Wall clock time and date at job start Tue Mar 31 2020 17:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 110.00029 * 2 1 4 4 C 1.54326 * 109.88127 * 238.91061 * 2 1 3 5 5 H 1.09001 * 110.72513 * 144.23660 * 4 2 1 6 6 C 1.50694 * 110.72143 * 21.13635 * 4 2 1 7 7 O 1.20837 * 120.00017 * 265.02854 * 6 4 2 8 8 O 1.34222 * 120.00338 * 85.30260 * 6 4 2 9 9 C 1.55160 * 102.93957 * 262.77294 * 4 2 1 10 10 C 1.54907 * 101.58262 * 324.49818 * 9 4 2 11 11 N 1.47023 * 109.88708 * 121.10069 * 2 1 3 12 12 C 1.34772 * 125.64663 * 300.51301 * 11 2 1 13 13 O 1.21290 * 119.99925 * 359.97438 * 12 11 2 14 14 C 1.50696 * 120.00273 * 179.97438 * 12 11 2 15 15 C 1.50701 * 109.47146 * 179.97438 * 14 12 11 16 16 C 1.38320 * 119.96361 * 269.71932 * 15 14 12 17 17 C 1.38286 * 120.13772 * 179.76791 * 16 15 14 18 18 C 1.38127 * 120.06469 * 0.51529 * 17 16 15 19 19 C 1.38851 * 119.93073 * 359.74145 * 18 17 16 20 20 O 1.35756 * 120.06655 * 179.97438 * 19 18 17 21 21 C 1.34829 * 116.99912 * 5.64331 * 20 19 18 22 22 H 1.08001 * 120.00083 * 354.93681 * 21 20 19 23 23 C 1.38658 * 120.00090 * 174.93276 * 21 20 19 24 24 N 1.31561 * 119.99549 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00212 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47034 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.46790 * 120.00246 * 25 23 21 28 28 H 1.48498 * 109.47149 * 240.00231 * 25 23 21 29 29 C 1.38082 * 119.96531 * 90.00468 * 15 14 12 30 30 H 1.08996 * 109.47322 * 185.73820 * 1 2 3 31 31 H 1.09002 * 109.47383 * 305.73178 * 1 2 3 32 32 H 1.09000 * 109.47694 * 65.73247 * 1 2 3 33 33 H 0.96702 * 117.00423 * 179.72650 * 8 6 4 34 34 H 1.09003 * 111.00438 * 82.57189 * 9 4 2 35 35 H 1.09003 * 111.00260 * 206.42175 * 9 4 2 36 36 H 1.08999 * 110.36508 * 278.17175 * 10 9 4 37 37 H 1.08995 * 110.36813 * 155.85152 * 10 9 4 38 38 H 1.09005 * 109.47166 * 300.00048 * 14 12 11 39 39 H 1.09002 * 109.47097 * 59.99493 * 14 12 11 40 40 H 1.07999 * 119.93332 * 0.02562 * 16 15 14 41 41 H 1.07996 * 119.96520 * 180.25426 * 17 16 15 42 42 H 1.07997 * 120.02930 * 179.72502 * 18 17 16 43 43 H 0.97007 * 119.99424 * 179.97438 * 24 23 21 44 44 H 1.07998 * 120.03387 * 359.97438 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0547 -0.7494 -1.2428 5 1 2.9639 -0.2812 -1.6202 6 6 0.9998 -0.8039 -2.3175 7 8 0.2803 -1.7704 -2.4094 8 8 0.8629 0.2185 -3.1762 9 6 2.3518 -2.1694 -0.6926 10 6 2.8568 -1.8498 0.7366 11 7 2.0301 -0.7141 1.1838 12 6 1.7743 -0.3855 2.4656 13 8 1.0770 0.5743 2.7180 14 6 2.3547 -1.2104 3.5852 15 6 1.9214 -0.6358 4.9093 16 6 2.6971 0.3251 5.5325 17 6 2.3005 0.8583 6.7452 18 6 1.1332 0.4248 7.3431 19 6 0.3552 -0.5435 6.7226 20 8 -0.7923 -0.9719 7.3080 21 6 -1.1809 -0.3357 8.4314 22 1 -0.5463 0.4194 8.8714 23 6 -2.3952 -0.6507 9.0219 24 7 -3.1685 -1.5701 8.4856 25 14 -2.9333 0.2302 10.5788 26 1 -1.8930 1.2127 10.9762 27 1 -4.2138 0.9396 10.3287 28 1 -3.1210 -0.7608 11.6686 29 6 0.7535 -1.0733 5.5020 30 1 -0.3634 -1.0225 0.1027 31 1 -0.3634 0.6001 0.8342 32 1 -0.3634 0.4224 -0.9368 33 1 0.1751 0.1363 -3.8509 34 1 1.4451 -2.7736 -0.6606 35 1 3.1269 -2.6617 -1.2799 36 1 3.9091 -1.5667 0.7126 37 1 2.7088 -2.7081 1.3920 38 1 2.0003 -2.2377 3.5011 39 1 3.4428 -1.1951 3.5215 40 1 3.6123 0.6626 5.0690 41 1 2.9062 1.6113 7.2273 42 1 0.8263 0.8383 8.2923 43 1 -4.0179 -1.7908 8.8989 44 1 0.1505 -1.8266 5.0169 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604625688.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:36 Heat of formation + Delta-G solvation = -150.547893 kcal Electronic energy + Delta-G solvation = -28135.101747 eV Core-core repulsion = 24017.138494 eV Total energy + Delta-G solvation = -4117.963253 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.04343 -41.04161 -40.46011 -38.74576 -37.94532 -37.07881 -34.36729 -33.91988 -32.82875 -32.25358 -30.86642 -28.63942 -27.67572 -27.23517 -24.77055 -23.96289 -23.24871 -22.57649 -21.00450 -20.27542 -19.43010 -19.02664 -18.71681 -18.21632 -17.80016 -17.06731 -16.86962 -16.67288 -16.38586 -16.20633 -16.07566 -15.49539 -15.27994 -14.93902 -14.71227 -14.38985 -14.33193 -14.04417 -13.94427 -13.71874 -13.58367 -13.41895 -13.20353 -12.97977 -12.82636 -12.65163 -12.52468 -12.48920 -12.33941 -12.22288 -12.08758 -12.03650 -11.83339 -11.57651 -11.20748 -10.91614 -10.79571 -9.72909 -9.63430 -8.97516 -8.47900 -6.16348 0.51135 0.76094 1.09491 1.32841 1.42007 1.51948 1.63807 1.77629 2.16621 2.23679 2.83365 3.13386 3.25137 3.39972 3.45015 3.78635 3.82446 4.02245 4.09258 4.11185 4.17835 4.26370 4.30146 4.32298 4.42275 4.45620 4.57746 4.61444 4.64832 4.74057 4.76283 4.87619 4.93292 5.06602 5.10412 5.12802 5.19964 5.30398 5.35494 5.59401 5.65493 5.73119 5.75721 6.02504 6.23490 6.46113 6.95356 6.96848 7.18455 7.78966 8.76094 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.018427 B = 0.002409 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.132453 B =11618.314596 C =12408.216795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.150 3.850 3 H 0.091 0.909 4 C -0.088 4.088 5 H 0.155 0.845 6 C 0.497 3.503 7 O -0.543 6.543 8 O -0.511 6.511 9 C -0.117 4.117 10 C 0.093 3.907 11 N -0.618 5.618 12 C 0.529 3.471 13 O -0.573 6.573 14 C -0.084 4.084 15 C -0.026 4.026 16 C -0.177 4.177 17 C -0.073 4.073 18 C -0.247 4.247 19 C 0.111 3.889 20 O -0.236 6.236 21 C -0.413 4.413 22 H 0.101 0.899 23 C -0.026 4.026 24 N -0.923 5.923 25 Si 1.021 2.979 26 H -0.251 1.251 27 H -0.270 1.270 28 H -0.265 1.265 29 C -0.193 4.193 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.428 0.572 34 H 0.071 0.929 35 H 0.127 0.873 36 H 0.113 0.887 37 H 0.098 0.902 38 H 0.118 0.882 39 H 0.147 0.853 40 H 0.150 0.850 41 H 0.146 0.854 42 H 0.117 0.883 43 H 0.272 0.728 44 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.641 1.161 -22.405 29.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.046 3.954 3 H 0.109 0.891 4 C -0.107 4.107 5 H 0.173 0.827 6 C 0.340 3.660 7 O -0.433 6.433 8 O -0.325 6.325 9 C -0.154 4.154 10 C -0.028 4.028 11 N -0.354 5.354 12 C 0.320 3.680 13 O -0.452 6.452 14 C -0.123 4.123 15 C -0.027 4.027 16 C -0.196 4.196 17 C -0.091 4.091 18 C -0.266 4.266 19 C 0.061 3.939 20 O -0.143 6.143 21 C -0.489 4.489 22 H 0.118 0.882 23 C -0.223 4.223 24 N -0.562 5.562 25 Si 0.840 3.160 26 H -0.174 1.174 27 H -0.195 1.195 28 H -0.190 1.190 29 C -0.212 4.212 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.290 0.710 34 H 0.090 0.910 35 H 0.145 0.855 36 H 0.131 0.869 37 H 0.116 0.884 38 H 0.136 0.864 39 H 0.165 0.835 40 H 0.168 0.832 41 H 0.164 0.836 42 H 0.135 0.865 43 H 0.081 0.919 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 18.026 1.192 -21.954 28.431 hybrid contribution -1.800 0.207 0.372 1.849 sum 16.226 1.398 -21.582 27.037 Atomic orbital electron populations 1.22226 0.96443 1.01805 1.02138 1.21320 0.93396 0.96812 0.83873 0.89096 1.22219 0.97931 1.00474 0.90091 0.82698 1.23132 0.82844 0.79147 0.80853 1.90751 1.45252 1.35133 1.72148 1.84512 1.59060 1.44989 1.43956 1.22897 1.03684 0.93448 0.95418 1.22784 0.96214 0.88683 0.95161 1.48614 1.51427 1.31493 1.03824 1.20651 0.79920 0.84640 0.82836 1.90757 1.39682 1.30964 1.83752 1.20680 1.04543 0.99770 0.87324 1.19193 0.92667 0.95917 0.94875 1.20982 1.02164 0.99733 0.96704 1.21148 0.94354 0.98228 0.95389 1.21298 0.99032 1.03226 1.03033 1.19875 0.87313 0.93705 0.93000 1.83936 1.35732 1.55107 1.39520 1.21869 1.04785 1.21225 1.01009 0.88213 1.26633 0.94533 0.97726 1.03379 1.70207 1.12092 1.32077 1.41804 0.84509 0.78710 0.77867 0.74956 1.17444 1.19485 1.18982 1.20204 1.00027 1.05986 0.95007 0.93266 0.93302 0.91100 0.71029 0.91032 0.85525 0.86941 0.88385 0.86431 0.83481 0.83226 0.83597 0.86513 0.91890 0.87959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.17 8.16 71.98 0.59 -3.58 16 2 C 0.15 2.75 3.43 45.34 0.16 2.90 16 3 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 4 C -0.09 -0.96 3.38 -10.35 -0.04 -0.99 16 5 H 0.16 0.65 8.14 -2.39 -0.02 0.63 16 6 C 0.50 7.35 5.23 71.23 0.37 7.73 16 7 O -0.54 -11.86 16.32 21.93 0.36 -11.50 16 8 O -0.51 -5.24 13.30 -51.34 -0.68 -5.92 16 9 C -0.12 -1.06 6.35 31.99 0.20 -0.85 16 10 C 0.09 0.83 6.69 86.86 0.58 1.41 16 11 N -0.62 -11.80 3.08 -788.09 -2.43 -14.23 16 12 C 0.53 14.63 7.62 87.66 0.67 15.29 16 13 O -0.57 -22.47 15.02 -3.06 -0.05 -22.51 16 14 C -0.08 -1.96 4.84 29.10 0.14 -1.82 16 15 C -0.03 -0.91 4.37 -19.88 -0.09 -1.00 16 16 C -0.18 -5.79 9.70 22.30 0.22 -5.57 16 17 C -0.07 -2.68 10.04 22.25 0.22 -2.45 16 18 C -0.25 -11.52 9.17 22.39 0.21 -11.32 16 19 C 0.11 5.94 6.65 22.57 0.15 6.09 16 20 O -0.24 -15.07 9.76 -22.79 -0.22 -15.29 16 21 C -0.41 -25.31 9.49 67.92 0.64 -24.67 16 22 H 0.10 5.65 5.21 -2.91 -0.02 5.63 16 23 C -0.03 -1.54 5.49 84.83 0.47 -1.07 16 24 N -0.92 -59.03 13.67 21.61 0.30 -58.73 16 25 Si 1.02 44.79 29.55 68.60 2.03 46.82 16 26 H -0.25 -10.19 7.11 99.48 0.71 -9.48 16 27 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 28 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 29 C -0.19 -8.88 9.65 22.39 0.22 -8.67 16 30 H 0.05 1.35 8.10 -2.39 -0.02 1.33 16 31 H 0.05 1.55 6.93 -2.39 -0.02 1.53 16 32 H 0.07 1.52 6.66 -2.39 -0.02 1.50 16 33 H 0.43 1.26 9.10 -74.06 -0.67 0.59 16 34 H 0.07 1.07 7.22 -2.39 -0.02 1.05 16 35 H 0.13 0.35 8.14 -2.39 -0.02 0.33 16 36 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 37 H 0.10 0.72 7.47 -2.39 -0.02 0.70 16 38 H 0.12 2.36 7.79 -2.38 -0.02 2.34 16 39 H 0.15 2.04 8.08 -2.39 -0.02 2.02 16 40 H 0.15 3.57 8.06 -2.91 -0.02 3.54 16 41 H 0.15 4.16 8.06 -2.91 -0.02 4.14 16 42 H 0.12 5.52 5.64 -2.91 -0.02 5.50 16 43 H 0.27 15.85 8.31 -92.70 -0.77 15.08 16 44 H 0.10 4.76 8.06 -2.91 -0.02 4.74 16 Total: -1.00 -92.23 369.54 4.38 -87.84 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: 0.37 Total: 22.11 kcal Atomic # 6 Polarization: -33.28 SS G_CDS: 4.71 Total: -28.58 kcal Atomic # 7 Polarization: -70.83 SS G_CDS: -2.13 Total: -72.96 kcal Atomic # 8 Polarization: -54.64 SS G_CDS: -0.59 Total: -55.23 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -92.23 4.38 -87.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604625688.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.704 kcal (2) G-P(sol) polarization free energy of solvation -92.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds