Wall clock time and date at job start Tue Mar 31 2020 18:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46926 * 2 1 4 4 O 1.45194 * 109.47064 * 239.99559 * 2 1 3 5 5 C 1.34769 * 116.99873 * 90.00188 * 4 2 1 6 6 O 1.21507 * 120.00012 * 0.02562 * 5 4 2 7 7 C 1.47396 * 119.99987 * 180.02562 * 5 4 2 8 8 C 1.39734 * 120.20197 * 359.97438 * 7 5 4 9 9 C 1.37805 * 119.91206 * 180.02562 * 8 7 5 10 10 C 1.38591 * 120.33005 * 0.02562 * 9 8 7 11 11 C 1.38022 * 120.41485 * 359.73727 * 10 9 8 12 12 C 1.38833 * 120.07488 * 0.51800 * 11 10 9 13 13 O 1.35509 * 120.16241 * 179.76448 * 12 11 10 14 14 C 1.34811 * 116.99882 * 5.59656 * 13 12 11 15 15 H 1.07994 * 120.00336 * 354.94437 * 14 13 12 16 16 C 1.38702 * 119.99905 * 174.93533 * 14 13 12 17 17 N 1.31517 * 119.99789 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00255 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46963 * 180.02562 * 18 16 14 20 20 H 1.48503 * 109.46663 * 299.99943 * 18 16 14 21 21 H 1.48489 * 109.47045 * 59.99798 * 18 16 14 22 22 C 1.52998 * 109.46650 * 119.99643 * 2 1 3 23 23 H 1.09001 * 109.67228 * 60.00528 * 22 2 1 24 24 C 1.53346 * 109.67234 * 180.49406 * 22 2 1 25 25 C 1.52917 * 108.67778 * 187.26562 * 24 22 2 26 26 N 1.45757 * 110.48841 * 309.24995 * 25 24 22 27 27 C 1.33356 * 124.10234 * 19.04987 * 26 25 24 28 28 O 1.21283 * 118.23933 * 177.81912 * 27 26 25 29 29 C 1.50183 * 123.52617 * 357.86025 * 27 26 25 30 30 H 1.09000 * 109.47435 * 60.00297 * 1 2 3 31 31 H 1.08997 * 109.47753 * 180.02562 * 1 2 3 32 32 H 1.09009 * 109.47177 * 300.00419 * 1 2 3 33 33 H 1.07999 * 120.04353 * 0.04480 * 8 7 5 34 34 H 1.08000 * 119.83121 * 179.97438 * 9 8 7 35 35 H 1.08003 * 119.78740 * 180.02562 * 10 9 8 36 36 H 1.07999 * 119.96076 * 180.25913 * 11 10 9 37 37 H 0.97009 * 119.99670 * 179.97438 * 17 16 14 38 38 H 1.09001 * 109.60644 * 307.03119 * 24 22 2 39 39 H 1.09003 * 109.60018 * 67.50852 * 24 22 2 40 40 H 1.09000 * 109.30216 * 69.56464 * 25 24 22 41 41 H 1.09006 * 109.30223 * 188.94154 * 25 24 22 42 42 H 0.96992 * 117.94852 * 199.07428 * 26 25 24 43 43 H 1.08994 * 109.36038 * 257.37415 * 29 27 26 44 44 H 1.09000 * 109.44735 * 137.62811 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 -1.1855 5 6 2.2179 0.0669 -2.2854 6 8 1.9978 1.2615 -2.2546 7 6 2.7080 -0.5603 -3.5260 8 6 2.9630 -1.9336 -3.5661 9 6 3.4216 -2.5138 -4.7289 10 6 3.6322 -1.7417 -5.8604 11 6 3.3801 -0.3849 -5.8374 12 6 2.9228 0.2181 -4.6735 13 8 2.6792 1.5509 -4.6475 14 6 2.7892 2.2160 -5.8150 15 1 3.1396 1.7025 -6.6981 16 6 2.4523 3.5598 -5.8820 17 7 2.0259 4.1852 -4.8065 18 14 2.6040 4.4813 -7.4999 19 1 2.1863 5.8932 -7.3063 20 1 4.0149 4.4418 -7.9615 21 1 1.7321 3.8416 -8.5175 22 6 2.0399 -0.7212 1.2493 23 1 1.6784 -1.7495 1.2526 24 6 3.5733 -0.7132 1.2603 25 6 4.0593 -1.5910 2.4142 26 7 3.3934 -1.2167 3.6556 27 6 2.2568 -0.5216 3.7142 28 8 1.7736 -0.3029 4.8049 29 6 1.5425 0.0040 2.5022 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 2.8007 -2.5396 -2.6870 34 1 3.6187 -3.5752 -4.7583 35 1 3.9914 -2.2055 -6.7672 36 1 3.5427 0.2090 -6.7246 37 1 1.7906 5.1252 -4.8533 38 1 3.9479 -1.1092 0.3164 39 1 3.9326 0.3064 1.4000 40 1 3.8415 -2.6351 2.1891 41 1 5.1360 -1.4681 2.5317 42 1 3.8028 -1.4900 4.4913 43 1 1.7365 1.0720 2.4033 44 1 0.4706 -0.1592 2.6135 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646922937.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:38 Heat of formation + Delta-G solvation = -154.432363 kcal Electronic energy + Delta-G solvation = -28708.958349 eV Core-core repulsion = 24590.826652 eV Total energy + Delta-G solvation = -4118.131696 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.77200 -41.22661 -40.38380 -38.29741 -38.03765 -36.96585 -35.06914 -34.35631 -32.31949 -31.31599 -30.61122 -30.33341 -27.46137 -26.51442 -25.10555 -23.90667 -23.33179 -22.20223 -21.45940 -20.27509 -19.88302 -19.23363 -18.38734 -18.28400 -17.48814 -17.05743 -16.84356 -16.47187 -16.28855 -16.13875 -15.64815 -15.58970 -15.32492 -15.20397 -15.06037 -14.71014 -14.38607 -14.30233 -14.10587 -13.93488 -13.56295 -13.22332 -13.01008 -12.85733 -12.69750 -12.62088 -12.50874 -12.37697 -12.16515 -12.08145 -12.07365 -11.76434 -11.56837 -11.49223 -11.05535 -10.83721 -10.79717 -10.07967 -9.89159 -9.09065 -8.47423 -6.18355 -0.00077 0.72138 1.33400 1.45735 1.50711 1.54464 1.72903 1.80440 2.14687 2.33220 2.84164 3.17172 3.35248 3.41052 3.55603 3.65829 3.77597 3.96861 4.10753 4.13425 4.16065 4.24045 4.28766 4.41088 4.42041 4.53420 4.57621 4.67550 4.74466 4.82139 4.84387 4.89337 4.98558 5.05342 5.08438 5.15008 5.16219 5.23643 5.49685 5.51051 5.65445 5.69746 5.81916 5.94235 6.15520 6.28723 6.91818 7.06802 7.16490 7.73269 8.72217 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014447 B = 0.003070 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.682759 B = 9119.527435 C =10393.954494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.088 3.912 3 H 0.058 0.942 4 O -0.340 6.340 5 C 0.500 3.500 6 O -0.530 6.530 7 C -0.236 4.236 8 C -0.009 4.009 9 C -0.204 4.204 10 C -0.029 4.029 11 C -0.259 4.259 12 C 0.156 3.844 13 O -0.187 6.187 14 C -0.428 4.428 15 H 0.110 0.890 16 C -0.019 4.019 17 N -0.902 5.902 18 Si 1.020 2.980 19 H -0.275 1.275 20 H -0.253 1.253 21 H -0.254 1.254 22 C -0.070 4.070 23 H 0.110 0.890 24 C -0.139 4.139 25 C 0.115 3.885 26 N -0.709 5.709 27 C 0.524 3.476 28 O -0.607 6.607 29 C -0.128 4.128 30 H 0.031 0.969 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.161 0.839 34 H 0.165 0.835 35 H 0.158 0.842 36 H 0.128 0.872 37 H 0.272 0.728 38 H 0.094 0.906 39 H 0.061 0.939 40 H 0.092 0.908 41 H 0.102 0.898 42 H 0.406 0.594 43 H 0.101 0.899 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.402 -16.778 7.574 18.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.033 3.967 3 H 0.076 0.924 4 O -0.258 6.258 5 C 0.348 3.652 6 O -0.420 6.420 7 C -0.239 4.239 8 C -0.027 4.027 9 C -0.223 4.223 10 C -0.047 4.047 11 C -0.278 4.278 12 C 0.101 3.899 13 O -0.090 6.090 14 C -0.503 4.503 15 H 0.127 0.873 16 C -0.219 4.219 17 N -0.538 5.538 18 Si 0.839 3.161 19 H -0.199 1.199 20 H -0.177 1.177 21 H -0.178 1.178 22 C -0.089 4.089 23 H 0.128 0.872 24 C -0.177 4.177 25 C -0.008 4.008 26 N -0.360 5.360 27 C 0.312 3.688 28 O -0.490 6.490 29 C -0.167 4.167 30 H 0.050 0.950 31 H 0.105 0.895 32 H 0.113 0.887 33 H 0.179 0.821 34 H 0.183 0.817 35 H 0.175 0.825 36 H 0.146 0.854 37 H 0.081 0.919 38 H 0.112 0.888 39 H 0.080 0.920 40 H 0.110 0.890 41 H 0.120 0.880 42 H 0.242 0.758 43 H 0.119 0.881 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.856 -15.859 8.202 18.266 hybrid contribution -0.020 1.361 -0.367 1.410 sum 3.836 -14.498 7.835 16.920 Atomic orbital electron populations 1.22249 0.93692 1.03975 1.02719 1.22759 0.95108 0.96391 0.82485 0.92407 1.86503 1.77937 1.41505 1.19893 1.21331 0.74721 0.84922 0.84273 1.90992 1.49220 1.17648 1.84171 1.18510 1.19565 0.95446 0.90329 1.21414 0.91436 0.90216 0.99661 1.21226 1.07086 1.01565 0.92373 1.21519 0.92198 0.91417 0.99581 1.21288 1.11017 0.97582 0.97917 1.20004 0.91337 0.84472 0.94089 1.84143 1.75154 1.15408 1.34272 1.22015 1.47054 0.93850 0.87415 0.87276 1.26733 0.95119 0.96676 1.03330 1.70293 1.41206 1.11248 1.31029 0.84639 0.79993 0.76701 0.74794 1.19942 1.17701 1.17825 1.21249 0.96467 1.01189 0.89957 0.87160 1.21975 0.94421 1.01126 1.00178 1.21555 0.98094 0.99413 0.81712 1.45502 1.24130 1.54921 1.11442 1.20218 0.80926 0.77154 0.90509 1.90746 1.66802 1.60402 1.31004 1.21715 1.02363 1.02055 0.90594 0.94956 0.89535 0.88668 0.82116 0.81703 0.82477 0.85428 0.91935 0.88794 0.92041 0.88960 0.88020 0.75769 0.88071 0.86579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.34 9.23 71.98 0.66 -3.67 16 2 C 0.09 2.43 2.13 30.59 0.07 2.50 16 3 H 0.06 1.97 7.16 -2.39 -0.02 1.96 16 4 O -0.34 -11.05 8.39 -56.79 -0.48 -11.53 16 5 C 0.50 22.04 7.86 70.23 0.55 22.59 16 6 O -0.53 -29.42 14.43 26.81 0.39 -29.03 16 7 C -0.24 -9.95 5.89 -20.00 -0.12 -10.07 16 8 C -0.01 -0.28 9.61 22.53 0.22 -0.06 16 9 C -0.20 -5.15 10.02 22.25 0.22 -4.93 16 10 C -0.03 -0.84 10.03 22.30 0.22 -0.62 16 11 C -0.26 -10.42 9.16 22.36 0.20 -10.22 16 12 C 0.16 7.68 6.66 22.92 0.15 7.84 16 13 O -0.19 -11.43 7.84 0.99 0.01 -11.42 16 14 C -0.43 -24.84 9.49 67.93 0.64 -24.20 16 15 H 0.11 5.63 5.21 -2.91 -0.02 5.61 16 16 C -0.02 -1.07 5.49 84.85 0.47 -0.61 16 17 N -0.90 -57.05 13.67 21.62 0.30 -56.75 16 18 Si 1.02 42.57 29.55 68.60 2.03 44.60 16 19 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 20 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 21 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 22 C -0.07 -1.31 2.06 -10.65 -0.02 -1.33 16 23 H 0.11 1.69 8.13 -2.39 -0.02 1.67 16 24 C -0.14 -2.35 5.26 30.68 0.16 -2.19 16 25 C 0.12 1.24 7.17 86.49 0.62 1.86 16 26 N -0.71 -10.71 5.45 -467.29 -2.55 -13.26 16 27 C 0.52 11.46 7.71 87.72 0.68 12.14 16 28 O -0.61 -18.55 17.78 -3.04 -0.05 -18.61 16 29 C -0.13 -2.46 4.67 29.71 0.14 -2.32 16 30 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.09 1.81 8.14 -2.39 -0.02 1.80 16 32 H 0.09 1.97 6.72 -2.38 -0.02 1.95 16 33 H 0.16 3.63 7.61 -2.91 -0.02 3.60 16 34 H 0.17 2.64 8.06 -2.91 -0.02 2.62 16 35 H 0.16 3.19 8.06 -2.91 -0.02 3.17 16 36 H 0.13 5.17 5.64 -2.91 -0.02 5.15 16 37 H 0.27 15.79 8.31 -92.70 -0.77 15.02 16 38 H 0.09 1.68 7.52 -2.39 -0.02 1.67 16 39 H 0.06 1.21 8.12 -2.39 -0.02 1.19 16 40 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 42 H 0.41 5.16 8.80 -92.71 -0.82 4.35 16 43 H 0.10 2.05 8.10 -2.39 -0.02 2.03 16 44 H 0.12 2.02 7.10 -2.39 -0.02 2.00 16 Total: -1.00 -86.53 367.97 4.74 -81.79 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: 0.23 Total: 27.51 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: 4.87 Total: -13.31 kcal Atomic # 7 Polarization: -67.76 SS G_CDS: -2.25 Total: -70.01 kcal Atomic # 8 Polarization: -70.45 SS G_CDS: -0.14 Total: -70.58 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -86.53 4.74 -81.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646922937.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.638 kcal (2) G-P(sol) polarization free energy of solvation -86.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds