Wall clock time and date at job start Tue Mar 31 2020 17:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 110.32860 * 2 1 4 4 C 1.54910 * 110.46093 * 122.29939 * 2 1 3 5 5 H 1.09000 * 111.00275 * 37.82187 * 4 2 1 6 6 C 1.50699 * 111.00609 * 273.97248 * 4 2 1 7 7 O 1.20820 * 119.99917 * 359.97438 * 6 4 2 8 8 O 1.34229 * 119.99751 * 180.02562 * 6 4 2 9 9 C 1.55159 * 101.58191 * 155.89290 * 4 2 1 10 10 C 1.54319 * 102.94140 * 324.50206 * 9 4 2 11 11 N 1.47020 * 107.27584 * 22.19075 * 10 9 4 12 12 C 1.34775 * 125.64902 * 181.03560 * 11 10 9 13 13 O 1.21284 * 119.99705 * 180.02562 * 12 11 10 14 14 C 1.50700 * 120.00007 * 0.02792 * 12 11 10 15 15 C 1.50703 * 109.46782 * 179.97438 * 14 12 11 16 16 C 1.38325 * 119.96487 * 269.71791 * 15 14 12 17 17 C 1.38276 * 120.13326 * 179.76595 * 16 15 14 18 18 C 1.38120 * 120.07374 * 0.51741 * 17 16 15 19 19 C 1.38858 * 119.92790 * 359.74573 * 18 17 16 20 20 O 1.35745 * 120.06801 * 179.97438 * 19 18 17 21 21 C 1.34836 * 117.00130 * 354.47998 * 20 19 18 22 22 H 1.07996 * 119.99866 * 5.06317 * 21 20 19 23 23 C 1.38653 * 119.99746 * 185.06195 * 21 20 19 24 24 N 1.31556 * 119.99761 * 180.02562 * 23 21 20 25 25 Si 1.86795 * 120.00317 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47151 * 90.00241 * 25 23 21 27 27 H 1.48505 * 109.47263 * 209.99826 * 25 23 21 28 28 H 1.48496 * 109.47310 * 329.99849 * 25 23 21 29 29 C 1.38070 * 119.96252 * 90.00248 * 15 14 12 30 30 H 1.09001 * 109.47180 * 179.29894 * 1 2 3 31 31 H 1.09003 * 109.47651 * 299.29599 * 1 2 3 32 32 H 1.09000 * 109.47426 * 59.29938 * 1 2 3 33 33 H 0.96702 * 116.99486 * 179.97438 * 8 6 4 34 34 H 1.09004 * 110.72074 * 206.13396 * 9 4 2 35 35 H 1.09000 * 110.87121 * 82.93447 * 9 4 2 36 36 H 1.09004 * 109.88170 * 262.77100 * 10 9 4 37 37 H 1.09006 * 110.00811 * 141.68211 * 10 9 4 38 38 H 1.08994 * 109.46920 * 299.99656 * 14 12 11 39 39 H 1.09005 * 109.47342 * 59.99869 * 14 12 11 40 40 H 1.07996 * 119.92977 * 0.02562 * 16 15 14 41 41 H 1.08005 * 119.96611 * 180.25905 * 17 16 15 42 42 H 1.08003 * 120.03892 * 179.72015 * 18 17 16 43 43 H 0.96998 * 120.00406 * 179.97438 * 24 23 21 44 44 H 1.08001 * 120.04275 * 359.95472 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 6 2.0715 -0.7755 1.2268 5 1 1.4549 -1.6487 1.4403 6 6 2.1690 0.1221 2.4333 7 8 1.8427 1.2825 2.3509 8 8 2.6193 -0.3673 3.5993 9 6 3.4803 -1.1971 0.7318 10 6 3.2508 -1.4739 -0.7689 11 7 2.0430 -0.7372 -1.1691 12 6 1.4959 -0.7356 -2.4008 13 8 0.4939 -0.0877 -2.6184 14 6 2.1289 -1.5389 -3.5075 15 6 1.3289 -1.3680 -4.7732 16 6 0.2909 -2.2372 -5.0571 17 6 -0.4485 -2.0806 -6.2150 18 6 -0.1458 -1.0618 -7.0971 19 6 0.8990 -0.1909 -6.8175 20 8 1.1993 0.8110 -7.6827 21 6 0.5213 0.8374 -8.8480 22 1 -0.2781 0.1328 -9.0236 23 6 0.8506 1.7691 -9.8206 24 7 0.1888 1.7951 -10.9573 25 14 2.2337 2.9873 -9.5170 26 1 3.5164 2.4081 -9.9906 27 1 1.9562 4.2455 -10.2555 28 1 2.3281 3.2770 -8.0636 29 6 1.6365 -0.3475 -5.6509 30 1 -0.3633 -1.0276 -0.0126 31 1 -0.3634 0.5029 0.8962 32 1 -0.3634 0.5247 -0.8836 33 1 2.6644 0.2468 4.3449 34 1 3.8149 -2.0994 1.2437 35 1 4.1982 -0.3886 0.8694 36 1 3.1042 -2.5418 -0.9307 37 1 4.1063 -1.1254 -1.3476 38 1 3.1485 -1.1905 -3.6719 39 1 2.1456 -2.5925 -3.2281 40 1 0.0550 -3.0371 -4.3710 41 1 -1.2611 -2.7582 -6.4320 42 1 -0.7209 -0.9427 -8.0035 43 1 0.4188 2.4471 -11.6376 44 1 2.4495 0.3284 -5.4306 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604625691.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:45 Heat of formation + Delta-G solvation = -146.850152 kcal Electronic energy + Delta-G solvation = -28043.116248 eV Core-core repulsion = 23925.313341 eV Total energy + Delta-G solvation = -4117.802907 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.92005 -41.09071 -40.55479 -38.77549 -37.97397 -37.10563 -34.49236 -33.95375 -32.83124 -32.34328 -31.05501 -28.65764 -27.57232 -27.14566 -24.64255 -23.67995 -23.30693 -22.46001 -21.39428 -20.15833 -19.61807 -19.07667 -18.78724 -18.37147 -17.69552 -16.88331 -16.83116 -16.52693 -16.47981 -16.08847 -15.77909 -15.61639 -15.16986 -15.11392 -14.87521 -14.60186 -14.37774 -14.20815 -14.15090 -13.87872 -13.66284 -13.26601 -13.04160 -13.00495 -12.77534 -12.65247 -12.57141 -12.50099 -12.43855 -12.33559 -12.11370 -11.93889 -11.80654 -11.53678 -11.31123 -10.92155 -10.66640 -9.66833 -9.66063 -9.05829 -8.50821 -6.23389 0.48338 0.70849 1.13426 1.28601 1.33183 1.50123 1.64771 1.72467 2.27095 2.29125 2.76937 3.04570 3.09812 3.19049 3.44301 3.76000 3.87374 4.00124 4.08342 4.16247 4.20979 4.29573 4.30306 4.42297 4.45147 4.53867 4.56009 4.64692 4.66297 4.70858 4.84545 4.94586 4.99422 5.03063 5.13245 5.18706 5.25405 5.39519 5.45809 5.58632 5.65607 5.73217 5.76918 5.91692 6.25180 6.51088 6.83548 6.95375 7.23046 7.58982 8.61034 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.019280 B = 0.002410 C = 0.002288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.946754 B =11614.888514 C =12236.376989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.147 3.853 3 H 0.063 0.937 4 C -0.090 4.090 5 H 0.146 0.854 6 C 0.498 3.502 7 O -0.550 6.550 8 O -0.503 6.503 9 C -0.107 4.107 10 C 0.089 3.911 11 N -0.619 5.619 12 C 0.528 3.472 13 O -0.569 6.569 14 C -0.082 4.082 15 C -0.028 4.028 16 C -0.168 4.168 17 C -0.078 4.078 18 C -0.241 4.241 19 C 0.118 3.882 20 O -0.248 6.248 21 C -0.399 4.399 22 H 0.080 0.920 23 C 0.009 3.991 24 N -0.923 5.923 25 Si 0.971 3.029 26 H -0.261 1.261 27 H -0.266 1.266 28 H -0.269 1.269 29 C -0.182 4.182 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.430 0.570 34 H 0.131 0.869 35 H 0.081 0.919 36 H 0.108 0.892 37 H 0.090 0.910 38 H 0.124 0.876 39 H 0.145 0.855 40 H 0.150 0.850 41 H 0.140 0.860 42 H 0.106 0.894 43 H 0.285 0.715 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.763 -12.879 31.261 35.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.043 3.957 3 H 0.081 0.919 4 C -0.110 4.110 5 H 0.163 0.837 6 C 0.341 3.659 7 O -0.440 6.440 8 O -0.317 6.317 9 C -0.145 4.145 10 C -0.032 4.032 11 N -0.355 5.355 12 C 0.319 3.681 13 O -0.448 6.448 14 C -0.121 4.121 15 C -0.028 4.028 16 C -0.186 4.186 17 C -0.096 4.096 18 C -0.260 4.260 19 C 0.069 3.931 20 O -0.156 6.156 21 C -0.475 4.475 22 H 0.097 0.903 23 C -0.189 4.189 24 N -0.565 5.565 25 Si 0.793 3.207 26 H -0.185 1.185 27 H -0.191 1.191 28 H -0.193 1.193 29 C -0.201 4.201 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.292 0.708 34 H 0.150 0.850 35 H 0.100 0.900 36 H 0.126 0.874 37 H 0.109 0.891 38 H 0.142 0.858 39 H 0.163 0.837 40 H 0.168 0.832 41 H 0.158 0.842 42 H 0.124 0.876 43 H 0.094 0.906 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 10.238 -12.226 30.536 34.449 hybrid contribution -0.335 1.539 -0.288 1.601 sum 9.903 -10.687 30.248 33.574 Atomic orbital electron populations 1.22043 0.94360 1.02695 1.02423 1.21575 0.94956 0.95202 0.83945 0.91884 1.22191 1.02118 0.98484 0.88212 0.83656 1.23095 0.71738 0.86391 0.84668 1.90776 1.47145 1.20795 1.85332 1.84470 1.77601 1.48404 1.21217 1.22696 0.92729 1.04915 0.94162 1.22480 0.86663 0.98547 0.95533 1.48582 1.29296 1.49283 1.08297 1.20666 0.83562 0.81447 0.82464 1.90735 1.27281 1.44705 1.82060 1.20679 0.99900 1.03389 0.88177 1.19218 0.96014 0.93464 0.94122 1.21009 0.97316 1.02096 0.98218 1.21118 0.98943 0.95924 0.93619 1.21321 1.01434 1.00299 1.02951 1.19605 0.94419 0.88061 0.91004 1.83508 1.60117 1.44729 1.27249 1.20714 1.16095 1.19911 0.90822 0.90251 1.25280 1.00720 0.99376 0.93552 1.69728 1.42382 1.37649 1.06694 0.85216 0.78680 0.77958 0.78823 1.18526 1.19104 1.19333 1.20272 1.03134 1.02246 0.94427 0.91596 0.91915 0.92528 0.70839 0.85040 0.90006 0.87397 0.89127 0.85774 0.83685 0.83217 0.84174 0.87587 0.90572 0.86267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.61 8.66 71.98 0.62 -2.98 16 2 C 0.15 2.79 2.88 45.47 0.13 2.92 16 3 H 0.06 1.53 7.40 -2.39 -0.02 1.51 16 4 C -0.09 -0.90 2.96 -10.15 -0.03 -0.93 16 5 H 0.15 0.88 8.06 -2.39 -0.02 0.86 16 6 C 0.50 6.38 7.65 71.24 0.54 6.93 16 7 O -0.55 -11.94 16.48 21.98 0.36 -11.58 16 8 O -0.50 -3.21 13.42 -51.41 -0.69 -3.90 16 9 C -0.11 -0.46 6.41 31.78 0.20 -0.25 16 10 C 0.09 0.58 6.49 86.73 0.56 1.14 16 11 N -0.62 -10.75 3.24 -788.16 -2.56 -13.31 16 12 C 0.53 13.24 7.62 87.66 0.67 13.91 16 13 O -0.57 -20.83 13.72 -3.04 -0.04 -20.87 16 14 C -0.08 -1.65 5.02 29.10 0.15 -1.51 16 15 C -0.03 -0.88 4.37 -19.88 -0.09 -0.97 16 16 C -0.17 -5.23 9.70 22.30 0.22 -5.02 16 17 C -0.08 -2.86 10.04 22.25 0.22 -2.64 16 18 C -0.24 -11.34 9.17 22.39 0.21 -11.13 16 19 C 0.12 5.92 6.65 22.58 0.15 6.07 16 20 O -0.25 -14.33 8.59 -22.75 -0.20 -14.53 16 21 C -0.40 -24.68 9.95 67.92 0.68 -24.00 16 22 H 0.08 5.14 5.44 -2.91 -0.02 5.12 16 23 C 0.01 0.53 5.49 84.83 0.47 1.00 16 24 N -0.92 -56.92 13.96 21.61 0.30 -56.61 16 25 Si 0.97 47.38 28.62 68.60 1.96 49.35 16 26 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 27 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 28 H -0.27 -13.34 7.11 99.48 0.71 -12.63 16 29 C -0.18 -7.49 9.65 22.39 0.22 -7.27 16 30 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.06 1.76 5.99 -2.39 -0.01 1.75 16 33 H 0.43 -0.31 9.10 -74.06 -0.67 -0.98 16 34 H 0.13 -0.22 8.14 -2.38 -0.02 -0.24 16 35 H 0.08 0.42 8.04 -2.39 -0.02 0.40 16 36 H 0.11 0.13 8.14 -2.38 -0.02 0.12 16 37 H 0.09 0.43 8.14 -2.38 -0.02 0.41 16 38 H 0.12 1.94 8.08 -2.39 -0.02 1.92 16 39 H 0.15 1.63 8.08 -2.38 -0.02 1.61 16 40 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 41 H 0.14 4.21 8.06 -2.91 -0.02 4.18 16 42 H 0.11 5.45 5.64 -2.91 -0.02 5.43 16 43 H 0.28 16.05 8.31 -92.71 -0.77 15.27 16 44 H 0.12 4.64 8.06 -2.91 -0.02 4.62 16 Total: -1.00 -87.95 371.07 4.43 -83.52 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 0.37 Total: 12.67 kcal Atomic # 6 Polarization: -29.65 SS G_CDS: 4.92 Total: -24.74 kcal Atomic # 7 Polarization: -67.67 SS G_CDS: -2.25 Total: -69.92 kcal Atomic # 8 Polarization: -50.31 SS G_CDS: -0.56 Total: -50.88 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 1.96 Total: 49.35 kcal Total: -87.95 4.43 -83.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604625691.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.332 kcal (2) G-P(sol) polarization free energy of solvation -87.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds