Wall clock time and date at job start Tue Mar 31 2020 17:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.99772 * 2 1 4 4 C 1.54334 * 109.99183 * 238.96330 * 2 1 3 5 5 H 1.09000 * 110.51471 * 336.97627 * 4 2 1 6 6 C 1.50694 * 111.00355 * 100.12867 * 4 2 1 7 7 O 1.20827 * 120.00052 * 355.22876 * 6 4 2 8 8 O 1.34234 * 119.99641 * 175.23622 * 6 4 2 9 9 C 1.55161 * 103.01634 * 218.66857 * 4 2 1 10 10 C 1.54907 * 101.58324 * 35.30588 * 9 4 2 11 11 N 1.47016 * 109.88075 * 121.09259 * 2 1 3 12 12 C 1.34783 * 125.65055 * 298.39677 * 11 2 1 13 13 O 1.21277 * 119.99543 * 359.71425 * 12 11 2 14 14 C 1.50696 * 120.00024 * 179.71629 * 12 11 2 15 15 C 1.50700 * 109.46925 * 179.97438 * 14 12 11 16 16 C 1.38323 * 119.96515 * 89.99954 * 15 14 12 17 17 C 1.38277 * 120.13836 * 179.97438 * 16 15 14 18 18 C 1.38128 * 120.06979 * 359.97438 * 17 16 15 19 19 C 1.38856 * 119.92829 * 0.02562 * 18 17 16 20 20 O 1.35753 * 120.06687 * 179.97438 * 19 18 17 21 21 C 1.34823 * 116.99837 * 354.47436 * 20 19 18 22 22 H 1.07998 * 120.00763 * 5.05252 * 21 20 19 23 23 C 1.38660 * 119.99712 * 185.04821 * 21 20 19 24 24 N 1.31557 * 120.00170 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99998 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47082 * 60.00506 * 25 23 21 27 27 H 1.48505 * 109.47043 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47189 * 300.00294 * 25 23 21 29 29 C 1.38079 * 119.96523 * 269.72610 * 15 14 12 30 30 H 1.08998 * 109.47679 * 300.36361 * 1 2 3 31 31 H 1.09004 * 109.47214 * 60.35687 * 1 2 3 32 32 H 1.08994 * 109.47235 * 180.35736 * 1 2 3 33 33 H 0.96703 * 116.99411 * 179.97438 * 8 6 4 34 34 H 1.08998 * 110.99905 * 277.22582 * 9 4 2 35 35 H 1.09002 * 111.00221 * 153.38058 * 9 4 2 36 36 H 1.09005 * 110.36486 * 204.15543 * 10 9 4 37 37 H 1.08998 * 110.46123 * 81.87798 * 10 9 4 38 38 H 1.08999 * 109.47229 * 299.99804 * 14 12 11 39 39 H 1.08998 * 109.46992 * 59.99949 * 14 12 11 40 40 H 1.07997 * 119.93353 * 359.97438 * 16 15 14 41 41 H 1.08001 * 119.96693 * 180.02562 * 17 16 15 42 42 H 1.07991 * 120.03508 * 180.02562 * 18 17 16 43 43 H 0.96997 * 120.00384 * 180.02562 * 24 23 21 44 44 H 1.07999 * 120.03245 * 0.02562 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0576 -0.7478 -1.2427 5 1 1.3053 -1.4406 -1.6197 6 6 2.4748 0.2208 -2.3192 7 8 2.2905 1.4056 -2.1703 8 8 3.0510 -0.2329 -3.4435 9 6 3.2863 -1.5184 -0.6913 10 6 2.8098 -1.8825 0.7369 11 7 2.0300 -0.7140 1.1839 12 6 1.8073 -0.3619 2.4658 13 8 1.1474 0.6239 2.7179 14 6 2.3782 -1.1932 3.5855 15 6 1.9872 -0.5889 4.9095 16 6 0.8132 -0.9800 5.5277 17 6 0.4512 -0.4282 6.7428 18 6 1.2618 0.5154 7.3434 19 6 2.4409 0.9100 6.7254 20 8 3.2394 1.8375 7.3129 21 6 2.7761 2.4200 8.4371 22 1 1.8479 2.0850 8.8759 23 6 3.4916 3.4492 9.0300 24 7 4.6221 3.8576 8.4952 25 14 2.8495 4.2568 10.5872 26 1 2.7310 3.2376 11.6606 27 1 3.7911 5.3218 11.0169 28 1 1.5158 4.8535 10.3216 29 6 2.8040 0.3505 5.5070 30 1 -0.3634 0.5194 0.8867 31 1 -0.3634 0.5083 -0.8932 32 1 -0.3633 -1.0276 0.0064 33 1 3.3010 0.4263 -4.1054 34 1 4.1669 -0.8769 -0.6578 35 1 3.4807 -2.4156 -1.2790 36 1 3.6654 -2.0411 1.3934 37 1 2.1805 -2.7722 0.7134 38 1 1.9877 -2.2087 3.5198 39 1 3.4649 -1.2158 3.5036 40 1 0.1780 -1.7178 5.0604 41 1 -0.4658 -0.7359 7.2232 42 1 0.9787 0.9456 8.2926 43 1 5.1228 4.5774 8.9102 44 1 3.7225 0.6525 5.0257 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604625690.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:42 Heat of formation + Delta-G solvation = -152.881912 kcal Electronic energy + Delta-G solvation = -28005.773744 eV Core-core repulsion = 23887.709280 eV Total energy + Delta-G solvation = -4118.064464 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.93072 -41.04419 -40.47602 -38.75490 -37.94093 -37.13694 -34.36633 -33.87827 -32.82884 -32.31313 -30.86696 -28.64627 -27.67958 -27.22144 -24.57004 -23.68044 -23.25489 -22.61287 -21.43019 -20.14306 -19.42816 -19.07653 -18.72430 -18.43219 -17.72554 -16.90802 -16.68120 -16.61656 -16.50353 -16.09944 -15.94348 -15.49911 -15.25193 -14.96136 -14.80453 -14.48255 -14.36381 -14.13786 -13.91596 -13.70544 -13.60692 -13.40244 -12.97713 -12.90799 -12.78219 -12.66424 -12.59107 -12.46991 -12.37343 -12.22173 -12.13215 -12.04354 -11.83238 -11.54577 -11.21488 -10.91169 -10.78543 -9.69772 -9.63731 -8.97790 -8.47722 -6.16382 0.50943 0.75937 1.12357 1.32495 1.44295 1.49537 1.64896 1.71368 2.16949 2.25520 2.83170 3.10453 3.19840 3.43668 3.44846 3.78906 3.90409 3.99837 4.10442 4.15309 4.23831 4.31043 4.31585 4.41462 4.44022 4.53101 4.57761 4.62304 4.69276 4.73698 4.80242 4.99154 5.01269 5.07267 5.12129 5.14317 5.19044 5.30409 5.39395 5.57644 5.65029 5.72703 5.75315 6.02096 6.23351 6.48954 6.93203 6.96650 7.20342 7.78651 8.75877 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.018413 B = 0.002367 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.316130 B =11828.367443 C =12514.351848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.138 3.862 3 H 0.049 0.951 4 C -0.085 4.085 5 H 0.160 0.840 6 C 0.494 3.506 7 O -0.555 6.555 8 O -0.501 6.501 9 C -0.111 4.111 10 C 0.088 3.912 11 N -0.619 5.619 12 C 0.527 3.473 13 O -0.577 6.577 14 C -0.082 4.082 15 C -0.026 4.026 16 C -0.178 4.178 17 C -0.074 4.074 18 C -0.247 4.247 19 C 0.111 3.889 20 O -0.235 6.235 21 C -0.415 4.415 22 H 0.100 0.900 23 C -0.025 4.025 24 N -0.923 5.923 25 Si 1.020 2.980 26 H -0.253 1.253 27 H -0.270 1.270 28 H -0.260 1.260 29 C -0.193 4.193 30 H 0.039 0.961 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.429 0.571 34 H 0.071 0.929 35 H 0.138 0.862 36 H 0.101 0.899 37 H 0.111 0.889 38 H 0.148 0.852 39 H 0.120 0.880 40 H 0.149 0.851 41 H 0.146 0.854 42 H 0.118 0.882 43 H 0.273 0.727 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.978 -19.617 -23.129 30.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.035 3.965 3 H 0.067 0.933 4 C -0.104 4.104 5 H 0.178 0.822 6 C 0.337 3.663 7 O -0.446 6.446 8 O -0.314 6.314 9 C -0.148 4.148 10 C -0.033 4.033 11 N -0.354 5.354 12 C 0.317 3.683 13 O -0.456 6.456 14 C -0.121 4.121 15 C -0.027 4.027 16 C -0.196 4.196 17 C -0.092 4.092 18 C -0.266 4.266 19 C 0.061 3.939 20 O -0.142 6.142 21 C -0.491 4.491 22 H 0.118 0.882 23 C -0.222 4.222 24 N -0.562 5.562 25 Si 0.839 3.161 26 H -0.177 1.177 27 H -0.194 1.194 28 H -0.185 1.185 29 C -0.213 4.213 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.103 0.897 33 H 0.291 0.709 34 H 0.090 0.910 35 H 0.156 0.844 36 H 0.119 0.881 37 H 0.129 0.871 38 H 0.165 0.835 39 H 0.138 0.862 40 H 0.167 0.833 41 H 0.164 0.836 42 H 0.135 0.865 43 H 0.081 0.919 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.098 -18.821 -22.625 29.868 hybrid contribution 0.166 1.932 0.413 1.983 sum -4.932 -16.889 -22.211 28.336 Atomic orbital electron populations 1.22049 0.93846 1.03339 1.02020 1.21320 0.95325 0.95736 0.84167 0.93280 1.22088 1.02274 0.96207 0.89881 0.82240 1.23273 0.72759 0.87808 0.82459 1.90787 1.53541 1.20569 1.79717 1.84459 1.71950 1.46270 1.28753 1.22874 0.94603 1.02007 0.95347 1.22838 0.96698 0.88202 0.95533 1.48622 1.53433 1.29547 1.03796 1.20714 0.79728 0.84913 0.82953 1.90758 1.41659 1.29341 1.83811 1.20675 1.03771 1.00518 0.87162 1.19204 0.94067 0.94551 0.94869 1.20974 0.97509 1.04464 0.96699 1.21147 0.98493 0.94154 0.95361 1.21301 0.97491 1.04754 1.03077 1.19883 0.90939 0.90091 0.93015 1.83932 1.42213 1.48683 1.39391 1.21795 1.09138 1.17172 1.00996 0.88228 1.26637 0.95822 0.96367 1.03405 1.70186 1.15595 1.28533 1.41864 0.84636 0.78194 0.77973 0.75305 1.17742 1.19447 1.18492 1.20214 1.02930 1.03068 0.95067 0.94211 0.91233 0.89697 0.70897 0.91050 0.84355 0.88072 0.87054 0.83453 0.86214 0.83309 0.83603 0.86453 0.91855 0.87856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 9.11 71.98 0.66 -2.56 16 2 C 0.14 2.91 2.87 45.35 0.13 3.04 16 3 H 0.05 1.49 6.89 -2.39 -0.02 1.47 16 4 C -0.09 -0.94 2.97 -10.35 -0.03 -0.97 16 5 H 0.16 0.72 7.84 -2.39 -0.02 0.70 16 6 C 0.49 7.48 7.64 71.23 0.54 8.03 16 7 O -0.56 -14.08 16.24 21.96 0.36 -13.72 16 8 O -0.50 -4.06 13.41 -51.45 -0.69 -4.75 16 9 C -0.11 -0.69 6.51 31.99 0.21 -0.49 16 10 C 0.09 0.71 6.69 86.85 0.58 1.29 16 11 N -0.62 -12.41 3.06 -788.05 -2.41 -14.82 16 12 C 0.53 15.20 7.63 87.65 0.67 15.86 16 13 O -0.58 -23.88 15.08 -3.02 -0.05 -23.92 16 14 C -0.08 -1.95 4.84 29.10 0.14 -1.81 16 15 C -0.03 -0.94 4.37 -19.88 -0.09 -1.03 16 16 C -0.18 -5.92 9.70 22.30 0.22 -5.71 16 17 C -0.07 -2.73 10.04 22.25 0.22 -2.51 16 18 C -0.25 -11.65 9.17 22.39 0.21 -11.45 16 19 C 0.11 5.98 6.65 22.58 0.15 6.13 16 20 O -0.24 -15.12 9.76 -22.70 -0.22 -15.34 16 21 C -0.41 -25.60 9.49 67.92 0.64 -24.96 16 22 H 0.10 5.65 5.20 -2.91 -0.02 5.64 16 23 C -0.03 -1.51 5.49 84.83 0.47 -1.05 16 24 N -0.92 -59.31 13.67 21.62 0.30 -59.01 16 25 Si 1.02 44.99 29.55 68.60 2.03 47.01 16 26 H -0.25 -10.34 7.11 99.48 0.71 -9.64 16 27 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 28 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 29 C -0.19 -9.00 9.64 22.39 0.22 -8.78 16 30 H 0.04 1.15 6.89 -2.39 -0.02 1.13 16 31 H 0.07 1.32 8.14 -2.39 -0.02 1.31 16 32 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.43 0.57 9.10 -74.05 -0.67 -0.10 16 34 H 0.07 0.66 8.04 -2.39 -0.02 0.65 16 35 H 0.14 -0.10 8.14 -2.39 -0.02 -0.12 16 36 H 0.10 0.59 7.48 -2.38 -0.02 0.57 16 37 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 38 H 0.15 2.07 8.09 -2.39 -0.02 2.05 16 39 H 0.12 2.37 7.79 -2.39 -0.02 2.36 16 40 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 41 H 0.15 4.24 8.06 -2.91 -0.02 4.21 16 42 H 0.12 5.58 5.64 -2.92 -0.02 5.57 16 43 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 44 H 0.10 4.84 8.06 -2.91 -0.02 4.81 16 Total: -1.00 -96.06 372.91 4.61 -91.45 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: 0.37 Total: 20.06 kcal Atomic # 6 Polarization: -31.89 SS G_CDS: 4.93 Total: -26.96 kcal Atomic # 7 Polarization: -71.72 SS G_CDS: -2.12 Total: -73.83 kcal Atomic # 8 Polarization: -57.13 SS G_CDS: -0.60 Total: -57.73 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -96.06 4.61 -91.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604625690.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.427 kcal (2) G-P(sol) polarization free energy of solvation -96.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds