Wall clock time and date at job start Tue Mar 31 2020 17:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09008 * 110.41344 * 2 1 4 4 C 1.54913 * 110.37068 * 237.70459 * 2 1 3 5 5 H 1.09001 * 111.03437 * 322.24019 * 4 2 1 6 6 C 1.50695 * 111.00051 * 86.07694 * 4 2 1 7 7 O 1.20826 * 120.00729 * 353.65216 * 6 4 2 8 8 O 1.34234 * 119.99531 * 173.65081 * 6 4 2 9 9 C 1.55153 * 101.58076 * 204.14977 * 4 2 1 10 10 C 1.54328 * 102.94239 * 35.50305 * 9 4 2 11 11 N 1.47015 * 107.27375 * 337.80291 * 10 9 4 12 12 C 1.34770 * 125.65330 * 178.96031 * 11 10 9 13 13 O 1.21276 * 120.00651 * 179.97438 * 12 11 10 14 14 C 1.50703 * 119.99773 * 359.97438 * 12 11 10 15 15 C 1.50699 * 109.47252 * 179.97438 * 14 12 11 16 16 C 1.38303 * 119.93389 * 269.73050 * 15 14 12 17 17 C 1.38096 * 120.06607 * 179.72345 * 16 15 14 18 18 C 1.38881 * 119.93388 * 0.54711 * 17 16 15 19 19 O 1.35749 * 120.06602 * 179.74754 * 18 17 16 20 20 C 1.34834 * 116.99322 * 174.44422 * 19 18 17 21 21 H 1.07997 * 120.00139 * 5.05116 * 20 19 18 22 22 C 1.38655 * 119.99689 * 185.05623 * 20 19 18 23 23 N 1.31556 * 119.99822 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99919 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47271 * 359.97438 * 24 22 20 26 26 H 1.48507 * 109.46986 * 119.99907 * 24 22 20 27 27 H 1.48507 * 109.46954 * 239.99659 * 24 22 20 28 28 C 1.38876 * 119.86072 * 359.72641 * 18 17 16 29 29 C 1.38098 * 119.92926 * 359.97438 * 28 18 17 30 30 H 1.08998 * 109.46882 * 182.29381 * 1 2 3 31 31 H 1.09001 * 109.47434 * 302.29344 * 1 2 3 32 32 H 1.09003 * 109.47290 * 62.30032 * 1 2 3 33 33 H 0.96702 * 117.00193 * 179.97438 * 8 6 4 34 34 H 1.09004 * 110.71888 * 153.86054 * 9 4 2 35 35 H 1.09001 * 110.72552 * 276.96179 * 9 4 2 36 36 H 1.09007 * 109.88180 * 97.22187 * 10 9 4 37 37 H 1.08998 * 109.87791 * 218.22949 * 10 9 4 38 38 H 1.08999 * 109.47473 * 300.00017 * 14 12 11 39 39 H 1.09007 * 109.47029 * 59.99906 * 14 12 11 40 40 H 1.07998 * 119.96325 * 359.97438 * 16 15 14 41 41 H 1.08008 * 120.03204 * 180.26985 * 17 16 15 42 42 H 0.97009 * 119.99717 * 179.97438 * 23 22 20 43 43 H 1.07994 * 120.03863 * 179.97438 * 28 18 17 44 44 H 1.08008 * 119.96705 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9101 1.0216 0.0000 4 6 2.0692 -0.7759 -1.2276 5 1 1.4513 -1.6481 -1.4414 6 6 2.1669 0.1221 -2.4338 7 8 1.7361 1.2499 -2.3840 8 8 2.7327 -0.3309 -3.5636 9 6 3.4778 -1.1996 -0.7341 10 6 3.2493 -1.4767 0.7668 11 7 2.0431 -0.7384 1.1684 12 6 1.4970 -0.7365 2.4005 13 8 0.4963 -0.0872 2.6193 14 6 2.1298 -1.5413 3.5064 15 6 1.3319 -1.3687 4.7731 16 6 1.6475 -0.3505 5.6542 17 6 0.9145 -0.1864 6.8130 18 6 -0.1332 -1.0520 7.0988 19 8 -0.8522 -0.8963 8.2396 20 6 -1.9257 -1.6962 8.4005 21 1 -2.1323 -2.4740 7.6803 22 6 -2.7644 -1.5200 9.4905 23 7 -2.5124 -0.5727 10.3679 24 14 -4.2520 -2.6277 9.7130 25 1 -4.3124 -3.6055 8.5971 26 1 -4.1394 -3.3545 11.0032 27 1 -5.4871 -1.8031 9.7155 28 6 -0.4440 -2.0770 6.2148 29 6 0.2888 -2.2321 5.0546 30 1 -0.3633 -1.0268 0.0411 31 1 -0.3634 0.5490 0.8687 32 1 -0.3634 0.4777 -0.9099 33 1 2.7724 0.2815 -4.3109 34 1 3.8105 -2.1023 -1.2465 35 1 4.1952 -0.3912 -0.8749 36 1 3.1013 -2.5445 0.9283 37 1 4.1076 -1.1303 1.3425 38 1 2.1446 -2.5946 3.2265 39 1 3.1502 -1.1944 3.6700 40 1 2.4654 0.3194 5.4338 41 1 1.1587 0.6117 7.4986 42 1 -3.0994 -0.4492 11.1303 43 1 -1.2579 -2.7520 6.4343 44 1 0.0473 -3.0288 4.3664 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609837137.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:56 Heat of formation + Delta-G solvation = -123.880868 kcal Electronic energy + Delta-G solvation = -27846.269388 eV Core-core repulsion = 23729.462504 eV Total energy + Delta-G solvation = -4116.806884 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.22212 -39.99255 -38.92080 -37.62399 -36.57128 -36.32756 -32.83468 -32.28626 -31.76623 -30.89728 -30.09984 -27.28853 -26.43966 -25.12213 -23.65347 -23.02173 -21.92519 -21.20510 -20.39167 -19.18073 -18.36283 -17.93823 -17.68707 -16.96858 -16.82880 -16.01607 -15.69825 -15.42338 -14.73972 -14.54897 -14.39496 -14.26989 -14.07716 -13.88984 -13.53763 -13.50173 -13.18008 -13.05579 -12.66818 -12.61906 -12.43365 -12.22295 -12.02562 -11.86075 -11.80713 -11.51509 -11.46688 -11.24645 -11.17156 -10.94287 -10.80688 -10.70652 -10.55950 -10.38589 -9.49825 -9.27640 -8.81607 -8.78220 -8.10117 -7.11708 -6.40617 -3.98995 1.69659 2.20049 2.30178 2.42768 2.75137 3.00143 3.15472 3.17304 3.22461 3.76038 3.94945 4.00621 4.34821 4.53896 4.66432 4.71891 4.84114 4.96010 5.08716 5.12735 5.18246 5.21494 5.23520 5.33301 5.35602 5.39946 5.49482 5.58020 5.68693 5.76889 5.87959 5.89576 5.99172 6.10626 6.26673 6.38448 6.46757 6.75055 6.96260 7.10420 7.28813 7.37518 7.41645 7.41932 7.49997 7.88816 8.04900 8.28305 9.05288 9.76201 10.77636 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.025727 B = 0.002114 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.083061 B =13239.353851 C =13631.752513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.154 3.846 3 H 0.086 0.914 4 C -0.099 4.099 5 H 0.125 0.875 6 C 0.491 3.509 7 O -0.505 6.505 8 O -0.515 6.515 9 C -0.118 4.118 10 C 0.101 3.899 11 N -0.628 5.628 12 C 0.529 3.471 13 O -0.509 6.509 14 C -0.074 4.074 15 C -0.171 4.171 16 C -0.059 4.059 17 C -0.191 4.191 18 C 0.157 3.843 19 O -0.179 6.179 20 C -0.390 4.390 21 H 0.092 0.908 22 C 0.038 3.962 23 N -0.863 5.863 24 Si 0.941 3.059 25 H -0.267 1.267 26 H -0.276 1.276 27 H -0.276 1.276 28 C -0.232 4.232 29 C -0.056 4.056 30 H 0.055 0.945 31 H 0.092 0.908 32 H 0.061 0.939 33 H 0.412 0.588 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.108 0.892 41 H 0.116 0.884 42 H 0.269 0.731 43 H 0.126 0.874 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.081 -4.204 -25.659 29.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.051 3.949 3 H 0.104 0.896 4 C -0.119 4.119 5 H 0.143 0.857 6 C 0.333 3.667 7 O -0.392 6.392 8 O -0.327 6.327 9 C -0.155 4.155 10 C -0.023 4.023 11 N -0.366 5.366 12 C 0.318 3.682 13 O -0.382 6.382 14 C -0.113 4.113 15 C -0.172 4.172 16 C -0.077 4.077 17 C -0.210 4.210 18 C 0.103 3.897 19 O -0.082 6.082 20 C -0.466 4.466 21 H 0.110 0.890 22 C -0.166 4.166 23 N -0.498 5.498 24 Si 0.766 3.234 25 H -0.191 1.191 26 H -0.202 1.202 27 H -0.202 1.202 28 C -0.252 4.252 29 C -0.074 4.074 30 H 0.075 0.925 31 H 0.111 0.889 32 H 0.080 0.920 33 H 0.271 0.729 34 H 0.115 0.885 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.126 0.874 41 H 0.134 0.866 42 H 0.079 0.921 43 H 0.144 0.856 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 13.260 -3.565 -24.649 28.215 hybrid contribution -0.680 -0.209 -0.619 0.943 sum 12.580 -3.774 -25.268 28.477 Atomic orbital electron populations 1.22153 0.92937 1.02923 1.04050 1.21618 0.96001 0.95251 0.82033 0.89607 1.22274 1.00429 0.98893 0.90265 0.85717 1.22975 0.73488 0.86539 0.83734 1.90773 1.44427 1.20541 1.83453 1.84520 1.74429 1.50020 1.23706 1.22631 0.94497 1.03431 0.94987 1.22024 0.88377 0.97324 0.94551 1.48693 1.28557 1.49879 1.09489 1.20776 0.84163 0.81976 0.81284 1.90716 1.24497 1.42119 1.80904 1.20395 0.99419 0.99995 0.91530 1.18631 1.01353 1.01008 0.96241 1.20394 0.98076 0.95979 0.93276 1.20155 0.99102 1.02109 0.99679 1.19382 0.91339 0.92509 0.86454 1.83979 1.36801 1.55820 1.31612 1.21375 1.01729 1.12989 1.10518 0.89035 1.25292 0.98701 0.97468 0.95163 1.70055 1.37484 1.30305 1.11994 0.85648 0.80004 0.79126 0.78640 1.19120 1.20186 1.20162 1.21100 1.04571 1.02398 0.97089 1.20494 0.93873 0.97407 0.95619 0.92543 0.88884 0.91974 0.72889 0.88467 0.89921 0.90616 0.90587 0.89068 0.89049 0.87420 0.86557 0.92128 0.85603 0.87880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 8.59 37.15 0.32 -1.63 16 2 C 0.15 1.59 2.83 -66.41 -0.19 1.40 16 3 H 0.09 1.00 7.51 -51.92 -0.39 0.61 16 4 C -0.10 -0.67 2.96 -89.63 -0.27 -0.94 16 5 H 0.13 0.71 8.06 -51.93 -0.42 0.29 16 6 C 0.49 3.73 7.63 36.00 0.27 4.00 16 7 O -0.50 -5.60 16.39 -18.75 -0.31 -5.90 16 8 O -0.51 -2.50 13.41 -39.27 -0.53 -3.02 16 9 C -0.12 -0.54 6.40 -24.90 -0.16 -0.70 16 10 C 0.10 0.60 6.49 -3.07 -0.02 0.58 16 11 N -0.63 -6.50 3.24 -163.04 -0.53 -7.03 16 12 C 0.53 7.38 7.62 -10.99 -0.08 7.30 16 13 O -0.51 -9.49 13.75 5.56 0.08 -9.41 16 14 C -0.07 -0.92 5.02 -29.03 -0.15 -1.07 16 15 C -0.17 -2.99 4.38 -104.57 -0.46 -3.44 16 16 C -0.06 -1.10 9.69 -39.61 -0.38 -1.48 16 17 C -0.19 -4.23 9.99 -39.40 -0.39 -4.62 16 18 C 0.16 3.94 6.65 -39.11 -0.26 3.68 16 19 O -0.18 -5.25 9.76 0.04 0.00 -5.25 16 20 C -0.39 -11.17 9.49 30.89 0.29 -10.88 16 21 H 0.09 2.44 5.20 -52.49 -0.27 2.17 16 22 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 23 N -0.86 -25.83 13.67 55.48 0.76 -25.07 16 24 Si 0.94 20.99 29.55 -169.99 -5.02 15.97 16 25 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 26 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 27 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 28 C -0.23 -5.25 9.17 -39.40 -0.36 -5.61 16 29 C -0.06 -1.06 9.69 -39.61 -0.38 -1.44 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.09 1.41 6.09 -51.93 -0.32 1.09 16 32 H 0.06 0.69 7.97 -51.93 -0.41 0.27 16 33 H 0.41 0.43 9.10 45.56 0.41 0.85 16 34 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.08 0.37 8.03 -51.93 -0.42 -0.05 16 36 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.09 0.92 8.08 -51.93 -0.42 0.50 16 39 H 0.09 0.92 8.08 -51.92 -0.42 0.50 16 40 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 41 H 0.12 2.48 8.06 -52.48 -0.42 2.06 16 42 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.13 2.84 5.64 -52.49 -0.30 2.55 16 44 H 0.10 1.67 8.06 -52.48 -0.42 1.25 16 LS Contribution 372.03 15.07 5.61 5.61 Total: -1.00 -36.93 372.03 -7.30 -44.23 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -5.04 Total: 3.77 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: -2.31 Total: -13.89 kcal Atomic # 7 Polarization: -32.32 SS G_CDS: 0.23 Total: -32.09 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: -0.76 Total: -23.58 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.93 -7.30 -44.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609837137.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.651 kcal (2) G-P(sol) polarization free energy of solvation -36.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds