Wall clock time and date at job start Tue Mar 31 2020 17:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 110.75433 * 2 1 4 4 C 1.55305 * 111.01984 * 236.40725 * 2 1 3 5 5 C 1.54950 * 100.94270 * 207.59933 * 4 2 1 6 6 H 1.08999 * 110.39120 * 277.48879 * 5 4 2 7 7 C 1.50700 * 110.31012 * 155.35846 * 5 4 2 8 8 O 1.21281 * 120.00122 * 247.83424 * 7 5 4 9 9 N 1.34783 * 119.99763 * 67.83683 * 7 5 4 10 10 C 1.39920 * 119.99869 * 184.62531 * 9 7 5 11 11 C 1.38870 * 120.07220 * 144.90723 * 10 9 7 12 12 C 1.38112 * 119.93245 * 180.29876 * 11 10 9 13 13 C 1.38288 * 120.06353 * 359.42465 * 12 11 10 14 14 C 1.50706 * 119.92409 * 180.27928 * 13 12 11 15 15 C 1.50700 * 109.46965 * 270.31763 * 14 13 12 16 16 H 1.08003 * 120.00049 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99920 * 180.02562 * 15 14 13 18 18 N 1.31520 * 120.00074 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00065 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47167 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47320 * 119.99987 * 19 17 15 22 22 H 1.48505 * 109.46976 * 240.00171 * 19 17 15 23 23 C 1.38284 * 120.14486 * 0.59963 * 13 12 11 24 24 C 1.38110 * 120.06480 * 359.68139 * 23 13 12 25 25 O 1.43646 * 105.13323 * 36.44477 * 5 4 2 26 26 C 1.43239 * 109.97413 * 335.57306 * 25 5 4 27 27 H 1.08993 * 109.83062 * 121.31900 * 26 25 5 28 28 C 1.50701 * 109.82772 * 242.20016 * 26 25 5 29 29 O 1.20824 * 120.00497 * 3.54585 * 28 26 25 30 30 O 1.34232 * 119.99704 * 183.54230 * 28 26 25 31 31 H 1.09006 * 109.46546 * 297.97767 * 1 2 3 32 32 H 1.09000 * 109.46735 * 57.97743 * 1 2 3 33 33 H 1.08997 * 109.47217 * 177.97736 * 1 2 3 34 34 H 1.09002 * 111.12461 * 89.68003 * 4 2 1 35 35 H 1.09008 * 111.12648 * 325.51850 * 4 2 1 36 36 H 0.96993 * 119.99653 * 4.62002 * 9 7 5 37 37 H 1.08001 * 120.03737 * 0.02562 * 11 10 9 38 38 H 1.07997 * 119.97073 * 179.70137 * 12 11 10 39 39 H 1.08993 * 109.47459 * 30.32387 * 14 13 12 40 40 H 1.09001 * 109.46936 * 150.32287 * 14 13 12 41 41 H 0.96992 * 119.99973 * 180.02562 * 18 17 15 42 42 H 1.08000 * 119.96182 * 179.69789 * 23 13 12 43 43 H 1.08005 * 120.03106 * 180.02562 * 24 23 13 44 44 H 0.96702 * 117.00076 * 179.97438 * 30 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9163 1.0193 0.0000 4 6 2.0871 -0.8021 -1.2076 5 6 3.4511 -1.2735 -0.6435 6 1 4.1975 -0.4860 -0.7469 7 6 3.9074 -2.5221 -1.3535 8 8 3.9571 -3.5760 -0.7554 9 7 4.2603 -2.4674 -2.6531 10 6 4.5909 -3.6417 -3.3383 11 6 4.2571 -3.7827 -4.6789 12 6 4.5793 -4.9456 -5.3507 13 6 5.2443 -5.9641 -4.6929 14 6 5.5999 -7.2292 -5.4308 15 6 4.4694 -8.2179 -5.3064 16 1 3.5820 -7.9563 -4.7493 17 6 4.5681 -9.4565 -5.9040 18 7 5.6489 -9.7753 -6.5821 19 14 3.1665 -10.6819 -5.7505 20 1 2.0732 -10.0847 -4.9422 21 1 2.6548 -11.0206 -7.1027 22 1 3.6576 -11.9147 -5.0840 23 6 5.5778 -5.8271 -3.3579 24 6 5.2532 -4.6690 -2.6790 25 8 3.2073 -1.5503 0.7448 26 6 2.0794 -0.7958 1.2034 27 1 1.3126 -1.4710 1.5831 28 6 2.5083 0.1542 2.2918 29 8 3.6738 0.2332 2.6002 30 8 1.5954 0.9128 2.9185 31 1 -0.3632 0.4821 0.9076 32 1 -0.3633 0.5449 -0.8713 33 1 -0.3633 -1.0270 -0.0363 34 1 2.2227 -0.1592 -2.0773 35 1 1.4456 -1.6509 -1.4450 36 1 4.2851 -1.6140 -3.1134 37 1 3.7420 -2.9856 -5.1944 38 1 4.3156 -5.0578 -6.3920 39 1 5.7689 -7.0008 -6.4830 40 1 6.5059 -7.6574 -5.0019 41 1 5.7182 -10.6465 -7.0028 42 1 6.0928 -6.6264 -2.8458 43 1 5.5142 -4.5624 -1.6364 44 1 1.9181 1.5068 3.6100 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607444086.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:23 Heat of formation + Delta-G solvation = -174.570700 kcal Electronic energy + Delta-G solvation = -27683.658575 eV Core-core repulsion = 23564.653615 eV Total energy + Delta-G solvation = -4119.004960 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.18767 -41.37273 -40.17570 -39.17033 -37.16428 -36.33896 -35.05532 -34.73712 -32.75783 -31.78488 -31.45893 -28.60258 -28.18381 -26.07066 -24.80055 -23.83565 -22.81353 -22.33581 -21.74458 -21.15741 -19.45728 -18.89188 -18.52161 -18.48289 -18.09820 -17.15584 -16.93950 -16.81083 -16.40205 -16.22642 -15.94374 -15.70394 -15.21213 -14.69596 -14.62547 -14.49726 -14.37076 -14.23944 -14.02675 -13.67749 -13.39247 -13.32847 -13.19406 -13.16402 -12.66032 -12.63035 -12.54819 -12.46444 -12.20637 -12.00785 -11.91862 -11.79686 -11.64735 -11.53350 -11.11503 -10.96949 -10.63812 -10.59399 -9.76527 -8.91645 -8.19418 -6.33571 0.40490 0.56797 1.04251 1.37997 1.39162 1.46146 1.47196 1.53072 2.00866 2.39345 2.73875 2.98963 3.09801 3.11792 3.48902 3.62577 3.82835 3.93507 4.03251 4.09961 4.16002 4.23551 4.38563 4.41461 4.51930 4.59776 4.66246 4.71420 4.74629 4.88712 5.02557 5.12884 5.13583 5.31197 5.32886 5.40736 5.41119 5.44351 5.48746 5.58620 5.61209 5.75399 6.08076 6.11992 6.24684 6.42185 6.79124 6.91223 7.10062 7.34774 8.88684 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.021255 B = 0.002120 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.997181 B =13205.328951 C =13458.254011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.096 4.096 3 H 0.111 0.889 4 C -0.133 4.133 5 C 0.064 3.936 6 H 0.129 0.871 7 C 0.507 3.493 8 O -0.553 6.553 9 N -0.644 5.644 10 C 0.117 3.883 11 C -0.119 4.119 12 C -0.113 4.113 13 C -0.073 4.073 14 C 0.056 3.944 15 C -0.527 4.527 16 H 0.051 0.949 17 C 0.004 3.996 18 N -0.929 5.929 19 Si 0.965 3.035 20 H -0.268 1.268 21 H -0.272 1.272 22 H -0.278 1.278 23 C -0.124 4.124 24 C -0.127 4.127 25 O -0.360 6.360 26 C 0.082 3.918 27 H 0.133 0.867 28 C 0.474 3.526 29 O -0.544 6.544 30 O -0.499 6.499 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.060 0.940 34 H 0.142 0.858 35 H 0.087 0.913 36 H 0.432 0.568 37 H 0.168 0.832 38 H 0.130 0.870 39 H 0.011 0.989 40 H -0.001 1.001 41 H 0.266 0.734 42 H 0.106 0.894 43 H 0.120 0.880 44 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.654 30.064 11.836 34.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.114 4.114 3 H 0.129 0.871 4 C -0.171 4.171 5 C 0.004 3.996 6 H 0.146 0.854 7 C 0.295 3.705 8 O -0.430 6.430 9 N -0.292 5.292 10 C 0.024 3.976 11 C -0.138 4.138 12 C -0.132 4.132 13 C -0.074 4.074 14 C 0.020 3.980 15 C -0.565 4.565 16 H 0.069 0.931 17 C -0.194 4.194 18 N -0.569 5.569 19 Si 0.789 3.211 20 H -0.192 1.192 21 H -0.197 1.197 22 H -0.204 1.204 23 C -0.143 4.143 24 C -0.147 4.147 25 O -0.278 6.278 26 C 0.023 3.977 27 H 0.150 0.850 28 C 0.317 3.683 29 O -0.434 6.434 30 O -0.313 6.313 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.079 0.921 34 H 0.160 0.840 35 H 0.106 0.894 36 H 0.272 0.728 37 H 0.185 0.815 38 H 0.148 0.852 39 H 0.029 0.971 40 H 0.017 0.983 41 H 0.075 0.925 42 H 0.124 0.876 43 H 0.138 0.862 44 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -12.282 28.868 12.135 33.637 hybrid contribution 0.345 -0.668 0.503 0.905 sum -11.937 28.200 12.638 33.127 Atomic orbital electron populations 1.21779 0.90638 1.03242 1.04259 1.22670 0.99305 0.99793 0.89665 0.87098 1.23513 0.91938 1.01647 0.99990 1.23095 1.01451 0.93446 0.81645 0.85369 1.21125 0.76583 0.90835 0.81956 1.90761 1.52749 1.33152 1.66300 1.43035 1.66677 1.09199 1.10321 1.17561 0.99437 0.88369 0.92270 1.21069 1.01361 0.98742 0.92669 1.21020 0.98691 0.92863 1.00631 1.20438 0.96551 0.96043 0.94346 1.18103 0.95624 0.90048 0.94273 1.21397 1.02747 0.99517 1.32806 0.93073 1.25921 0.98626 1.00182 0.94718 1.70080 1.29086 1.22501 1.35248 0.85403 0.79039 0.78398 0.78260 1.19190 1.19679 1.20379 1.20919 1.01635 0.97497 0.94240 1.21123 0.99344 0.94207 1.00048 1.88646 1.49548 1.64992 1.24591 1.22673 0.88739 0.92688 0.93649 0.84973 1.23940 0.83396 0.79154 0.81853 1.90753 1.21751 1.66271 1.64587 1.84454 1.42120 1.52790 1.51976 0.90720 0.89627 0.92120 0.84033 0.89433 0.72832 0.81491 0.85224 0.97054 0.98254 0.92546 0.87613 0.86196 0.70706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.59 9.15 71.98 0.66 0.07 16 2 C -0.10 -0.66 3.10 -9.53 -0.03 -0.69 16 3 H 0.11 0.46 7.84 -2.39 -0.02 0.44 16 4 C -0.13 -1.02 6.02 32.05 0.19 -0.83 16 5 C 0.06 1.05 3.87 30.51 0.12 1.17 16 6 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 7 C 0.51 12.68 7.02 87.66 0.62 13.30 16 8 O -0.55 -20.59 13.99 15.44 0.22 -20.38 16 9 N -0.64 -13.16 5.34 -303.51 -1.62 -14.78 16 10 C 0.12 3.51 6.30 38.15 0.24 3.75 16 11 C -0.12 -3.32 9.97 22.39 0.22 -3.10 16 12 C -0.11 -4.20 9.69 22.25 0.22 -3.98 16 13 C -0.07 -3.33 5.07 -19.84 -0.10 -3.43 16 14 C 0.06 3.09 5.10 29.10 0.15 3.24 16 15 C -0.53 -30.91 9.09 25.60 0.23 -30.68 16 16 H 0.05 3.00 7.74 -2.91 -0.02 2.97 16 17 C 0.00 0.21 5.46 84.65 0.46 0.67 16 18 N -0.93 -56.77 13.29 21.45 0.28 -56.48 16 19 Si 0.96 45.36 29.54 68.60 2.03 47.38 16 20 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 21 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 22 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 23 C -0.12 -5.40 9.69 22.25 0.22 -5.19 16 24 C -0.13 -4.85 8.70 22.39 0.19 -4.65 16 25 O -0.36 -8.58 9.82 -121.05 -1.19 -9.77 16 26 C 0.08 1.22 3.66 30.32 0.11 1.33 16 27 H 0.13 1.72 7.82 -2.39 -0.02 1.71 16 28 C 0.47 7.73 7.51 71.24 0.54 8.26 16 29 O -0.54 -13.87 17.28 28.33 0.49 -13.38 16 30 O -0.50 -4.13 13.42 -51.44 -0.69 -4.82 16 31 H 0.07 0.28 8.14 -2.38 -0.02 0.26 16 32 H 0.08 0.12 8.14 -2.39 -0.02 0.10 16 33 H 0.06 0.34 8.13 -2.39 -0.02 0.32 16 34 H 0.14 -0.01 8.14 -2.39 -0.02 -0.03 16 35 H 0.09 0.89 7.94 -2.38 -0.02 0.87 16 36 H 0.43 4.26 8.82 -92.71 -0.82 3.44 16 37 H 0.17 2.97 8.06 -2.91 -0.02 2.95 16 38 H 0.13 4.54 8.06 -2.91 -0.02 4.52 16 39 H 0.01 0.63 8.09 -2.39 -0.02 0.62 16 40 H 0.00 -0.05 8.08 -2.39 -0.02 -0.07 16 41 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 42 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 43 H 0.12 4.77 6.23 -2.91 -0.02 4.75 16 44 H 0.43 0.26 9.10 -74.06 -0.67 -0.41 16 Total: -1.00 -88.23 378.25 3.11 -85.12 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -0.44 Total: 7.85 kcal Atomic # 6 Polarization: -24.78 SS G_CDS: 4.03 Total: -20.74 kcal Atomic # 7 Polarization: -69.92 SS G_CDS: -1.33 Total: -71.26 kcal Atomic # 8 Polarization: -47.17 SS G_CDS: -1.17 Total: -48.35 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Total: -88.23 3.11 -85.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607444086.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.451 kcal (2) G-P(sol) polarization free energy of solvation -88.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds