Wall clock time and date at job start Tue Mar 31 2020 18:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47284 * 2 1 4 4 C 1.53000 * 109.47375 * 239.99474 * 2 1 3 5 5 N 1.46501 * 109.47189 * 60.29695 * 4 2 1 6 6 C 1.46503 * 119.99592 * 66.72406 * 5 4 2 7 7 C 1.52994 * 117.50117 * 2.84551 * 6 5 4 8 8 C 1.52997 * 60.00310 * 252.51105 * 7 6 5 9 9 S 1.65593 * 119.99971 * 246.72771 * 5 4 2 10 10 O 1.42105 * 104.27360 * 212.29372 * 9 5 4 11 11 O 1.42102 * 104.27623 * 340.14854 * 9 5 4 12 12 C 1.81401 * 104.45418 * 96.22081 * 9 5 4 13 13 C 1.52996 * 109.46915 * 174.19165 * 12 9 5 14 14 C 1.52992 * 109.47508 * 299.99854 * 13 12 9 15 15 C 1.52994 * 109.47294 * 60.00463 * 13 12 9 16 16 C 1.50707 * 109.46816 * 179.97438 * 13 12 9 17 17 H 1.07997 * 119.99874 * 0.02562 * 16 13 12 18 18 C 1.37877 * 119.99991 * 179.97438 * 16 13 12 19 19 N 1.31514 * 119.99984 * 0.02562 * 18 16 13 20 20 Si 1.86798 * 119.99765 * 180.02562 * 18 16 13 21 21 H 1.48501 * 109.47383 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.47151 * 120.00286 * 20 18 16 23 23 H 1.48501 * 109.47145 * 239.99908 * 20 18 16 24 24 C 1.50699 * 109.46924 * 119.99434 * 2 1 3 25 25 O 1.20824 * 120.00374 * 120.00404 * 24 2 1 26 26 O 1.34238 * 119.99956 * 300.00105 * 24 2 1 27 27 H 1.08994 * 109.47212 * 177.29114 * 1 2 3 28 28 H 1.08996 * 109.47205 * 297.29705 * 1 2 3 29 29 H 1.08999 * 109.46641 * 57.28820 * 1 2 3 30 30 H 1.09003 * 109.46737 * 180.29990 * 4 2 1 31 31 H 1.08999 * 109.46638 * 300.29902 * 4 2 1 32 32 H 1.08993 * 115.54478 * 148.55959 * 6 5 4 33 33 H 1.08998 * 117.49857 * 0.02562 * 7 6 5 34 34 H 1.09003 * 117.49778 * 145.01760 * 7 6 5 35 35 H 1.08995 * 117.50125 * 252.51157 * 8 7 6 36 36 H 1.09004 * 117.51354 * 107.47888 * 8 7 6 37 37 H 1.09001 * 109.46805 * 294.19732 * 12 9 5 38 38 H 1.09003 * 109.46681 * 54.19036 * 12 9 5 39 39 H 1.09003 * 109.47272 * 60.00346 * 14 13 12 40 40 H 1.09003 * 109.47180 * 180.02562 * 14 13 12 41 41 H 1.09001 * 109.47369 * 300.00279 * 14 13 12 42 42 H 1.09010 * 109.47260 * 59.99155 * 15 13 12 43 43 H 1.08996 * 109.47662 * 179.97438 * 15 13 12 44 44 H 1.09004 * 109.46973 * 299.99948 * 15 13 12 45 45 H 0.96996 * 120.00019 * 179.97438 * 19 18 16 46 46 H 0.96700 * 116.99630 * 179.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2492 5 7 1.5577 -0.0268 -2.4454 6 6 2.0353 1.3242 -2.7506 7 6 3.0869 1.9291 -1.8185 8 6 1.6472 2.4457 -1.7848 9 16 0.4725 -0.7686 -3.4525 10 8 0.7964 -0.2716 -4.7438 11 8 0.5986 -2.1505 -3.1465 12 6 -1.1436 -0.1428 -2.9165 13 6 -2.2279 -0.6476 -3.8707 14 6 -1.9327 -0.1502 -5.2871 15 6 -2.2445 -2.1774 -3.8604 16 6 -3.5706 -0.1282 -3.4250 17 1 -3.6432 0.4994 -2.5491 18 6 -4.7062 -0.4535 -4.1361 19 7 -4.6177 -1.2174 -5.2030 20 14 -6.3703 0.1909 -3.5840 21 1 -6.1999 1.0224 -2.3655 22 1 -6.9656 1.0156 -4.6661 23 1 -7.2685 -0.9525 -3.2821 24 6 2.0323 -0.7103 1.2305 25 8 2.7270 -1.6926 1.1199 26 8 1.7080 -0.2515 2.4497 27 1 -0.3633 -1.0264 -0.0486 28 1 -0.3633 0.4713 0.9132 29 1 -0.3632 0.5554 -0.8647 30 1 3.1301 -0.7260 -1.2464 31 1 1.6724 -1.7474 -1.2517 32 1 2.0990 1.5720 -3.8101 33 1 3.4238 1.3218 -0.9784 34 1 3.8431 2.5750 -2.2647 35 1 1.4561 3.4314 -2.2089 36 1 1.0363 2.1783 -0.9226 37 1 -1.3539 -0.4971 -1.9074 38 1 -1.1318 0.9471 -2.9238 39 1 -0.9616 -0.5263 -5.6092 40 1 -2.7055 -0.5095 -5.9667 41 1 -1.9209 0.9397 -5.2944 42 1 -2.4548 -2.5317 -2.8511 43 1 -3.0172 -2.5370 -4.5397 44 1 -1.2733 -2.5534 -4.1824 45 1 -5.4166 -1.4465 -5.7030 46 1 2.0534 -0.7407 3.2090 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609741667.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:47 Heat of formation + Delta-G solvation = -150.393077 kcal Electronic energy + Delta-G solvation = -29375.303741 eV Core-core repulsion = 25392.791152 eV Total energy + Delta-G solvation = -3982.512589 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 333.149 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.57587 -39.64917 -38.28527 -38.12609 -37.13309 -36.94775 -35.40228 -33.67712 -33.03796 -28.91632 -27.69781 -27.27757 -27.21758 -25.45916 -23.21956 -22.68122 -21.48383 -21.18763 -20.28663 -19.15006 -18.80180 -18.00196 -17.43699 -17.38001 -17.01191 -16.79188 -16.57660 -16.09911 -15.75162 -15.42831 -14.99284 -14.68243 -14.65050 -14.41522 -14.04658 -13.74730 -13.61306 -13.39141 -13.28254 -13.05531 -13.00520 -12.91482 -12.82610 -12.69502 -12.54354 -12.50007 -12.27892 -12.22557 -12.09850 -12.00051 -11.85795 -11.77868 -11.54744 -11.51496 -11.31262 -11.21616 -10.59811 -10.40004 -9.77231 -8.00756 -6.19016 -0.70942 1.15898 1.44821 1.48284 1.56779 1.57656 2.14779 2.46141 2.81777 2.90324 3.16803 3.23155 3.49599 3.63284 3.81335 3.91049 4.02750 4.07835 4.09954 4.18838 4.22173 4.41033 4.57653 4.59199 4.67545 4.76359 4.83060 4.83325 4.86255 4.88141 4.99023 5.10008 5.13931 5.20904 5.25600 5.32391 5.40048 5.50142 5.57754 5.63604 5.67366 5.97395 6.13126 6.35615 6.86249 6.97807 7.49423 8.99452 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014215 B = 0.004339 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.328849 B = 6451.888524 C = 7088.318427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.108 4.108 3 H 0.150 0.850 4 C 0.123 3.877 5 N -0.965 5.965 6 C 0.042 3.958 7 C -0.163 4.163 8 C -0.195 4.195 9 S 2.602 3.398 10 O -0.983 6.983 11 O -0.991 6.991 12 C -0.587 4.587 13 C 0.072 3.928 14 C -0.164 4.164 15 C -0.158 4.158 16 C -0.510 4.510 17 H 0.068 0.932 18 C 0.017 3.983 19 N -0.910 5.910 20 Si 0.953 3.047 21 H -0.262 1.262 22 H -0.285 1.285 23 H -0.287 1.287 24 C 0.494 3.506 25 O -0.547 6.547 26 O -0.505 6.505 27 H 0.056 0.944 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.134 0.866 33 H 0.106 0.894 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.113 0.887 37 H 0.141 0.859 38 H 0.144 0.856 39 H 0.038 0.962 40 H 0.068 0.932 41 H 0.041 0.959 42 H 0.041 0.959 43 H 0.073 0.927 44 H 0.019 0.981 45 H 0.260 0.740 46 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.650 8.753 13.661 21.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.129 4.129 3 H 0.167 0.833 4 C -0.003 4.003 5 N -0.800 5.800 6 C -0.064 4.064 7 C -0.201 4.201 8 C -0.233 4.233 9 S 2.703 3.297 10 O -0.973 6.973 11 O -0.981 6.981 12 C -0.720 4.720 13 C 0.070 3.930 14 C -0.221 4.221 15 C -0.216 4.216 16 C -0.549 4.549 17 H 0.086 0.914 18 C -0.182 4.182 19 N -0.549 5.549 20 Si 0.780 3.220 21 H -0.186 1.186 22 H -0.211 1.211 23 H -0.213 1.213 24 C 0.337 3.663 25 O -0.438 6.438 26 O -0.318 6.318 27 H 0.075 0.925 28 H 0.117 0.883 29 H 0.102 0.898 30 H 0.115 0.885 31 H 0.106 0.894 32 H 0.152 0.848 33 H 0.124 0.876 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.131 0.869 37 H 0.159 0.841 38 H 0.162 0.838 39 H 0.057 0.943 40 H 0.086 0.914 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.091 0.909 44 H 0.038 0.962 45 H 0.070 0.930 46 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 13.848 7.971 12.460 20.262 hybrid contribution -1.188 -0.221 0.704 1.399 sum 12.660 7.750 13.164 19.840 Atomic orbital electron populations 1.22301 0.91604 1.03561 1.05790 1.21790 0.99136 1.03116 0.88814 0.83319 1.21274 1.01336 0.95818 0.81870 1.56949 1.58669 1.25958 1.38378 1.21809 1.06256 0.80125 0.98233 1.23436 0.92945 1.02604 1.01152 1.23866 0.98233 0.98988 1.02260 1.05171 0.76823 0.73856 0.73872 1.93478 1.83381 1.81530 1.38904 1.93500 1.86674 1.33020 1.84955 1.30710 1.17127 1.13017 1.11113 1.17905 0.92715 0.91906 0.90463 1.22269 1.00106 0.99942 0.99830 1.22180 0.99751 0.98215 1.01442 1.21306 0.90797 1.30911 1.11911 0.91423 1.25671 1.02252 0.95275 0.95009 1.69957 1.29368 1.37261 1.18286 0.85577 0.80045 0.78000 0.78412 1.18632 1.21138 1.21280 1.23314 0.75910 0.81568 0.85487 1.90747 1.37707 1.27452 1.87845 1.84483 1.71867 1.58840 1.16658 0.92477 0.88333 0.89795 0.88502 0.89361 0.84800 0.87576 0.85869 0.86123 0.86863 0.84132 0.83753 0.94350 0.91362 0.93939 0.93945 0.90853 0.96170 0.93046 0.70914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.42 7.33 71.98 0.53 -2.89 16 2 C -0.11 -1.98 2.05 -11.54 -0.02 -2.01 16 3 H 0.15 1.96 3.93 -2.39 -0.01 1.95 16 4 C 0.12 2.97 3.86 86.38 0.33 3.31 16 5 N -0.97 -25.53 2.47 -493.39 -1.22 -26.75 16 6 C 0.04 0.87 6.33 44.99 0.28 1.16 16 7 C -0.16 -2.19 9.33 30.59 0.29 -1.91 16 8 C -0.19 -2.78 9.65 30.59 0.30 -2.48 16 9 S 2.60 95.69 4.43 -56.49 -0.25 95.44 16 10 O -0.98 -41.03 14.16 -127.65 -1.81 -42.84 16 11 O -0.99 -42.12 14.43 -127.65 -1.84 -43.97 16 12 C -0.59 -21.41 3.53 71.98 0.25 -21.15 16 13 C 0.07 3.40 0.52 -52.93 -0.03 3.38 16 14 C -0.16 -8.03 7.77 71.98 0.56 -7.47 16 15 C -0.16 -7.84 7.80 71.98 0.56 -7.28 16 16 C -0.51 -25.65 8.01 25.60 0.21 -25.44 16 17 H 0.07 3.22 7.74 -2.91 -0.02 3.20 16 18 C 0.02 0.89 5.15 84.65 0.44 1.32 16 19 N -0.91 -49.92 9.35 21.45 0.20 -49.72 16 20 Si 0.95 41.27 29.54 68.60 2.03 43.30 16 21 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 22 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 23 H -0.29 -12.44 7.11 99.48 0.71 -11.74 16 24 C 0.49 9.51 7.63 71.24 0.54 10.05 16 25 O -0.55 -14.30 16.74 21.97 0.37 -13.94 16 26 O -0.51 -6.51 13.28 -51.49 -0.68 -7.19 16 27 H 0.06 1.27 7.88 -2.39 -0.02 1.26 16 28 H 0.10 1.51 8.05 -2.39 -0.02 1.49 16 29 H 0.08 1.68 4.31 -2.39 -0.01 1.67 16 30 H 0.10 2.11 7.39 -2.39 -0.02 2.09 16 31 H 0.09 2.60 6.58 -2.39 -0.02 2.58 16 32 H 0.13 3.05 7.46 -2.39 -0.02 3.03 16 33 H 0.11 1.31 5.51 -2.39 -0.01 1.30 16 34 H 0.12 1.23 8.14 -2.39 -0.02 1.22 16 35 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.11 1.46 4.89 -2.38 -0.01 1.45 16 37 H 0.14 4.59 5.73 -2.39 -0.01 4.58 16 38 H 0.14 4.51 8.09 -2.39 -0.02 4.49 16 39 H 0.04 1.83 5.19 -2.39 -0.01 1.82 16 40 H 0.07 3.68 6.07 -2.39 -0.01 3.67 16 41 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.04 1.99 8.14 -2.38 -0.02 1.97 16 43 H 0.07 3.98 6.07 -2.39 -0.01 3.96 16 44 H 0.02 0.95 5.74 -2.39 -0.01 0.94 16 45 H 0.26 13.69 8.31 -92.71 -0.77 12.92 16 46 H 0.43 2.04 9.10 -74.06 -0.67 1.37 16 Total: -1.00 -71.64 355.30 1.38 -70.26 By element: Atomic # 1 Polarization: 26.47 SS G_CDS: 0.35 Total: 26.82 kcal Atomic # 6 Polarization: -55.66 SS G_CDS: 4.23 Total: -51.42 kcal Atomic # 7 Polarization: -75.45 SS G_CDS: -1.02 Total: -76.47 kcal Atomic # 8 Polarization: -103.97 SS G_CDS: -3.97 Total: -107.93 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Atomic # 16 Polarization: 95.69 SS G_CDS: -0.25 Total: 95.44 kcal Total: -71.64 1.38 -70.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609741667.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.135 kcal (2) G-P(sol) polarization free energy of solvation -71.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds