Wall clock time and date at job start Tue Mar 31 2020 17:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 110.75433 * 2 1 4 4 C 1.55305 * 111.01984 * 236.40725 * 2 1 3 5 5 C 1.54950 * 100.94270 * 207.59933 * 4 2 1 6 6 H 1.08999 * 110.39120 * 277.48879 * 5 4 2 7 7 C 1.50700 * 110.31012 * 155.35846 * 5 4 2 8 8 O 1.21281 * 120.00122 * 247.83424 * 7 5 4 9 9 N 1.34783 * 119.99763 * 67.83683 * 7 5 4 10 10 C 1.39920 * 119.99869 * 184.62531 * 9 7 5 11 11 C 1.38870 * 120.07220 * 144.90723 * 10 9 7 12 12 C 1.38112 * 119.93245 * 180.29876 * 11 10 9 13 13 C 1.38288 * 120.06353 * 359.42465 * 12 11 10 14 14 C 1.50706 * 119.92409 * 180.27928 * 13 12 11 15 15 C 1.50700 * 109.46965 * 270.31763 * 14 13 12 16 16 H 1.08003 * 120.00049 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99920 * 180.02562 * 15 14 13 18 18 N 1.31520 * 120.00074 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00065 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47167 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47320 * 119.99987 * 19 17 15 22 22 H 1.48505 * 109.46976 * 240.00171 * 19 17 15 23 23 C 1.38284 * 120.14486 * 0.59963 * 13 12 11 24 24 C 1.38110 * 120.06480 * 359.68139 * 23 13 12 25 25 O 1.43646 * 105.13323 * 36.44477 * 5 4 2 26 26 C 1.43239 * 109.97413 * 335.57306 * 25 5 4 27 27 H 1.08993 * 109.83062 * 121.31900 * 26 25 5 28 28 C 1.50701 * 109.82772 * 242.20016 * 26 25 5 29 29 O 1.20824 * 120.00497 * 3.54585 * 28 26 25 30 30 O 1.34232 * 119.99704 * 183.54230 * 28 26 25 31 31 H 1.09006 * 109.46546 * 297.97767 * 1 2 3 32 32 H 1.09000 * 109.46735 * 57.97743 * 1 2 3 33 33 H 1.08997 * 109.47217 * 177.97736 * 1 2 3 34 34 H 1.09002 * 111.12461 * 89.68003 * 4 2 1 35 35 H 1.09008 * 111.12648 * 325.51850 * 4 2 1 36 36 H 0.96993 * 119.99653 * 4.62002 * 9 7 5 37 37 H 1.08001 * 120.03737 * 0.02562 * 11 10 9 38 38 H 1.07997 * 119.97073 * 179.70137 * 12 11 10 39 39 H 1.08993 * 109.47459 * 30.32387 * 14 13 12 40 40 H 1.09001 * 109.46936 * 150.32287 * 14 13 12 41 41 H 0.96992 * 119.99973 * 180.02562 * 18 17 15 42 42 H 1.08000 * 119.96182 * 179.69789 * 23 13 12 43 43 H 1.08005 * 120.03106 * 180.02562 * 24 23 13 44 44 H 0.96702 * 117.00076 * 179.97438 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9163 1.0193 0.0000 4 6 2.0871 -0.8021 -1.2076 5 6 3.4511 -1.2735 -0.6435 6 1 4.1975 -0.4860 -0.7469 7 6 3.9074 -2.5221 -1.3535 8 8 3.9571 -3.5760 -0.7554 9 7 4.2603 -2.4674 -2.6531 10 6 4.5909 -3.6417 -3.3383 11 6 4.2571 -3.7827 -4.6789 12 6 4.5793 -4.9456 -5.3507 13 6 5.2443 -5.9641 -4.6929 14 6 5.5999 -7.2292 -5.4308 15 6 4.4694 -8.2179 -5.3064 16 1 3.5820 -7.9563 -4.7493 17 6 4.5681 -9.4565 -5.9040 18 7 5.6489 -9.7753 -6.5821 19 14 3.1665 -10.6819 -5.7505 20 1 2.0732 -10.0847 -4.9422 21 1 2.6548 -11.0206 -7.1027 22 1 3.6576 -11.9147 -5.0840 23 6 5.5778 -5.8271 -3.3579 24 6 5.2532 -4.6690 -2.6790 25 8 3.2073 -1.5503 0.7448 26 6 2.0794 -0.7958 1.2034 27 1 1.3126 -1.4710 1.5831 28 6 2.5083 0.1542 2.2918 29 8 3.6738 0.2332 2.6002 30 8 1.5954 0.9128 2.9185 31 1 -0.3632 0.4821 0.9076 32 1 -0.3633 0.5449 -0.8713 33 1 -0.3633 -1.0270 -0.0363 34 1 2.2227 -0.1592 -2.0773 35 1 1.4456 -1.6509 -1.4450 36 1 4.2851 -1.6140 -3.1134 37 1 3.7420 -2.9856 -5.1944 38 1 4.3156 -5.0578 -6.3920 39 1 5.7689 -7.0008 -6.4830 40 1 6.5059 -7.6574 -5.0019 41 1 5.7182 -10.6465 -7.0028 42 1 6.0928 -6.6264 -2.8458 43 1 5.5142 -4.5624 -1.6364 44 1 1.9181 1.5068 3.6100 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607444086.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:24 Heat of formation + Delta-G solvation = -148.655112 kcal Electronic energy + Delta-G solvation = -27682.534791 eV Core-core repulsion = 23564.653615 eV Total energy + Delta-G solvation = -4117.881176 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.44508 -40.38476 -39.25387 -37.91984 -36.54367 -34.99139 -34.21026 -33.07305 -31.58169 -30.33110 -30.12990 -27.83933 -26.80001 -25.04161 -23.17208 -22.39947 -22.15238 -21.54856 -20.57527 -20.02724 -18.83540 -17.84180 -17.77344 -17.21544 -16.41079 -16.28741 -16.12331 -15.53095 -15.35503 -14.98007 -14.61023 -14.42335 -14.21455 -13.81988 -13.65209 -13.61002 -13.08023 -12.95718 -12.85169 -12.65431 -12.48395 -12.08153 -12.02440 -11.98601 -11.76174 -11.49325 -11.46674 -11.25179 -11.14533 -10.80190 -10.58576 -10.39180 -10.32734 -10.03937 -9.66224 -9.41440 -9.25701 -8.41061 -8.30012 -7.42706 -6.02429 -4.06125 1.68560 1.79504 2.04925 2.14814 2.55908 2.79299 3.31124 3.38725 3.40811 3.44654 3.65101 4.08606 4.18185 4.33956 4.39333 4.49224 4.58163 4.64462 4.70096 4.77440 5.00813 5.04535 5.26616 5.27822 5.31647 5.40579 5.47192 5.57527 5.64832 5.90848 5.98633 6.02003 6.08548 6.17971 6.18967 6.64158 6.76112 6.88186 7.15500 7.20533 7.42437 7.42999 7.51845 7.69814 7.86530 7.93757 8.09628 8.33987 8.99611 9.57753 11.07208 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.021255 B = 0.002120 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.997181 B =13205.328951 C =13458.254011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.108 4.108 3 H 0.094 0.906 4 C -0.142 4.142 5 C 0.063 3.937 6 H 0.103 0.897 7 C 0.509 3.491 8 O -0.495 6.495 9 N -0.663 5.663 10 C 0.101 3.899 11 C -0.141 4.141 12 C -0.109 4.109 13 C -0.040 4.040 14 C 0.047 3.953 15 C -0.510 4.510 16 H 0.058 0.942 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.895 3.105 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.283 1.283 23 C -0.109 4.109 24 C -0.116 4.116 25 O -0.317 6.317 26 C 0.092 3.908 27 H 0.127 0.873 28 C 0.465 3.535 29 O -0.495 6.495 30 O -0.514 6.514 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.405 0.595 37 H 0.114 0.886 38 H 0.123 0.877 39 H 0.029 0.971 40 H 0.029 0.971 41 H 0.261 0.739 42 H 0.122 0.878 43 H 0.128 0.872 44 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.792 26.735 12.251 30.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.127 4.127 3 H 0.113 0.887 4 C -0.180 4.180 5 C 0.002 3.998 6 H 0.121 0.879 7 C 0.294 3.706 8 O -0.367 6.367 9 N -0.310 5.310 10 C 0.009 3.991 11 C -0.161 4.161 12 C -0.128 4.128 13 C -0.041 4.041 14 C 0.010 3.990 15 C -0.548 4.548 16 H 0.076 0.924 17 C -0.144 4.144 18 N -0.534 5.534 19 Si 0.722 3.278 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.209 1.209 23 C -0.128 4.128 24 C -0.136 4.136 25 O -0.234 6.234 26 C 0.033 3.967 27 H 0.145 0.855 28 C 0.305 3.695 29 O -0.381 6.381 30 O -0.327 6.327 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.120 0.880 35 H 0.114 0.886 36 H 0.240 0.760 37 H 0.132 0.868 38 H 0.140 0.860 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.071 0.929 42 H 0.140 0.860 43 H 0.146 0.854 44 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -9.391 25.460 12.556 29.901 hybrid contribution -0.525 0.245 0.261 0.635 sum -9.916 25.705 12.817 30.387 Atomic orbital electron populations 1.21774 0.91855 1.03253 1.03304 1.22647 0.98530 0.99717 0.91796 0.88725 1.23425 0.94663 1.01302 0.98588 1.22918 0.98750 0.95527 0.82640 0.87933 1.20270 0.78054 0.90187 0.82043 1.90775 1.50350 1.30601 1.65021 1.43178 1.67796 1.09382 1.10633 1.17487 1.01793 0.87889 0.91955 1.20728 1.03112 0.98990 0.93241 1.20885 0.99270 0.92500 1.00144 1.20750 0.93162 0.96286 0.93879 1.18367 0.97347 0.88187 0.95083 1.21109 1.02348 0.98433 1.32886 0.92403 1.25018 0.95957 0.98225 0.95214 1.69966 1.27164 1.21757 1.34485 0.86485 0.82370 0.81122 0.77793 1.19646 1.20971 1.20933 1.21036 1.00656 0.96707 0.94365 1.21154 0.98323 0.93775 1.00358 1.88692 1.48034 1.63567 1.23085 1.22387 0.89609 0.92338 0.92392 0.85533 1.23830 0.83969 0.79497 0.82195 1.90767 1.19745 1.64554 1.62988 1.84495 1.43306 1.53095 1.51759 0.91057 0.91252 0.91533 0.88005 0.88552 0.76022 0.86760 0.85950 0.95274 0.95254 0.92922 0.86018 0.85377 0.72835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.56 9.15 37.16 0.34 -0.22 16 2 C -0.11 -0.57 3.10 -88.67 -0.28 -0.84 16 3 H 0.09 0.41 7.84 -51.93 -0.41 0.00 16 4 C -0.14 -0.83 6.02 -24.48 -0.15 -0.98 16 5 C 0.06 0.59 3.87 -26.85 -0.10 0.49 16 6 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 7 C 0.51 6.78 7.02 -10.98 -0.08 6.71 16 8 O -0.50 -9.11 13.99 -13.77 -0.19 -9.30 16 9 N -0.66 -7.84 5.34 -9.86 -0.05 -7.89 16 10 C 0.10 1.61 6.30 -83.70 -0.53 1.09 16 11 C -0.14 -2.20 9.97 -39.39 -0.39 -2.59 16 12 C -0.11 -2.07 9.69 -39.61 -0.38 -2.45 16 13 C -0.04 -0.88 5.07 -104.58 -0.53 -1.41 16 14 C 0.05 1.21 5.10 -29.03 -0.15 1.06 16 15 C -0.51 -14.41 9.09 -34.44 -0.31 -14.72 16 16 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 19 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 20 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 C -0.11 -2.25 9.69 -39.61 -0.38 -2.63 16 24 C -0.12 -2.17 8.70 -39.39 -0.34 -2.52 16 25 O -0.32 -3.89 9.82 -64.44 -0.63 -4.52 16 26 C 0.09 0.77 3.66 -27.16 -0.10 0.67 16 27 H 0.13 0.89 7.82 -51.93 -0.41 0.48 16 28 C 0.46 4.11 7.51 36.01 0.27 4.38 16 29 O -0.49 -6.39 17.28 -25.40 -0.44 -6.83 16 30 O -0.51 -2.72 13.42 -39.26 -0.53 -3.25 16 31 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 33 H 0.07 0.28 8.13 -51.93 -0.42 -0.14 16 34 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.10 0.66 7.94 -51.92 -0.41 0.24 16 36 H 0.40 3.03 8.82 -40.82 -0.36 2.66 16 37 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 38 H 0.12 2.21 8.06 -52.49 -0.42 1.78 16 39 H 0.03 0.78 8.09 -51.93 -0.42 0.36 16 40 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 41 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 42 H 0.12 2.47 8.06 -52.49 -0.42 2.05 16 43 H 0.13 2.44 6.23 -52.48 -0.33 2.11 16 44 H 0.41 0.59 9.10 45.56 0.41 1.01 16 LS Contribution 378.25 15.07 5.70 5.70 Total: -1.00 -37.73 378.25 -8.90 -46.63 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -5.26 Total: 0.94 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: -3.21 Total: -12.44 kcal Atomic # 7 Polarization: -34.39 SS G_CDS: 0.68 Total: -33.71 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -1.79 Total: -23.90 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -37.73 -8.90 -46.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607444086.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.027 kcal (2) G-P(sol) polarization free energy of solvation -37.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds