Wall clock time and date at job start Tue Mar 31 2020 17:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09008 * 110.41344 * 2 1 4 4 C 1.54913 * 110.37068 * 237.70459 * 2 1 3 5 5 H 1.09001 * 111.03437 * 322.24019 * 4 2 1 6 6 C 1.50695 * 111.00051 * 86.07694 * 4 2 1 7 7 O 1.20826 * 120.00729 * 353.65216 * 6 4 2 8 8 O 1.34234 * 119.99531 * 173.65081 * 6 4 2 9 9 C 1.55153 * 101.58076 * 204.14977 * 4 2 1 10 10 C 1.54328 * 102.94239 * 35.50305 * 9 4 2 11 11 N 1.47015 * 107.27375 * 337.80291 * 10 9 4 12 12 C 1.34770 * 125.65330 * 178.96031 * 11 10 9 13 13 O 1.21276 * 120.00651 * 179.97438 * 12 11 10 14 14 C 1.50703 * 119.99773 * 359.97438 * 12 11 10 15 15 C 1.50699 * 109.47252 * 179.97438 * 14 12 11 16 16 C 1.38303 * 119.93389 * 269.73050 * 15 14 12 17 17 C 1.38096 * 120.06607 * 179.72345 * 16 15 14 18 18 C 1.38881 * 119.93388 * 0.54711 * 17 16 15 19 19 O 1.35749 * 120.06602 * 179.74754 * 18 17 16 20 20 C 1.34834 * 116.99322 * 174.44422 * 19 18 17 21 21 H 1.07997 * 120.00139 * 5.05116 * 20 19 18 22 22 C 1.38655 * 119.99689 * 185.05623 * 20 19 18 23 23 N 1.31556 * 119.99822 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99919 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47271 * 359.97438 * 24 22 20 26 26 H 1.48507 * 109.46986 * 119.99907 * 24 22 20 27 27 H 1.48507 * 109.46954 * 239.99659 * 24 22 20 28 28 C 1.38876 * 119.86072 * 359.72641 * 18 17 16 29 29 C 1.38098 * 119.92926 * 359.97438 * 28 18 17 30 30 H 1.08998 * 109.46882 * 182.29381 * 1 2 3 31 31 H 1.09001 * 109.47434 * 302.29344 * 1 2 3 32 32 H 1.09003 * 109.47290 * 62.30032 * 1 2 3 33 33 H 0.96702 * 117.00193 * 179.97438 * 8 6 4 34 34 H 1.09004 * 110.71888 * 153.86054 * 9 4 2 35 35 H 1.09001 * 110.72552 * 276.96179 * 9 4 2 36 36 H 1.09007 * 109.88180 * 97.22187 * 10 9 4 37 37 H 1.08998 * 109.87791 * 218.22949 * 10 9 4 38 38 H 1.08999 * 109.47473 * 300.00017 * 14 12 11 39 39 H 1.09007 * 109.47029 * 59.99906 * 14 12 11 40 40 H 1.07998 * 119.96325 * 359.97438 * 16 15 14 41 41 H 1.08008 * 120.03204 * 180.26985 * 17 16 15 42 42 H 0.97009 * 119.99717 * 179.97438 * 23 22 20 43 43 H 1.07994 * 120.03863 * 179.97438 * 28 18 17 44 44 H 1.08008 * 119.96705 * 180.02562 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9101 1.0216 0.0000 4 6 2.0692 -0.7759 -1.2276 5 1 1.4513 -1.6481 -1.4414 6 6 2.1669 0.1221 -2.4338 7 8 1.7361 1.2499 -2.3840 8 8 2.7327 -0.3309 -3.5636 9 6 3.4778 -1.1996 -0.7341 10 6 3.2493 -1.4767 0.7668 11 7 2.0431 -0.7384 1.1684 12 6 1.4970 -0.7365 2.4005 13 8 0.4963 -0.0872 2.6193 14 6 2.1298 -1.5413 3.5064 15 6 1.3319 -1.3687 4.7731 16 6 1.6475 -0.3505 5.6542 17 6 0.9145 -0.1864 6.8130 18 6 -0.1332 -1.0520 7.0988 19 8 -0.8522 -0.8963 8.2396 20 6 -1.9257 -1.6962 8.4005 21 1 -2.1323 -2.4740 7.6803 22 6 -2.7644 -1.5200 9.4905 23 7 -2.5124 -0.5727 10.3679 24 14 -4.2520 -2.6277 9.7130 25 1 -4.3124 -3.6055 8.5971 26 1 -4.1394 -3.3545 11.0032 27 1 -5.4871 -1.8031 9.7155 28 6 -0.4440 -2.0770 6.2148 29 6 0.2888 -2.2321 5.0546 30 1 -0.3633 -1.0268 0.0411 31 1 -0.3634 0.5490 0.8687 32 1 -0.3634 0.4777 -0.9099 33 1 2.7724 0.2815 -4.3109 34 1 3.8105 -2.1023 -1.2465 35 1 4.1952 -0.3912 -0.8749 36 1 3.1013 -2.5445 0.9283 37 1 4.1076 -1.1303 1.3425 38 1 2.1446 -2.5946 3.2265 39 1 3.1502 -1.1944 3.6700 40 1 2.4654 0.3194 5.4338 41 1 1.1587 0.6117 7.4986 42 1 -3.0994 -0.4492 11.1303 43 1 -1.2579 -2.7520 6.4343 44 1 0.0473 -3.0288 4.3664 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609837137.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:55 Heat of formation + Delta-G solvation = -150.235960 kcal Electronic energy + Delta-G solvation = -27847.412231 eV Core-core repulsion = 23729.462504 eV Total energy + Delta-G solvation = -4117.949727 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.89338 -41.00637 -40.47628 -38.71848 -37.88777 -37.10345 -34.41707 -33.66350 -32.53439 -32.13251 -31.75621 -28.40032 -27.62086 -26.92449 -24.51388 -23.62875 -23.60379 -22.36789 -21.36973 -20.05667 -19.81364 -19.00532 -18.81462 -18.35493 -17.66126 -16.79420 -16.67936 -16.44780 -16.30479 -16.00526 -15.71100 -15.51368 -15.16789 -14.98955 -14.95056 -14.57739 -14.41133 -14.17181 -14.07300 -13.68223 -13.58077 -13.24507 -13.01860 -12.97253 -12.73071 -12.63530 -12.55450 -12.45107 -12.27569 -12.22702 -12.10257 -12.08999 -11.79750 -11.52063 -11.16876 -10.82843 -10.58311 -9.75276 -9.63920 -8.89070 -8.47431 -6.15431 0.62695 0.67369 1.14312 1.33583 1.42289 1.52580 1.68259 1.77801 2.17389 2.31099 2.83580 3.11242 3.21079 3.46353 3.53390 3.85908 3.87952 4.05839 4.08044 4.16897 4.20459 4.23633 4.30850 4.46595 4.48077 4.56407 4.60549 4.66260 4.70345 4.81464 4.87193 4.97666 5.03789 5.09802 5.14307 5.15934 5.20497 5.31596 5.46704 5.57853 5.59285 5.72556 5.79141 6.03314 6.23817 6.55970 6.96001 6.97241 7.29087 7.79067 8.76336 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.025727 B = 0.002114 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.083061 B =13239.353851 C =13631.752513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.149 3.851 3 H 0.066 0.934 4 C -0.092 4.092 5 H 0.143 0.857 6 C 0.498 3.502 7 O -0.549 6.549 8 O -0.503 6.503 9 C -0.107 4.107 10 C 0.090 3.910 11 N -0.621 5.621 12 C 0.525 3.475 13 O -0.571 6.571 14 C -0.070 4.070 15 C -0.145 4.145 16 C -0.058 4.058 17 C -0.207 4.207 18 C 0.111 3.889 19 O -0.234 6.234 20 C -0.412 4.412 21 H 0.100 0.900 22 C -0.026 4.026 23 N -0.922 5.922 24 Si 1.021 2.979 25 H -0.252 1.252 26 H -0.265 1.265 27 H -0.270 1.270 28 C -0.244 4.244 29 C -0.058 4.058 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.430 0.570 34 H 0.128 0.872 35 H 0.085 0.915 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.145 0.855 41 H 0.110 0.890 42 H 0.272 0.728 43 H 0.117 0.883 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.667 -7.016 -29.428 34.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.046 3.954 3 H 0.084 0.916 4 C -0.112 4.112 5 H 0.160 0.840 6 C 0.341 3.659 7 O -0.440 6.440 8 O -0.317 6.317 9 C -0.145 4.145 10 C -0.032 4.032 11 N -0.356 5.356 12 C 0.315 3.685 13 O -0.450 6.450 14 C -0.109 4.109 15 C -0.146 4.146 16 C -0.076 4.076 17 C -0.226 4.226 18 C 0.061 3.939 19 O -0.141 6.141 20 C -0.489 4.489 21 H 0.118 0.882 22 C -0.223 4.223 23 N -0.560 5.560 24 Si 0.840 3.160 25 H -0.175 1.175 26 H -0.190 1.190 27 H -0.195 1.195 28 C -0.263 4.263 29 C -0.076 4.076 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.292 0.708 34 H 0.147 0.853 35 H 0.103 0.897 36 H 0.120 0.880 37 H 0.113 0.887 38 H 0.148 0.852 39 H 0.147 0.853 40 H 0.163 0.837 41 H 0.129 0.871 42 H 0.081 0.919 43 H 0.135 0.865 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 15.946 -6.415 -28.525 33.303 hybrid contribution -1.186 0.712 0.161 1.393 sum 14.760 -5.703 -28.364 32.479 Atomic orbital electron populations 1.22022 0.94690 1.02402 1.02286 1.21542 0.94676 0.95212 0.84008 0.91616 1.22204 1.02208 0.98396 0.88400 0.83973 1.23080 0.72544 0.85793 0.84433 1.90775 1.46491 1.22464 1.84228 1.84471 1.73379 1.50251 1.23595 1.22698 0.92709 1.04917 0.94130 1.22454 0.86831 0.98301 0.95567 1.48638 1.29424 1.49226 1.08336 1.20923 0.83532 0.81488 0.82521 1.90732 1.27271 1.44831 1.82125 1.20508 0.99869 1.02406 0.88096 1.19256 0.99735 0.98278 0.97303 1.20865 0.98231 0.96673 0.91794 1.20436 0.99169 1.01828 1.01215 1.19939 0.92502 0.94629 0.86787 1.83939 1.38293 1.57640 1.34263 1.21860 1.02286 1.13486 1.11223 0.88226 1.26634 1.02012 0.99224 0.94453 1.70201 1.39530 1.33095 1.13216 0.84509 0.75186 0.77079 0.79263 1.17491 1.18988 1.19489 1.21225 1.05111 1.01769 0.98194 1.20926 0.93451 0.98635 0.94579 0.92157 0.92673 0.91851 0.70842 0.85328 0.89661 0.87952 0.88712 0.85161 0.85323 0.83740 0.87144 0.91863 0.86521 0.84288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.72 8.59 71.98 0.62 -3.10 16 2 C 0.15 2.81 2.83 45.46 0.13 2.94 16 3 H 0.07 1.52 7.51 -2.38 -0.02 1.50 16 4 C -0.09 -0.94 2.96 -10.15 -0.03 -0.97 16 5 H 0.14 1.00 8.06 -2.39 -0.02 0.98 16 6 C 0.50 6.32 7.63 71.23 0.54 6.86 16 7 O -0.55 -11.71 16.39 21.96 0.36 -11.35 16 8 O -0.50 -3.14 13.41 -51.45 -0.69 -3.83 16 9 C -0.11 -0.42 6.40 31.78 0.20 -0.22 16 10 C 0.09 0.55 6.49 86.73 0.56 1.12 16 11 N -0.62 -10.61 3.24 -788.15 -2.56 -13.17 16 12 C 0.52 13.02 7.62 87.66 0.67 13.69 16 13 O -0.57 -20.93 13.75 -3.02 -0.04 -20.97 16 14 C -0.07 -1.37 5.02 29.10 0.15 -1.22 16 15 C -0.14 -4.61 4.38 -19.83 -0.09 -4.70 16 16 C -0.06 -2.06 9.69 22.25 0.22 -1.84 16 17 C -0.21 -9.48 9.99 22.39 0.22 -9.26 16 18 C 0.11 5.91 6.65 22.58 0.15 6.06 16 19 O -0.23 -14.84 9.76 -22.78 -0.22 -15.06 16 20 C -0.41 -25.10 9.49 67.92 0.64 -24.46 16 21 H 0.10 5.60 5.20 -2.91 -0.02 5.59 16 22 C -0.03 -1.55 5.49 84.83 0.47 -1.08 16 23 N -0.92 -58.52 13.67 21.61 0.30 -58.22 16 24 Si 1.02 44.51 29.55 68.60 2.03 46.53 16 25 H -0.25 -10.15 7.11 99.48 0.71 -9.44 16 26 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 27 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 28 C -0.24 -11.29 9.17 22.39 0.21 -11.08 16 29 C -0.06 -2.10 9.69 22.25 0.22 -1.88 16 30 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.05 1.75 6.09 -2.39 -0.01 1.74 16 32 H 0.06 1.43 7.97 -2.39 -0.02 1.41 16 33 H 0.43 -0.39 9.10 -74.06 -0.67 -1.07 16 34 H 0.13 -0.18 8.14 -2.38 -0.02 -0.20 16 35 H 0.08 0.35 8.03 -2.39 -0.02 0.33 16 36 H 0.10 0.20 8.14 -2.38 -0.02 0.18 16 37 H 0.09 0.32 8.14 -2.39 -0.02 0.31 16 38 H 0.13 1.67 8.08 -2.39 -0.02 1.65 16 39 H 0.13 1.70 8.08 -2.38 -0.02 1.68 16 40 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 41 H 0.11 5.01 8.06 -2.91 -0.02 4.99 16 42 H 0.27 15.75 8.31 -92.70 -0.77 14.98 16 43 H 0.12 5.49 5.64 -2.91 -0.02 5.47 16 44 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -91.09 372.03 4.42 -86.67 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 0.37 Total: 18.55 kcal Atomic # 6 Polarization: -34.03 SS G_CDS: 4.88 Total: -29.15 kcal Atomic # 7 Polarization: -69.13 SS G_CDS: -2.26 Total: -71.39 kcal Atomic # 8 Polarization: -50.62 SS G_CDS: -0.59 Total: -51.21 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -91.09 4.42 -86.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609837137.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.562 kcal (2) G-P(sol) polarization free energy of solvation -91.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds