Wall clock time and date at job start Tue Mar 31 2020 17:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 110.32860 * 2 1 4 4 C 1.54910 * 110.46093 * 122.29939 * 2 1 3 5 5 H 1.09000 * 111.00275 * 37.82187 * 4 2 1 6 6 C 1.50699 * 111.00609 * 273.97248 * 4 2 1 7 7 O 1.20820 * 119.99917 * 359.97438 * 6 4 2 8 8 O 1.34229 * 119.99751 * 180.02562 * 6 4 2 9 9 C 1.55159 * 101.58191 * 155.89290 * 4 2 1 10 10 C 1.54319 * 102.94140 * 324.50206 * 9 4 2 11 11 N 1.47020 * 107.27584 * 22.19075 * 10 9 4 12 12 C 1.34775 * 125.64902 * 181.03560 * 11 10 9 13 13 O 1.21284 * 119.99705 * 180.02562 * 12 11 10 14 14 C 1.50700 * 120.00007 * 0.02792 * 12 11 10 15 15 C 1.50703 * 109.46782 * 179.97438 * 14 12 11 16 16 C 1.38325 * 119.96487 * 269.71791 * 15 14 12 17 17 C 1.38276 * 120.13326 * 179.76595 * 16 15 14 18 18 C 1.38120 * 120.07374 * 0.51741 * 17 16 15 19 19 C 1.38858 * 119.92790 * 359.74573 * 18 17 16 20 20 O 1.35745 * 120.06801 * 179.97438 * 19 18 17 21 21 C 1.34836 * 117.00130 * 354.47998 * 20 19 18 22 22 H 1.07996 * 119.99866 * 5.06317 * 21 20 19 23 23 C 1.38653 * 119.99746 * 185.06195 * 21 20 19 24 24 N 1.31556 * 119.99761 * 180.02562 * 23 21 20 25 25 Si 1.86795 * 120.00317 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47151 * 90.00241 * 25 23 21 27 27 H 1.48505 * 109.47263 * 209.99826 * 25 23 21 28 28 H 1.48496 * 109.47310 * 329.99849 * 25 23 21 29 29 C 1.38070 * 119.96252 * 90.00248 * 15 14 12 30 30 H 1.09001 * 109.47180 * 179.29894 * 1 2 3 31 31 H 1.09003 * 109.47651 * 299.29599 * 1 2 3 32 32 H 1.09000 * 109.47426 * 59.29938 * 1 2 3 33 33 H 0.96702 * 116.99486 * 179.97438 * 8 6 4 34 34 H 1.09004 * 110.72074 * 206.13396 * 9 4 2 35 35 H 1.09000 * 110.87121 * 82.93447 * 9 4 2 36 36 H 1.09004 * 109.88170 * 262.77100 * 10 9 4 37 37 H 1.09006 * 110.00811 * 141.68211 * 10 9 4 38 38 H 1.08994 * 109.46920 * 299.99656 * 14 12 11 39 39 H 1.09005 * 109.47342 * 59.99869 * 14 12 11 40 40 H 1.07996 * 119.92977 * 0.02562 * 16 15 14 41 41 H 1.08005 * 119.96611 * 180.25905 * 17 16 15 42 42 H 1.08003 * 120.03892 * 179.72015 * 18 17 16 43 43 H 0.96998 * 120.00406 * 179.97438 * 24 23 21 44 44 H 1.08001 * 120.04275 * 359.95472 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 6 2.0715 -0.7755 1.2268 5 1 1.4549 -1.6487 1.4403 6 6 2.1690 0.1221 2.4333 7 8 1.8427 1.2825 2.3509 8 8 2.6193 -0.3673 3.5993 9 6 3.4803 -1.1971 0.7318 10 6 3.2508 -1.4739 -0.7689 11 7 2.0430 -0.7372 -1.1691 12 6 1.4959 -0.7356 -2.4008 13 8 0.4939 -0.0877 -2.6184 14 6 2.1289 -1.5389 -3.5075 15 6 1.3289 -1.3680 -4.7732 16 6 0.2909 -2.2372 -5.0571 17 6 -0.4485 -2.0806 -6.2150 18 6 -0.1458 -1.0618 -7.0971 19 6 0.8990 -0.1909 -6.8175 20 8 1.1993 0.8110 -7.6827 21 6 0.5213 0.8374 -8.8480 22 1 -0.2781 0.1328 -9.0236 23 6 0.8506 1.7691 -9.8206 24 7 0.1888 1.7951 -10.9573 25 14 2.2337 2.9873 -9.5170 26 1 3.5164 2.4081 -9.9906 27 1 1.9562 4.2455 -10.2555 28 1 2.3281 3.2770 -8.0636 29 6 1.6365 -0.3475 -5.6509 30 1 -0.3633 -1.0276 -0.0126 31 1 -0.3634 0.5029 0.8962 32 1 -0.3634 0.5247 -0.8836 33 1 2.6644 0.2468 4.3449 34 1 3.8149 -2.0994 1.2437 35 1 4.1982 -0.3886 0.8694 36 1 3.1042 -2.5418 -0.9307 37 1 4.1063 -1.1254 -1.3476 38 1 3.1485 -1.1905 -3.6719 39 1 2.1456 -2.5925 -3.2281 40 1 0.0550 -3.0371 -4.3710 41 1 -1.2611 -2.7582 -6.4320 42 1 -0.7209 -0.9427 -8.0035 43 1 0.4188 2.4471 -11.6376 44 1 2.4495 0.3284 -5.4306 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604625691.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:46 Heat of formation + Delta-G solvation = -121.419952 kcal Electronic energy + Delta-G solvation = -28042.013512 eV Core-core repulsion = 23925.313341 eV Total energy + Delta-G solvation = -4116.700171 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.24884 -40.05574 -39.07222 -37.69449 -36.59391 -36.45342 -32.93370 -32.34187 -31.92164 -31.46101 -29.39684 -27.54253 -26.68522 -25.13996 -23.78664 -23.09732 -21.77525 -21.20330 -20.44160 -19.25308 -18.43688 -17.73159 -17.64771 -17.07986 -16.90982 -16.01294 -15.73163 -15.37757 -15.16945 -14.83209 -14.48164 -14.26731 -14.05923 -13.82950 -13.70531 -13.48988 -13.31339 -13.01960 -12.62338 -12.58147 -12.42848 -12.22640 -12.12348 -12.02722 -11.91843 -11.68066 -11.51441 -11.28289 -11.19302 -10.95251 -10.81149 -10.76446 -10.67790 -10.11984 -9.57772 -9.34485 -8.85731 -8.82641 -8.10796 -7.31324 -6.36579 -4.03154 1.68442 2.00291 2.30817 2.37009 2.67533 2.95942 3.25687 3.28537 3.44863 3.74720 3.91981 4.28332 4.33163 4.45549 4.64005 4.68999 4.75955 4.81102 4.91334 5.06052 5.09193 5.14432 5.17533 5.25628 5.27275 5.38913 5.46771 5.53682 5.58321 5.71995 5.85288 5.87321 5.97807 6.05544 6.16369 6.29542 6.35204 6.56956 6.82999 7.13911 7.25124 7.32032 7.36503 7.39227 7.65226 7.85676 8.09211 8.20056 8.99035 9.62307 10.71278 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.019280 B = 0.002410 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.946754 B =11614.888514 C =12236.376989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.153 3.847 3 H 0.089 0.911 4 C -0.098 4.098 5 H 0.124 0.876 6 C 0.491 3.509 7 O -0.505 6.505 8 O -0.515 6.515 9 C -0.117 4.117 10 C 0.100 3.900 11 N -0.626 5.626 12 C 0.533 3.467 13 O -0.508 6.508 14 C -0.088 4.088 15 C -0.036 4.036 16 C -0.187 4.187 17 C -0.076 4.076 18 C -0.217 4.217 19 C 0.160 3.840 20 O -0.219 6.219 21 C -0.388 4.388 22 H 0.106 0.894 23 C 0.062 3.938 24 N -0.881 5.881 25 Si 0.905 3.095 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.260 1.260 29 C -0.174 4.174 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.095 0.905 33 H 0.412 0.588 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.104 0.896 41 H 0.110 0.890 42 H 0.132 0.868 43 H 0.279 0.721 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.175 -9.961 27.483 30.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.050 3.950 3 H 0.107 0.893 4 C -0.118 4.118 5 H 0.142 0.858 6 C 0.333 3.667 7 O -0.392 6.392 8 O -0.327 6.327 9 C -0.155 4.155 10 C -0.023 4.023 11 N -0.364 5.364 12 C 0.322 3.678 13 O -0.382 6.382 14 C -0.128 4.128 15 C -0.037 4.037 16 C -0.206 4.206 17 C -0.094 4.094 18 C -0.236 4.236 19 C 0.109 3.891 20 O -0.125 6.125 21 C -0.463 4.463 22 H 0.123 0.877 23 C -0.140 4.140 24 N -0.520 5.520 25 Si 0.730 3.270 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.184 1.184 29 C -0.193 4.193 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.113 0.887 33 H 0.271 0.729 34 H 0.116 0.884 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.122 0.878 41 H 0.128 0.872 42 H 0.150 0.850 43 H 0.089 0.911 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 7.601 -9.243 26.676 29.238 hybrid contribution 0.511 0.866 0.542 1.142 sum 8.112 -8.378 27.218 29.611 Atomic orbital electron populations 1.22177 0.92964 1.02804 1.04282 1.21647 0.95969 0.95487 0.81911 0.89314 1.22255 1.00420 0.98925 0.90212 0.85808 1.22953 0.72811 0.87099 0.83875 1.90774 1.44969 1.18828 1.84587 1.84517 1.78566 1.48198 1.21394 1.22625 0.94460 1.03476 0.94958 1.22052 0.88333 0.97330 0.94632 1.48611 1.28454 1.49944 1.09421 1.20450 0.84138 0.81892 0.81273 1.90727 1.24481 1.42077 1.80878 1.20576 0.99998 1.00688 0.91506 1.18648 0.96227 0.95627 0.93159 1.20403 0.99188 1.01998 0.99040 1.20732 0.98023 0.96855 0.93806 1.21297 1.01242 0.98554 1.02539 1.19009 0.92646 0.87467 0.90013 1.83570 1.59217 1.42443 1.27233 1.20763 1.16145 1.19945 0.89487 0.87653 1.24453 0.98160 0.97581 0.93844 1.69646 1.40470 1.36172 1.05690 0.86189 0.81377 0.79822 0.79575 1.19933 1.20826 1.18361 1.19937 1.03221 1.01072 0.95082 0.92537 0.92035 0.88678 0.72856 0.88409 0.89852 0.90533 0.90449 0.88307 0.88330 0.87765 0.87188 0.84998 0.91130 0.86868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 8.66 37.15 0.32 -1.58 16 2 C 0.15 1.56 2.88 -66.42 -0.19 1.37 16 3 H 0.09 1.06 7.40 -51.93 -0.38 0.67 16 4 C -0.10 -0.66 2.96 -89.62 -0.27 -0.92 16 5 H 0.12 0.67 8.06 -51.93 -0.42 0.25 16 6 C 0.49 3.72 7.65 36.01 0.28 3.99 16 7 O -0.50 -5.62 16.48 -18.75 -0.31 -5.93 16 8 O -0.51 -2.49 13.42 -39.26 -0.53 -3.02 16 9 C -0.12 -0.54 6.41 -24.90 -0.16 -0.70 16 10 C 0.10 0.59 6.49 -3.07 -0.02 0.57 16 11 N -0.63 -6.43 3.24 -163.05 -0.53 -6.96 16 12 C 0.53 7.39 7.62 -10.99 -0.08 7.31 16 13 O -0.51 -9.37 13.72 5.55 0.08 -9.29 16 14 C -0.09 -1.09 5.02 -29.03 -0.15 -1.23 16 15 C -0.04 -0.62 4.37 -104.65 -0.46 -1.08 16 16 C -0.19 -3.24 9.70 -39.54 -0.38 -3.63 16 17 C -0.08 -1.43 10.04 -39.61 -0.40 -1.83 16 18 C -0.22 -4.88 9.17 -39.40 -0.36 -5.24 16 19 C 0.16 3.86 6.65 -39.10 -0.26 3.60 16 20 O -0.22 -5.99 8.59 0.05 0.00 -5.99 16 21 C -0.39 -11.21 9.95 30.89 0.31 -10.91 16 22 H 0.11 3.10 5.44 -52.49 -0.29 2.82 16 23 C 0.06 1.79 5.49 -17.52 -0.10 1.70 16 24 N -0.88 -25.95 13.96 55.48 0.77 -25.17 16 25 Si 0.90 22.21 28.62 -169.99 -4.86 17.35 16 26 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 28 H -0.26 -6.45 7.11 56.52 0.40 -6.05 16 29 C -0.17 -3.59 9.65 -39.40 -0.38 -3.97 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 1.41 5.99 -51.93 -0.31 1.10 16 33 H 0.41 0.44 9.10 45.56 0.41 0.85 16 34 H 0.10 0.25 8.14 -51.93 -0.42 -0.18 16 35 H 0.08 0.39 8.04 -51.93 -0.42 -0.03 16 36 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.10 1.03 8.08 -51.93 -0.42 0.61 16 39 H 0.10 0.92 8.08 -51.93 -0.42 0.50 16 40 H 0.10 1.51 8.06 -52.49 -0.42 1.08 16 41 H 0.11 1.77 8.06 -52.48 -0.42 1.34 16 42 H 0.13 3.09 5.64 -52.48 -0.30 2.80 16 43 H 0.28 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.11 2.21 8.06 -52.49 -0.42 1.78 16 LS Contribution 371.07 15.07 5.59 5.59 Total: -1.00 -36.18 371.07 -7.14 -43.32 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -5.05 Total: 2.67 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: -2.30 Total: -12.56 kcal Atomic # 7 Polarization: -32.38 SS G_CDS: 0.25 Total: -32.13 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.76 Total: -24.23 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.86 Total: 17.35 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.18 -7.14 -43.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604625691.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.104 kcal (2) G-P(sol) polarization free energy of solvation -36.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds