Wall clock time and date at job start Tue Mar 31 2020 18:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.46982 * 2 1 4 4 C 1.46768 * 124.35137 * 89.99956 * 3 2 1 5 5 C 1.54487 * 105.47191 * 162.98266 * 4 3 2 6 6 C 1.54626 * 101.76569 * 25.41574 * 5 4 3 7 7 H 1.08998 * 110.48402 * 216.52368 * 6 5 4 8 8 O 1.45201 * 110.48454 * 94.01294 * 6 5 4 9 9 C 1.34230 * 116.99674 * 151.84127 * 8 6 5 10 10 O 1.20826 * 120.00127 * 0.02562 * 9 8 6 11 11 C 1.50700 * 119.99976 * 179.97438 * 9 8 6 12 12 C 1.50701 * 109.47258 * 180.02562 * 11 9 8 13 13 C 1.38326 * 119.96118 * 269.72450 * 12 11 9 14 14 C 1.38284 * 120.13489 * 179.76569 * 13 12 11 15 15 C 1.38122 * 120.06641 * 0.51095 * 14 13 12 16 16 C 1.38853 * 119.93108 * 359.74266 * 15 14 13 17 17 O 1.35753 * 120.06566 * 179.97438 * 16 15 14 18 18 C 1.34828 * 117.00091 * 354.48512 * 17 16 15 19 19 H 1.07998 * 120.00267 * 5.06222 * 18 17 16 20 20 C 1.38653 * 120.00168 * 185.05898 * 18 17 16 21 21 N 1.31564 * 120.00068 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 120.00255 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46920 * 90.00231 * 22 20 18 24 24 H 1.48496 * 109.46936 * 210.00183 * 22 20 18 25 25 H 1.48498 * 109.46780 * 330.00106 * 22 20 18 26 26 C 1.38078 * 119.96816 * 89.99750 * 12 11 9 27 27 C 1.34429 * 124.34804 * 269.99603 * 3 2 1 28 28 O 1.21276 * 124.94266 * 0.44687 * 27 3 2 29 29 H 1.09002 * 109.47340 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47304 * 300.00165 * 1 2 3 31 31 H 1.09003 * 109.47269 * 60.00152 * 1 2 3 32 32 H 1.08999 * 109.47304 * 239.99835 * 2 1 3 33 33 H 1.09003 * 109.47269 * 119.99848 * 2 1 3 34 34 H 1.08993 * 110.24594 * 43.98376 * 4 3 2 35 35 H 1.09005 * 110.24354 * 281.98040 * 4 3 2 36 36 H 1.08998 * 110.96605 * 267.29778 * 5 4 3 37 37 H 1.08997 * 110.99593 * 143.54827 * 5 4 3 38 38 H 1.09004 * 109.47143 * 300.00165 * 11 9 8 39 39 H 1.09002 * 109.47401 * 59.99718 * 11 9 8 40 40 H 1.08002 * 119.93386 * 359.97438 * 13 12 11 41 41 H 1.07999 * 119.96432 * 180.25380 * 14 13 12 42 42 H 1.08008 * 120.02994 * 179.72168 * 15 14 13 43 43 H 0.96998 * 120.00070 * 179.97438 * 21 20 18 44 44 H 1.07997 * 120.03231 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2943 2.1620 1.2117 5 6 3.1744 3.3442 0.7486 6 6 2.7694 3.4754 -0.7379 7 1 3.6326 3.7459 -1.3460 8 8 1.7126 4.4591 -0.8917 9 6 1.6480 5.1055 -2.0664 10 8 2.4478 4.8571 -2.9374 11 6 0.5773 6.1401 -2.2993 12 6 0.7238 6.7113 -3.6861 13 6 1.5151 7.8268 -3.8937 14 6 1.6560 8.3511 -5.1655 15 6 0.9982 7.7683 -6.2310 16 6 0.1990 6.6516 -6.0250 17 8 -0.4491 6.0769 -7.0702 18 6 -0.3677 6.7044 -8.2608 19 1 0.2606 7.5760 -8.3700 20 6 -1.0906 6.2308 -9.3450 21 7 -1.8564 5.1693 -9.2119 22 14 -0.9773 7.0998 -10.9947 23 1 0.1286 6.5089 -11.7905 24 1 -2.2576 6.9367 -11.7290 25 1 -0.7127 8.5445 -10.7759 26 6 0.0638 6.1241 -4.7472 27 6 2.2712 2.0963 -1.1099 28 8 2.1210 1.6945 -2.2443 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 2.8323 1.5532 1.9383 35 1 1.3636 2.5309 1.6429 36 1 4.2331 3.1033 0.8447 37 1 2.9312 4.2519 1.3008 38 1 -0.4041 5.6761 -2.1997 39 1 0.6778 6.9388 -1.5644 40 1 2.0265 8.2872 -3.0613 41 1 2.2777 9.2197 -5.3250 42 1 1.1051 8.1810 -7.2234 43 1 -2.3624 4.8382 -9.9703 44 1 -0.5577 5.2561 -4.5837 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645934237.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:32 Heat of formation + Delta-G solvation = -111.903842 kcal Electronic energy + Delta-G solvation = -27983.138872 eV Core-core repulsion = 23866.851350 eV Total energy + Delta-G solvation = -4116.287521 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.22240 -39.86914 -38.87951 -36.95485 -36.63742 -36.05774 -33.73218 -32.41513 -32.02901 -29.71968 -29.21606 -27.98179 -26.98547 -25.22493 -23.95382 -22.67269 -21.79486 -21.51152 -20.43281 -19.68151 -17.95926 -17.66234 -17.27905 -16.91842 -16.55540 -16.24134 -15.77441 -15.33185 -15.00745 -14.62184 -14.38017 -14.20359 -14.00859 -13.82361 -13.59836 -13.50092 -13.39884 -13.05847 -12.81550 -12.67480 -12.43901 -12.20669 -12.09675 -11.98282 -11.65449 -11.53052 -11.41405 -11.32065 -11.25130 -10.82713 -10.78154 -10.60842 -10.41249 -10.30412 -9.79081 -9.30186 -9.06426 -8.79306 -8.08391 -7.19475 -6.39038 -3.98244 1.77649 2.18646 2.35051 2.41432 2.62728 3.02081 3.17133 3.17721 3.22327 3.92357 3.96907 4.01090 4.36667 4.48127 4.65326 4.69414 4.82850 4.88451 4.94910 5.03400 5.08268 5.13564 5.17323 5.25148 5.32374 5.37624 5.47877 5.52701 5.56267 5.64411 5.76416 5.90178 5.94149 6.19047 6.21607 6.35622 6.36541 6.67924 6.74280 6.93497 7.10054 7.25770 7.38585 7.47265 7.82765 7.86687 7.88552 8.05461 9.06207 9.76891 10.79087 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.015801 B = 0.002562 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.604892 B =10925.674715 C =12197.175832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.122 3.878 3 N -0.617 5.617 4 C 0.103 3.897 5 C -0.129 4.129 6 C 0.055 3.945 7 H 0.119 0.881 8 O -0.341 6.341 9 C 0.455 3.545 10 O -0.471 6.471 11 C -0.060 4.060 12 C -0.046 4.046 13 C -0.195 4.195 14 C -0.075 4.075 15 C -0.227 4.227 16 C 0.155 3.845 17 O -0.178 6.178 18 C -0.391 4.391 19 H 0.092 0.908 20 C 0.039 3.961 21 N -0.863 5.863 22 Si 0.941 3.059 23 H -0.273 1.273 24 H -0.278 1.278 25 H -0.268 1.268 26 C -0.170 4.170 27 C 0.503 3.497 28 O -0.499 6.499 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.101 0.899 37 H 0.107 0.893 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.105 0.895 41 H 0.109 0.891 42 H 0.127 0.873 43 H 0.270 0.730 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.606 -3.848 25.116 26.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.001 3.999 3 N -0.354 5.354 4 C -0.019 4.019 5 C -0.166 4.166 6 C -0.004 4.004 7 H 0.137 0.863 8 O -0.259 6.259 9 C 0.296 3.704 10 O -0.354 6.354 11 C -0.097 4.097 12 C -0.046 4.046 13 C -0.214 4.214 14 C -0.093 4.093 15 C -0.246 4.246 16 C 0.101 3.899 17 O -0.081 6.081 18 C -0.468 4.468 19 H 0.109 0.891 20 C -0.165 4.165 21 N -0.498 5.498 22 Si 0.766 3.234 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.192 1.192 26 C -0.189 4.189 27 C 0.288 3.712 28 O -0.372 6.372 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.119 0.881 37 H 0.125 0.875 38 H 0.129 0.871 39 H 0.130 0.870 40 H 0.123 0.877 41 H 0.127 0.873 42 H 0.145 0.855 43 H 0.079 0.921 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 7.466 -4.593 24.035 25.583 hybrid contribution 0.184 0.317 -0.862 0.936 sum 7.649 -4.277 23.173 24.775 Atomic orbital electron populations 1.22168 0.95481 1.02500 1.02787 1.21382 0.94687 0.80622 1.03206 1.48303 1.65918 1.14060 1.07119 1.22124 0.99894 0.92486 0.87439 1.22774 1.00777 0.99968 0.93110 1.23282 0.91909 0.86136 0.99061 0.86350 1.86624 1.51323 1.49337 1.38605 1.24030 0.85862 0.81013 0.79509 1.90756 1.39703 1.62069 1.42884 1.20254 0.96756 0.95652 0.97055 1.18645 0.98334 0.95860 0.91780 1.20355 1.04601 0.99570 0.96859 1.20680 0.97758 0.98403 0.92450 1.21205 1.03563 1.00021 0.99858 1.19254 0.91119 0.91016 0.88515 1.83985 1.62611 1.45940 1.15585 1.21322 1.28573 1.12427 0.84445 0.89082 1.25291 0.95455 0.96536 0.99267 1.70049 1.26284 1.21721 1.31713 0.85712 0.78087 0.79234 0.80379 1.19896 1.20276 1.19208 1.19982 1.05884 1.02829 0.90202 1.21006 0.77856 0.87517 0.84802 1.90820 1.50878 1.74584 1.20878 0.91269 0.92335 0.91948 0.89881 0.90213 0.89871 0.90453 0.88077 0.87486 0.87066 0.87032 0.87717 0.87314 0.85489 0.92060 0.86652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 10.24 37.16 0.38 -1.01 16 2 C 0.12 1.00 6.65 -4.04 -0.03 0.97 16 3 N -0.62 -5.99 2.93 -172.41 -0.51 -6.50 16 4 C 0.10 0.59 7.35 -3.12 -0.02 0.57 16 5 C -0.13 -0.77 6.92 -25.10 -0.17 -0.94 16 6 C 0.06 0.64 3.24 -26.74 -0.09 0.55 16 7 H 0.12 1.50 7.20 -51.93 -0.37 1.13 16 8 O -0.34 -4.42 9.95 -39.26 -0.39 -4.81 16 9 C 0.45 7.24 7.95 36.01 0.29 7.53 16 10 O -0.47 -9.53 15.27 -18.75 -0.29 -9.81 16 11 C -0.06 -0.84 5.94 -29.03 -0.17 -1.01 16 12 C -0.05 -0.86 4.37 -104.65 -0.46 -1.32 16 13 C -0.19 -3.51 9.70 -39.53 -0.38 -3.90 16 14 C -0.07 -1.44 10.04 -39.61 -0.40 -1.84 16 15 C -0.23 -5.19 9.17 -39.40 -0.36 -5.56 16 16 C 0.15 3.96 6.65 -39.11 -0.26 3.70 16 17 O -0.18 -5.32 9.76 0.04 0.00 -5.32 16 18 C -0.39 -11.35 9.49 30.89 0.29 -11.06 16 19 H 0.09 2.44 5.20 -52.49 -0.27 2.16 16 20 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 21 N -0.86 -26.15 13.67 55.48 0.76 -25.39 16 22 Si 0.94 21.16 29.55 -169.99 -5.02 16.14 16 23 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 24 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 26 C -0.17 -3.85 9.64 -39.40 -0.38 -4.23 16 27 C 0.50 7.07 7.72 -10.86 -0.08 6.98 16 28 O -0.50 -9.64 17.60 5.56 0.10 -9.54 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.80 7.93 -51.93 -0.41 0.39 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.11 0.47 8.11 -51.93 -0.42 0.05 16 38 H 0.11 1.39 8.08 -51.93 -0.42 0.97 16 39 H 0.11 1.15 8.08 -51.93 -0.42 0.74 16 40 H 0.10 1.55 8.06 -52.49 -0.42 1.13 16 41 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 42 H 0.13 2.88 5.64 -52.48 -0.30 2.58 16 43 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.12 2.58 8.06 -52.49 -0.42 2.16 16 LS Contribution 380.34 15.07 5.73 5.73 Total: -1.00 -38.35 380.34 -7.54 -45.89 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -5.98 Total: 3.17 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -1.94 Total: -9.55 kcal Atomic # 7 Polarization: -32.14 SS G_CDS: 0.25 Total: -31.89 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -0.58 Total: -29.49 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -38.35 -7.54 -45.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645934237.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.017 kcal (2) G-P(sol) polarization free energy of solvation -38.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds