Wall clock time and date at job start Tue Mar 31 2020 18:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.46982 * 2 1 4 4 C 1.46768 * 124.35137 * 89.99956 * 3 2 1 5 5 C 1.54487 * 105.47191 * 162.98266 * 4 3 2 6 6 C 1.54626 * 101.76569 * 25.41574 * 5 4 3 7 7 H 1.08998 * 110.48402 * 216.52368 * 6 5 4 8 8 O 1.45201 * 110.48454 * 94.01294 * 6 5 4 9 9 C 1.34230 * 116.99674 * 151.84127 * 8 6 5 10 10 O 1.20826 * 120.00127 * 0.02562 * 9 8 6 11 11 C 1.50700 * 119.99976 * 179.97438 * 9 8 6 12 12 C 1.50701 * 109.47258 * 180.02562 * 11 9 8 13 13 C 1.38326 * 119.96118 * 269.72450 * 12 11 9 14 14 C 1.38284 * 120.13489 * 179.76569 * 13 12 11 15 15 C 1.38122 * 120.06641 * 0.51095 * 14 13 12 16 16 C 1.38853 * 119.93108 * 359.74266 * 15 14 13 17 17 O 1.35753 * 120.06566 * 179.97438 * 16 15 14 18 18 C 1.34828 * 117.00091 * 354.48512 * 17 16 15 19 19 H 1.07998 * 120.00267 * 5.06222 * 18 17 16 20 20 C 1.38653 * 120.00168 * 185.05898 * 18 17 16 21 21 N 1.31564 * 120.00068 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 120.00255 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46920 * 90.00231 * 22 20 18 24 24 H 1.48496 * 109.46936 * 210.00183 * 22 20 18 25 25 H 1.48498 * 109.46780 * 330.00106 * 22 20 18 26 26 C 1.38078 * 119.96816 * 89.99750 * 12 11 9 27 27 C 1.34429 * 124.34804 * 269.99603 * 3 2 1 28 28 O 1.21276 * 124.94266 * 0.44687 * 27 3 2 29 29 H 1.09002 * 109.47340 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47304 * 300.00165 * 1 2 3 31 31 H 1.09003 * 109.47269 * 60.00152 * 1 2 3 32 32 H 1.08999 * 109.47304 * 239.99835 * 2 1 3 33 33 H 1.09003 * 109.47269 * 119.99848 * 2 1 3 34 34 H 1.08993 * 110.24594 * 43.98376 * 4 3 2 35 35 H 1.09005 * 110.24354 * 281.98040 * 4 3 2 36 36 H 1.08998 * 110.96605 * 267.29778 * 5 4 3 37 37 H 1.08997 * 110.99593 * 143.54827 * 5 4 3 38 38 H 1.09004 * 109.47143 * 300.00165 * 11 9 8 39 39 H 1.09002 * 109.47401 * 59.99718 * 11 9 8 40 40 H 1.08002 * 119.93386 * 359.97438 * 13 12 11 41 41 H 1.07999 * 119.96432 * 180.25380 * 14 13 12 42 42 H 1.08008 * 120.02994 * 179.72168 * 15 14 13 43 43 H 0.96998 * 120.00070 * 179.97438 * 21 20 18 44 44 H 1.07997 * 120.03231 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2943 2.1620 1.2117 5 6 3.1744 3.3442 0.7486 6 6 2.7694 3.4754 -0.7379 7 1 3.6326 3.7459 -1.3460 8 8 1.7126 4.4591 -0.8917 9 6 1.6480 5.1055 -2.0664 10 8 2.4478 4.8571 -2.9374 11 6 0.5773 6.1401 -2.2993 12 6 0.7238 6.7113 -3.6861 13 6 1.5151 7.8268 -3.8937 14 6 1.6560 8.3511 -5.1655 15 6 0.9982 7.7683 -6.2310 16 6 0.1990 6.6516 -6.0250 17 8 -0.4491 6.0769 -7.0702 18 6 -0.3677 6.7044 -8.2608 19 1 0.2606 7.5760 -8.3700 20 6 -1.0906 6.2308 -9.3450 21 7 -1.8564 5.1693 -9.2119 22 14 -0.9773 7.0998 -10.9947 23 1 0.1286 6.5089 -11.7905 24 1 -2.2576 6.9367 -11.7290 25 1 -0.7127 8.5445 -10.7759 26 6 0.0638 6.1241 -4.7472 27 6 2.2712 2.0963 -1.1099 28 8 2.1210 1.6945 -2.2443 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 2.8323 1.5532 1.9383 35 1 1.3636 2.5309 1.6429 36 1 4.2331 3.1033 0.8447 37 1 2.9312 4.2519 1.3008 38 1 -0.4041 5.6761 -2.1997 39 1 0.6778 6.9388 -1.5644 40 1 2.0265 8.2872 -3.0613 41 1 2.2777 9.2197 -5.3250 42 1 1.1051 8.1810 -7.2234 43 1 -2.3624 4.8382 -9.9703 44 1 -0.5577 5.2561 -4.5837 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645934237.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:31 Heat of formation + Delta-G solvation = -138.387709 kcal Electronic energy + Delta-G solvation = -27984.287298 eV Core-core repulsion = 23866.851350 eV Total energy + Delta-G solvation = -4117.435948 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.24899 -41.11404 -40.55846 -38.48876 -37.85247 -37.31493 -34.49946 -34.35732 -33.59614 -31.00276 -30.43655 -29.11828 -28.12665 -27.28579 -24.66803 -23.83586 -23.25738 -22.68173 -21.95698 -20.59907 -19.55135 -19.09585 -18.84870 -18.19338 -17.54548 -17.39641 -16.79654 -16.68910 -16.35989 -16.17825 -16.07072 -15.52431 -15.30953 -14.96593 -14.89014 -14.61941 -14.50086 -14.31293 -14.11156 -13.76105 -13.66919 -13.64666 -13.14747 -13.00658 -12.87010 -12.76149 -12.58593 -12.51450 -12.42482 -12.27124 -12.21486 -12.12148 -12.02901 -11.61569 -11.24335 -10.85448 -10.83279 -9.85844 -9.73563 -9.03236 -8.49146 -6.18580 0.35082 0.70264 0.92293 1.14206 1.32049 1.42512 1.50889 1.80165 1.98471 2.16006 2.81091 3.11945 3.13218 3.32957 3.36286 3.60896 3.77085 3.94994 4.03891 4.05130 4.08253 4.19018 4.25614 4.34457 4.42536 4.44987 4.52225 4.55930 4.65257 4.69512 4.76749 4.87754 4.89841 4.98697 5.04464 5.09292 5.20345 5.22298 5.28641 5.52157 5.59297 5.66476 5.69731 5.91907 5.99728 6.18770 6.64536 6.91367 6.94720 7.76286 8.74668 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.015801 B = 0.002562 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.604892 B =10925.674715 C =12197.175832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.115 3.885 3 N -0.606 5.606 4 C 0.096 3.904 5 C -0.111 4.111 6 C 0.045 3.955 7 H 0.101 0.899 8 O -0.327 6.327 9 C 0.458 3.542 10 O -0.525 6.525 11 C -0.058 4.058 12 C -0.039 4.039 13 C -0.172 4.172 14 C -0.071 4.071 15 C -0.241 4.241 16 C 0.110 3.890 17 O -0.237 6.237 18 C -0.415 4.415 19 H 0.103 0.897 20 C -0.026 4.026 21 N -0.924 5.924 22 Si 1.023 2.977 23 H -0.265 1.265 24 H -0.269 1.269 25 H -0.249 1.249 26 C -0.194 4.194 27 C 0.484 3.516 28 O -0.574 6.574 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.020 0.980 32 H 0.058 0.942 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.092 0.908 36 H 0.126 0.874 37 H 0.133 0.867 38 H 0.126 0.874 39 H 0.167 0.833 40 H 0.158 0.842 41 H 0.152 0.848 42 H 0.121 0.879 43 H 0.273 0.727 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.419 -1.689 29.680 31.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.006 4.006 3 N -0.340 5.340 4 C -0.025 4.025 5 C -0.148 4.148 6 C -0.014 4.014 7 H 0.119 0.881 8 O -0.243 6.243 9 C 0.302 3.698 10 O -0.412 6.412 11 C -0.094 4.094 12 C -0.040 4.040 13 C -0.190 4.190 14 C -0.089 4.089 15 C -0.260 4.260 16 C 0.060 3.940 17 O -0.144 6.144 18 C -0.491 4.491 19 H 0.120 0.880 20 C -0.223 4.223 21 N -0.562 5.562 22 Si 0.841 3.159 23 H -0.190 1.190 24 H -0.193 1.193 25 H -0.173 1.173 26 C -0.213 4.213 27 C 0.270 3.730 28 O -0.454 6.454 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.040 0.960 32 H 0.076 0.924 33 H 0.143 0.857 34 H 0.142 0.858 35 H 0.110 0.890 36 H 0.144 0.856 37 H 0.152 0.848 38 H 0.144 0.856 39 H 0.185 0.815 40 H 0.175 0.825 41 H 0.170 0.830 42 H 0.138 0.862 43 H 0.082 0.918 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.296 -2.413 28.747 30.309 hybrid contribution -0.242 -0.374 -1.851 1.904 sum 9.054 -2.787 26.896 28.516 Atomic orbital electron populations 1.22132 0.95467 1.03325 1.01516 1.21600 0.94696 0.80116 1.04183 1.48542 1.63548 1.14519 1.07424 1.22562 1.01228 0.92529 0.86154 1.22945 1.02246 1.01279 0.88360 1.23610 0.90529 0.84278 1.02950 0.88112 1.86602 1.51841 1.49131 1.36771 1.24326 0.85173 0.80831 0.79467 1.90756 1.41992 1.63892 1.44577 1.20411 0.96861 0.96914 0.95253 1.19140 0.96375 0.95482 0.92967 1.21043 1.02121 0.97971 0.97900 1.21192 0.96838 0.99082 0.91806 1.21355 1.03985 0.99620 1.01071 1.19858 0.92483 0.92900 0.88721 1.83947 1.65391 1.48205 1.16825 1.21868 1.29238 1.13065 0.84955 0.87966 1.26690 0.94673 0.97306 1.03656 1.70210 1.28435 1.24276 1.33305 0.84542 0.78492 0.78595 0.74245 1.18981 1.19347 1.17268 1.20230 1.07223 1.03090 0.90777 1.21610 0.77668 0.88954 0.84753 1.90773 1.54443 1.76233 1.23908 0.89548 0.90547 0.96048 0.92391 0.85677 0.85822 0.88961 0.85569 0.84847 0.85590 0.81526 0.82464 0.83041 0.86158 0.91841 0.88270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.59 10.24 71.98 0.74 -1.85 16 2 C 0.11 1.73 6.65 86.38 0.57 2.30 16 3 N -0.61 -10.81 2.93 -817.96 -2.40 -13.21 16 4 C 0.10 0.66 7.35 86.83 0.64 1.30 16 5 C -0.11 -0.85 6.92 31.65 0.22 -0.63 16 6 C 0.05 1.00 3.24 30.59 0.10 1.10 16 7 H 0.10 2.59 7.20 -2.39 -0.02 2.57 16 8 O -0.33 -7.87 9.95 -51.42 -0.51 -8.38 16 9 C 0.46 14.09 7.95 71.24 0.57 14.65 16 10 O -0.53 -21.64 15.27 21.96 0.34 -21.30 16 11 C -0.06 -1.46 5.94 29.10 0.17 -1.29 16 12 C -0.04 -1.42 4.37 -19.88 -0.09 -1.51 16 13 C -0.17 -5.55 9.70 22.30 0.22 -5.34 16 14 C -0.07 -2.57 10.04 22.25 0.22 -2.35 16 15 C -0.24 -11.27 9.17 22.39 0.21 -11.07 16 16 C 0.11 6.02 6.65 22.57 0.15 6.17 16 17 O -0.24 -15.43 9.76 -22.76 -0.22 -15.65 16 18 C -0.42 -25.71 9.49 67.92 0.64 -25.07 16 19 H 0.10 5.78 5.20 -2.91 -0.02 5.77 16 20 C -0.03 -1.58 5.49 84.83 0.47 -1.11 16 21 N -0.92 -59.92 13.67 21.61 0.30 -59.62 16 22 Si 1.02 45.06 29.55 68.60 2.03 47.09 16 23 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 24 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 25 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 26 C -0.19 -9.25 9.64 22.39 0.22 -9.03 16 27 C 0.48 13.95 7.72 87.90 0.68 14.63 16 28 O -0.57 -24.24 17.60 -3.02 -0.05 -24.29 16 29 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.02 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.06 1.17 7.93 -2.39 -0.02 1.16 16 33 H 0.13 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.12 -0.01 8.14 -2.39 -0.02 -0.03 16 35 H 0.09 0.46 8.14 -2.38 -0.02 0.44 16 36 H 0.13 0.41 8.14 -2.39 -0.02 0.39 16 37 H 0.13 0.41 8.11 -2.39 -0.02 0.39 16 38 H 0.13 2.90 8.08 -2.39 -0.02 2.88 16 39 H 0.17 2.43 8.08 -2.39 -0.02 2.41 16 40 H 0.16 3.54 8.06 -2.91 -0.02 3.52 16 41 H 0.15 4.16 8.06 -2.91 -0.02 4.14 16 42 H 0.12 5.65 5.64 -2.91 -0.02 5.63 16 43 H 0.27 16.13 8.31 -92.71 -0.77 15.36 16 44 H 0.10 4.88 8.06 -2.91 -0.02 4.86 16 Total: -1.00 -98.48 380.34 6.21 -92.27 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: 1.02 Total: 22.20 kcal Atomic # 6 Polarization: -24.82 SS G_CDS: 5.72 Total: -19.10 kcal Atomic # 7 Polarization: -70.72 SS G_CDS: -2.10 Total: -72.83 kcal Atomic # 8 Polarization: -69.17 SS G_CDS: -0.45 Total: -69.63 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -98.48 6.21 -92.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645934237.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.120 kcal (2) G-P(sol) polarization free energy of solvation -98.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds