Wall clock time and date at job start Tue Mar 31 2020 18:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46926 * 2 1 4 4 O 1.45194 * 109.47064 * 239.99559 * 2 1 3 5 5 C 1.34769 * 116.99873 * 90.00188 * 4 2 1 6 6 O 1.21507 * 120.00012 * 0.02562 * 5 4 2 7 7 C 1.47396 * 119.99987 * 180.02562 * 5 4 2 8 8 C 1.39734 * 120.20197 * 359.97438 * 7 5 4 9 9 C 1.37805 * 119.91206 * 180.02562 * 8 7 5 10 10 C 1.38591 * 120.33005 * 0.02562 * 9 8 7 11 11 C 1.38022 * 120.41485 * 359.73727 * 10 9 8 12 12 C 1.38833 * 120.07488 * 0.51800 * 11 10 9 13 13 O 1.35509 * 120.16241 * 179.76448 * 12 11 10 14 14 C 1.34811 * 116.99882 * 5.59656 * 13 12 11 15 15 H 1.07994 * 120.00336 * 354.94437 * 14 13 12 16 16 C 1.38702 * 119.99905 * 174.93533 * 14 13 12 17 17 N 1.31517 * 119.99789 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00255 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46963 * 180.02562 * 18 16 14 20 20 H 1.48503 * 109.46663 * 299.99943 * 18 16 14 21 21 H 1.48489 * 109.47045 * 59.99798 * 18 16 14 22 22 C 1.52998 * 109.46650 * 119.99643 * 2 1 3 23 23 H 1.09001 * 109.67228 * 60.00528 * 22 2 1 24 24 C 1.53346 * 109.67234 * 180.49406 * 22 2 1 25 25 C 1.52917 * 108.67778 * 187.26562 * 24 22 2 26 26 N 1.45757 * 110.48841 * 309.24995 * 25 24 22 27 27 C 1.33356 * 124.10234 * 19.04987 * 26 25 24 28 28 O 1.21283 * 118.23933 * 177.81912 * 27 26 25 29 29 C 1.50183 * 123.52617 * 357.86025 * 27 26 25 30 30 H 1.09000 * 109.47435 * 60.00297 * 1 2 3 31 31 H 1.08997 * 109.47753 * 180.02562 * 1 2 3 32 32 H 1.09009 * 109.47177 * 300.00419 * 1 2 3 33 33 H 1.07999 * 120.04353 * 0.04480 * 8 7 5 34 34 H 1.08000 * 119.83121 * 179.97438 * 9 8 7 35 35 H 1.08003 * 119.78740 * 180.02562 * 10 9 8 36 36 H 1.07999 * 119.96076 * 180.25913 * 11 10 9 37 37 H 0.97009 * 119.99670 * 179.97438 * 17 16 14 38 38 H 1.09001 * 109.60644 * 307.03119 * 24 22 2 39 39 H 1.09003 * 109.60018 * 67.50852 * 24 22 2 40 40 H 1.09000 * 109.30216 * 69.56464 * 25 24 22 41 41 H 1.09006 * 109.30223 * 188.94154 * 25 24 22 42 42 H 0.96992 * 117.94852 * 199.07428 * 26 25 24 43 43 H 1.08994 * 109.36038 * 257.37415 * 29 27 26 44 44 H 1.09000 * 109.44735 * 137.62811 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 -1.1855 5 6 2.2179 0.0669 -2.2854 6 8 1.9978 1.2615 -2.2546 7 6 2.7080 -0.5603 -3.5260 8 6 2.9630 -1.9336 -3.5661 9 6 3.4216 -2.5138 -4.7289 10 6 3.6322 -1.7417 -5.8604 11 6 3.3801 -0.3849 -5.8374 12 6 2.9228 0.2181 -4.6735 13 8 2.6792 1.5509 -4.6475 14 6 2.7892 2.2160 -5.8150 15 1 3.1396 1.7025 -6.6981 16 6 2.4523 3.5598 -5.8820 17 7 2.0259 4.1852 -4.8065 18 14 2.6040 4.4813 -7.4999 19 1 2.1863 5.8932 -7.3063 20 1 4.0149 4.4418 -7.9615 21 1 1.7321 3.8416 -8.5175 22 6 2.0399 -0.7212 1.2493 23 1 1.6784 -1.7495 1.2526 24 6 3.5733 -0.7132 1.2603 25 6 4.0593 -1.5910 2.4142 26 7 3.3934 -1.2167 3.6556 27 6 2.2568 -0.5216 3.7142 28 8 1.7736 -0.3029 4.8049 29 6 1.5425 0.0040 2.5022 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 2.8007 -2.5396 -2.6870 34 1 3.6187 -3.5752 -4.7583 35 1 3.9914 -2.2055 -6.7672 36 1 3.5427 0.2090 -6.7246 37 1 1.7906 5.1252 -4.8533 38 1 3.9479 -1.1092 0.3164 39 1 3.9326 0.3064 1.4000 40 1 3.8415 -2.6351 2.1891 41 1 5.1360 -1.4681 2.5317 42 1 3.8028 -1.4900 4.4913 43 1 1.7365 1.0720 2.4033 44 1 0.4706 -0.1592 2.6135 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646922937.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:39 Heat of formation + Delta-G solvation = -131.244181 kcal Electronic energy + Delta-G solvation = -28707.952834 eV Core-core repulsion = 24590.826652 eV Total energy + Delta-G solvation = -4117.126181 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.64358 -39.85716 -38.82036 -37.05677 -36.46168 -35.66079 -34.01435 -32.45804 -30.89617 -30.30836 -29.39806 -29.01250 -25.67414 -25.40689 -23.72589 -22.99171 -21.78694 -20.90551 -20.11019 -19.38930 -18.12230 -17.77086 -17.38109 -16.78690 -16.23421 -15.91863 -15.52198 -15.26812 -14.75257 -14.60955 -14.51982 -14.18894 -14.12352 -13.85560 -13.69670 -13.57738 -13.29045 -12.89756 -12.78539 -12.53170 -12.13712 -11.99949 -11.80242 -11.57182 -11.40573 -11.22198 -11.18754 -11.07481 -10.95621 -10.89382 -10.68986 -10.54248 -10.25369 -9.88475 -9.74990 -9.32440 -9.28694 -8.97253 -8.38331 -7.43603 -6.55717 -4.15667 1.54905 2.25228 2.45312 3.05681 3.05775 3.07837 3.10450 3.15782 3.40853 3.84939 4.28970 4.38860 4.49658 4.52227 4.60609 4.96117 5.04238 5.06072 5.08004 5.09545 5.23166 5.32106 5.36002 5.44532 5.51595 5.57128 5.62761 5.64610 5.77693 5.86013 5.92787 6.02199 6.07430 6.13922 6.27479 6.51813 6.52737 6.60014 6.84008 6.95739 7.06124 7.09177 7.17827 7.25761 7.60176 7.82479 8.00079 8.68020 8.84410 9.52764 10.57700 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014447 B = 0.003070 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.682759 B = 9119.527435 C =10393.954494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.093 3.907 3 H 0.087 0.913 4 O -0.360 6.360 5 C 0.497 3.503 6 O -0.475 6.475 7 C -0.217 4.217 8 C -0.016 4.016 9 C -0.235 4.235 10 C -0.044 4.044 11 C -0.239 4.239 12 C 0.190 3.810 13 O -0.124 6.124 14 C -0.404 4.404 15 H 0.096 0.904 16 C 0.046 3.954 17 N -0.831 5.831 18 Si 0.942 3.058 19 H -0.276 1.276 20 H -0.268 1.268 21 H -0.268 1.268 22 C -0.084 4.084 23 H 0.089 0.911 24 C -0.136 4.136 25 C 0.111 3.889 26 N -0.721 5.721 27 C 0.525 3.475 28 O -0.562 6.562 29 C -0.131 4.131 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.124 0.876 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.134 0.866 37 H 0.274 0.726 38 H 0.097 0.903 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.398 0.602 43 H 0.105 0.895 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.030 -12.026 8.178 14.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.038 3.962 3 H 0.105 0.895 4 O -0.279 6.279 5 C 0.343 3.657 6 O -0.361 6.361 7 C -0.220 4.220 8 C -0.034 4.034 9 C -0.254 4.254 10 C -0.062 4.062 11 C -0.258 4.258 12 C 0.131 3.869 13 O -0.022 6.022 14 C -0.479 4.479 15 H 0.113 0.887 16 C -0.163 4.163 17 N -0.462 5.462 18 Si 0.766 3.234 19 H -0.201 1.201 20 H -0.193 1.193 21 H -0.193 1.193 22 C -0.103 4.103 23 H 0.108 0.892 24 C -0.174 4.174 25 C -0.013 4.013 26 N -0.373 5.373 27 C 0.312 3.688 28 O -0.441 6.441 29 C -0.170 4.170 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.142 0.858 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.151 0.849 37 H 0.084 0.916 38 H 0.115 0.885 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.233 0.767 43 H 0.123 0.877 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.433 -10.986 8.817 14.295 hybrid contribution 0.320 0.378 -0.675 0.837 sum 2.753 -10.608 8.143 13.653 Atomic orbital electron populations 1.22242 0.94559 1.02786 1.03328 1.22469 0.94279 0.97248 0.82199 0.89514 1.86548 1.78535 1.42546 1.20269 1.21092 0.75957 0.85508 0.83167 1.90996 1.46898 1.15097 1.83135 1.18024 1.19363 0.93532 0.91057 1.20947 0.92798 0.92224 0.97438 1.20539 1.11542 0.99229 0.94102 1.20969 0.94676 0.93280 0.97301 1.21117 1.10052 0.95553 0.99097 1.19234 0.90928 0.84949 0.91813 1.84138 1.71285 1.13216 1.33573 1.21481 1.46593 0.93111 0.86750 0.88701 1.25409 0.95705 0.95876 0.99270 1.70104 1.37121 1.10996 1.27982 0.85770 0.79238 0.78529 0.79864 1.20076 1.19274 1.19265 1.21323 0.95775 1.00884 0.92333 0.89217 1.21964 0.95203 1.01131 0.99106 1.21422 0.97120 0.99040 0.83717 1.45517 1.25176 1.56344 1.10226 1.20109 0.80423 0.77203 0.91052 1.90761 1.65339 1.58407 1.29572 1.21744 1.01797 1.02292 0.91199 0.91349 0.91751 0.90983 0.85797 0.87024 0.86993 0.84867 0.91641 0.88473 0.90727 0.91296 0.90336 0.76718 0.87666 0.87519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 9.23 37.16 0.34 -1.85 16 2 C 0.09 1.28 2.13 -26.73 -0.06 1.23 16 3 H 0.09 1.37 7.16 -51.93 -0.37 1.00 16 4 O -0.36 -5.91 8.39 -40.68 -0.34 -6.25 16 5 C 0.50 10.53 7.86 34.46 0.27 10.80 16 6 O -0.48 -12.12 14.43 -26.59 -0.38 -12.50 16 7 C -0.22 -4.57 5.89 -104.83 -0.62 -5.19 16 8 C -0.02 -0.27 9.61 -39.18 -0.38 -0.64 16 9 C -0.24 -3.70 10.02 -39.61 -0.40 -4.09 16 10 C -0.04 -0.73 10.03 -39.53 -0.40 -1.13 16 11 C -0.24 -4.89 9.16 -39.44 -0.36 -5.25 16 12 C 0.19 4.52 6.66 -38.58 -0.26 4.27 16 13 O -0.12 -3.51 7.84 -21.02 -0.16 -3.67 16 14 C -0.40 -10.97 9.49 30.90 0.29 -10.68 16 15 H 0.10 2.32 5.21 -52.49 -0.27 2.05 16 16 C 0.05 1.23 5.49 -17.51 -0.10 1.13 16 17 N -0.83 -24.13 13.67 55.48 0.76 -23.37 16 18 Si 0.94 19.76 29.55 -169.99 -5.02 14.74 16 19 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 20 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 21 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 22 C -0.08 -0.86 2.06 -90.41 -0.19 -1.05 16 23 H 0.09 0.85 8.13 -51.93 -0.42 0.43 16 24 C -0.14 -1.27 5.26 -26.59 -0.14 -1.41 16 25 C 0.11 0.78 7.17 -4.49 -0.03 0.75 16 26 N -0.72 -6.30 5.45 -61.38 -0.33 -6.64 16 27 C 0.52 6.07 7.71 -11.87 -0.09 5.98 16 28 O -0.56 -8.71 17.78 5.55 0.10 -8.61 16 29 C -0.13 -1.32 4.67 -28.10 -0.13 -1.45 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.76 6.72 -51.92 -0.35 0.41 16 33 H 0.12 1.75 7.61 -52.49 -0.40 1.35 16 34 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 35 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 36 H 0.13 2.67 5.64 -52.49 -0.30 2.37 16 37 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 38 H 0.10 0.97 7.52 -51.93 -0.39 0.58 16 39 H 0.07 0.74 8.12 -51.93 -0.42 0.32 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.40 3.01 8.80 -40.82 -0.36 2.65 16 43 H 0.11 1.05 8.10 -51.93 -0.42 0.62 16 44 H 0.11 1.00 7.10 -51.93 -0.37 0.63 16 LS Contribution 367.97 15.07 5.55 5.55 Total: -1.00 -34.48 367.97 -7.82 -42.30 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -5.74 Total: 7.04 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -2.23 Total: -8.58 kcal Atomic # 7 Polarization: -30.43 SS G_CDS: 0.42 Total: -30.01 kcal Atomic # 8 Polarization: -30.24 SS G_CDS: -0.79 Total: -31.04 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.48 -7.82 -42.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646922937.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.947 kcal (2) G-P(sol) polarization free energy of solvation -34.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds