -2.1694 -0.6926 10 6 2.8568 -1.8498 0.7366 11 7 2.0301 -0.7141 1.1838 12 6 1.7743 -0.3855 2.4656 13 8 1.0770 0.5743 2.7180 14 6 2.3547 -1.2104 3.5852 15 6 1.9214 -0.6358 4.9093 16 6 2.6971 0.3251 5.5325 17 6 2.3005 0.8583 6.7452 18 6 1.1332 0.4248 7.3431 19 6 0.3552 -0.5435 6.7226 20 8 -0.7923 -0.9719 7.3080 21 6 -1.1809 -0.3357 8.4314 22 1 -0.5463 0.4194 8.8714 23 6 -2.3952 -0.6507 9.0219 24 7 -3.1685 -1.5701 8.4856 25 14 -2.9333 0.2302 10.5788 26 1 -1.8930 1.2127 10.9762 27 1 -4.2138 0.9396 10.3287 28 1 -3.1210 -0.7608 11.6686 29 6 0.7535 -1.0733 5.5020 30 1 -0.3634 -1.0225 0.1027 31 1 -0.3634 0.6001 0.8342 32 1 -0.3634 0.4224 -0.9368 33 1 0.1751 0.1363 -3.8509 34 1 1.4451 -2.7736 -0.6606 35 1 3.1269 -2.6617 -1.2799 36 1 3.9091 -1.5667 0.7126 37 1 2.7088 -2.7081 1.3920 38 1 2.0003 -2.2377 3.5011 39 1 3.4428 -1.1951 3.5215 40 1 3.6123 0.6626 5.0690 41 1 2.9062 1.6113 7.2273 42 1 0.8263 0.8383 8.2923 43 1 -4.0179 -1.7908 8.8989 44 1 0.1505 -1.8266 5.0169 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604625688.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:37 Heat of formation + Delta-G solvation = -123.759823 kcal Electronic energy + Delta-G solvation = -28133.940129 eV Core-core repulsion = 24017.138494 eV Total energy + Delta-G solvation = -4116.801635 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.31650 -39.93714 -38.90914 -37.63383 -36.48630 -36.27953 -32.89434 -32.24337 -31.68464 -31.42157 -29.15062 -27.40517 -26.73452 -25.21919 -23.85394 -23.29476 -21.61508 -21.05489 -20.21121 -19.28849 -18.37132 -17.57803 -17.31588 -17.15306 -16.88927 -16.26498 -15.78287 -15.43465 -15.04860 -14.68762 -14.35524 -14.15192 -13.91917 -13.72789 -13.52179 -13.35724 -13.25020 -12.89843 -12.65385 -12.52673 -12.45197 -12.32019 -12.00999 -11.86674 -11.77802 -11.50755 -11.29575 -11.26347 -11.22791 -10.87157 -10.80945 -10.71428 -10.56512 -10.38543 -9.70494 -9.27916 -8.84140 -8.78721 -8.01688 -7.16309 -6.38905 -3.97753 1.74160 2.10999 2.42822 2.48596 2.72866 2.96912 3.16134 3.17960 3.23183 3.84252 3.98926 4.01563 4.47567 4.55176 4.64307 4.82796 4.85442 4.87997 5.00939 5.07467 5.18331 5.19305 5.20974 5.25836 5.36455 5.43049 5.52016 5.67893 5.70760 5.78849 5.79775 5.97571 6.01437 6.10979 6.21989 6.24470 6.39187 6.70985 6.96933 7.12945 7.31604 7.36324 7.42376 7.47546 7.49774 7.88068 8.06356 8.24380 9.07048 9.78171 10.79527 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.018427 B = 0.002409 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.132453 B =11618.314596 C =12408.216795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.154 3.846 3 H 0.088 0.912 4 C -0.097 4.097 5 H 0.119 0.881 6 C 0.496 3.504 7 O -0.507 6.507 8 O -0.516 6.516 9 C -0.121 4.121 10 C 0.099 3.901 11 N -0.625 5.625 12 C 0.533 3.467 13 O -0.510 6.510 14 C -0.088 4.088 15 C -0.034 4.034 16 C -0.196 4.196 17 C -0.075 4.075 18 C -0.230 4.230 19 C 0.155 3.845 20 O -0.180 6.180 21 C -0.390 4.390 22 H 0.092 0.908 23 C 0.038 3.962 24 N -0.864 5.864 25 Si 0.940 3.060 26 H -0.267 1.267 27 H -0.276 1.276 28 H -0.276 1.276 29 C -0.173 4.173 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.059 0.941 33 H 0.412 0.588 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.102 0.898 41 H 0.107 0.893 42 H 0.126 0.874 43 H 0.268 0.732 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.390 0.293 -20.802 25.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.050 3.950 3 H 0.106 0.894 4 C -0.116 4.116 5 H 0.137 0.863 6 C 0.337 3.663 7 O -0.394 6.394 8 O -0.328 6.328 9 C -0.158 4.158 10 C -0.024 4.024 11 N -0.362 5.362 12 C 0.322 3.678 13 O -0.383 6.383 14 C -0.127 4.127 15 C -0.035 4.035 16 C -0.215 4.215 17 C -0.093 4.093 18 C -0.250 4.250 19 C 0.101 3.899 20 O -0.084 6.084 21 C -0.466 4.466 22 H 0.109 0.891 23 C -0.166 4.166 24 N -0.500 5.500 25 Si 0.765 3.235 26 H -0.191 1.191 27 H -0.202 1.202 28 H -0.202 1.202 29 C -0.193 4.193 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.078 0.922 33 H 0.271 0.729 34 H 0.115 0.885 35 H 0.111 0.889 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.120 0.880 41 H 0.125 0.875 42 H 0.144 0.856 43 H 0.078 0.922 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 13.694 0.335 -20.271 24.465 hybrid contribution -0.718 0.439 0.198 0.865 sum 12.976 0.774 -20.073 23.914 Atomic orbital electron populations 1.22320 0.94188 1.03629 1.03065 1.21248 0.95178 0.95931 0.82604 0.89379 1.22159 0.97312 1.00136 0.92028 0.86289 1.22854 0.83224 0.79515 0.80661 1.90751 1.43924 1.33677 1.71094 1.84544 1.58465 1.45968 1.43792 1.22873 1.03702 0.94135 0.95134 1.22373 0.95134 0.89810 0.95035 1.48632 1.52052 1.30762 1.04785 1.20502 0.80551 0.85309 0.81417 1.90767 1.36841 1.28159 1.82582 1.20573 1.01720 0.99620 0.90812 1.18656 0.94706 0.96940 0.93189 1.20340 1.01374 1.01916 0.97864 1.20678 0.95625 0.98037 0.94959 1.21178 0.97627 1.03254 1.02919 1.19267 0.87469 0.91719 0.91414 1.83977 1.33203 1.52922 1.38295 1.21364 1.03957 1.20717 1.00568 0.89079 1.25279 0.94917 0.96935 0.99461 1.70058 1.11187 1.29493 1.39231 0.85655 0.78968 0.78870 0.79967 1.19126 1.20190 1.20196 1.19940 0.98281 1.05549 0.95482 0.91606 0.89780 0.92245 0.72910 0.88478 0.88899 0.90664 0.89471 0.88264 0.88365 0.87956 0.87485 0.85622 0.92172 0.86869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 8.16 37.15 0.30 -1.79 16 2 C 0.15 1.55 3.43 -66.95 -0.23 1.32 16 3 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 4 C -0.10 -0.68 3.38 -89.94 -0.30 -0.99 16 5 H 0.12 0.56 8.14 -51.93 -0.42 0.14 16 6 C 0.50 4.14 5.23 36.00 0.19 4.33 16 7 O -0.51 -5.73 16.32 -18.76 -0.31 -6.04 16 8 O -0.52 -3.22 13.30 -39.24 -0.52 -3.74 16 9 C -0.12 -0.76 6.35 -24.58 -0.16 -0.92 16 10 C 0.10 0.67 6.69 -2.53 -0.02 0.65 16 11 N -0.62 -6.77 3.08 -163.03 -0.50 -7.27 16 12 C 0.53 7.84 7.62 -10.99 -0.08 7.76 16 13 O -0.51 -9.94 15.02 5.55 0.08 -9.86 16 14 C -0.09 -1.17 4.84 -29.04 -0.14 -1.31 16 15 C -0.03 -0.63 4.37 -104.65 -0.46 -1.09 16 16 C -0.20 -3.55 9.70 -39.53 -0.38 -3.94 16 17 C -0.07 -1.45 10.04 -39.60 -0.40 -1.85 16 18 C -0.23 -5.26 9.17 -39.40 -0.36 -5.62 16 19 C 0.15 3.91 6.65 -39.11 -0.26 3.65 16 20 O -0.18 -5.33 9.76 0.03 0.00 -5.33 16 21 C -0.39 -11.24 9.49 30.89 0.29 -10.94 16 22 H 0.09 2.44 5.21 -52.49 -0.27 2.17 16 23 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 24 N -0.86 -26.00 13.67 55.48 0.76 -25.25 16 25 Si 0.94 21.11 29.55 -169.99 -5.02 16.08 16 26 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 27 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 28 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 29 C -0.17 -3.84 9.65 -39.39 -0.38 -4.22 16 30 H 0.06 0.86 8.10 -51.93 -0.42 0.44 16 31 H 0.08 1.25 6.93 -51.93 -0.36 0.89 16 32 H 0.06 0.63 6.66 -51.93 -0.35 0.28 16 33 H 0.41 0.98 9.10 45.56 0.41 1.39 16 34 H 0.10 0.80 7.22 -51.93 -0.37 0.43 16 35 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.09 0.52 7.47 -51.93 -0.39 0.13 16 38 H 0.10 1.15 7.79 -51.93 -0.40 0.74 16 39 H 0.10 1.00 8.08 -51.93 -0.42 0.58 16 40 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 41 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 42 H 0.13 2.86 5.64 -52.49 -0.30 2.56 16 43 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.11 2.45 8.06 -52.49 -0.42 2.03 16 LS Contribution 369.54 15.07 5.57 5.57 Total: -1.00 -37.48 369.54 -7.39 -44.86 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -4.96 Total: 4.95 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: -2.48 Total: -13.98 kcal Atomic # 7 Polarization: -32.78 SS G_CDS: 0.26 Total: -32.52 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -0.74 Total: -24.96 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -37.48 -7.39 -44.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604625688.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.897 kcal (2) G-P(sol) polarization free energy of solvation -37.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds