Wall clock time and date at job start Tue Mar 31 2020 18:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47104 * 2 1 4 4 O 1.45198 * 109.47251 * 120.00103 * 2 1 3 5 5 C 1.34763 * 117.00141 * 270.00359 * 4 2 1 6 6 O 1.21516 * 119.99684 * 359.97438 * 5 4 2 7 7 C 1.47392 * 120.00313 * 179.97438 * 5 4 2 8 8 C 1.39725 * 120.20067 * 359.97438 * 7 5 4 9 9 C 1.37807 * 119.91228 * 179.97438 * 8 7 5 10 10 C 1.38593 * 120.33312 * 0.02562 * 9 8 7 11 11 C 1.38017 * 120.41227 * 359.97438 * 10 9 8 12 12 C 1.38834 * 120.08068 * 0.27209 * 11 10 9 13 13 O 1.35507 * 120.16923 * 179.70017 * 12 11 10 14 14 C 1.34809 * 117.00016 * 354.40027 * 13 12 11 15 15 H 1.07999 * 119.99864 * 5.04970 * 14 13 12 16 16 C 1.38701 * 120.00250 * 185.05011 * 14 13 12 17 17 N 1.31511 * 120.00110 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99872 * 359.97438 * 16 14 13 19 19 H 1.48505 * 109.47100 * 90.00094 * 18 16 14 20 20 H 1.48501 * 109.47412 * 210.00112 * 18 16 14 21 21 H 1.48504 * 109.47213 * 329.99939 * 18 16 14 22 22 C 1.52998 * 109.47610 * 240.00029 * 2 1 3 23 23 H 1.09004 * 109.67103 * 300.50321 * 22 2 1 24 24 C 1.53338 * 109.68071 * 179.97438 * 22 2 1 25 25 C 1.52918 * 108.67659 * 172.73493 * 24 22 2 26 26 N 1.45745 * 110.48707 * 50.75634 * 25 24 22 27 27 C 1.33356 * 124.10862 * 340.94792 * 26 25 24 28 28 O 1.21283 * 118.24576 * 182.17917 * 27 26 25 29 29 C 1.50174 * 123.50760 * 2.17442 * 27 26 25 30 30 H 1.09005 * 109.47135 * 59.99880 * 1 2 3 31 31 H 1.09000 * 109.47104 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47182 * 299.99822 * 1 2 3 33 33 H 1.08001 * 120.04817 * 0.02562 * 8 7 5 34 34 H 1.08002 * 119.83749 * 180.02562 * 9 8 7 35 35 H 1.07997 * 119.79311 * 180.02562 * 10 9 8 36 36 H 1.08001 * 119.96311 * 179.97438 * 11 10 9 37 37 H 0.97003 * 119.99860 * 180.02562 * 17 16 14 38 38 H 1.09001 * 109.60248 * 292.49678 * 24 22 2 39 39 H 1.09001 * 109.59916 * 52.81718 * 24 22 2 40 40 H 1.09007 * 109.29744 * 171.07072 * 25 24 22 41 41 H 1.09002 * 109.30284 * 290.64462 * 25 24 22 42 42 H 0.97005 * 117.94739 * 160.92334 * 26 25 24 43 43 H 1.08994 * 109.41549 * 222.31786 * 29 27 26 44 44 H 1.08999 * 109.38183 * 102.58086 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2179 0.0669 2.2855 6 8 1.9976 1.2616 2.2545 7 6 2.7080 -0.5602 3.5260 8 6 2.9621 -1.9336 3.5664 9 6 3.4208 -2.5136 4.7293 10 6 3.6312 -1.7416 5.8609 11 6 3.3847 -0.3839 5.8361 12 6 2.9174 0.2175 4.6753 13 8 2.6690 1.5493 4.6507 14 6 2.7844 2.2150 5.8173 15 1 3.1423 1.7028 6.6982 16 6 2.4433 3.5577 5.8863 17 7 2.5564 4.2072 7.0243 18 14 1.8248 4.4437 4.3626 19 1 0.3462 4.3277 4.2885 20 1 2.2058 5.8772 4.4346 21 1 2.4308 3.8307 3.1533 22 6 2.0401 -0.7212 -1.2492 23 1 1.6712 -1.7469 -1.2570 24 6 3.5735 -0.7234 -1.2543 25 6 4.0581 -1.6014 -2.4086 26 7 3.3997 -1.2192 -3.6514 27 6 2.2680 -0.5164 -3.7127 28 8 1.7905 -0.2914 -4.8047 29 6 1.5532 0.0113 -2.5020 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 2.8001 -2.5396 2.6873 34 1 3.6172 -3.5752 4.7591 35 1 3.9912 -2.2052 6.7674 36 1 3.5508 0.2108 6.7222 37 1 2.3175 5.1461 7.0726 38 1 3.9402 0.2941 -1.3897 39 1 3.9417 -1.1220 -0.3089 40 1 5.1361 -1.4854 -2.5215 41 1 3.8291 -2.6442 -2.1889 42 1 3.8105 -1.4930 -4.4865 43 1 0.4806 -0.1438 -2.6183 44 1 1.7545 1.0775 -2.3992 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646922938.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:42 Heat of formation + Delta-G solvation = -131.429397 kcal Electronic energy + Delta-G solvation = -28848.538265 eV Core-core repulsion = 24731.404052 eV Total energy + Delta-G solvation = -4117.134213 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.75944 -40.04728 -39.02052 -37.19522 -36.65785 -35.83628 -34.15292 -32.58026 -31.03608 -30.42263 -29.51548 -29.30198 -25.76199 -25.39114 -23.87792 -23.10557 -21.80144 -20.97470 -20.30906 -19.50559 -18.06486 -17.92860 -17.51934 -17.01920 -16.38738 -16.08050 -15.67191 -15.45820 -14.86897 -14.76429 -14.43420 -14.32664 -14.12471 -13.90367 -13.81883 -13.70463 -13.42395 -13.06352 -12.85104 -12.47087 -12.29083 -12.25008 -12.10025 -11.71139 -11.51020 -11.36765 -11.31861 -11.20640 -10.95870 -10.83869 -10.78827 -10.41984 -10.16934 -10.01357 -9.85027 -9.44449 -9.39807 -9.00173 -8.51146 -7.61325 -6.58619 -4.24033 1.38374 2.11198 2.37256 2.92753 3.02448 3.19162 3.23641 3.29119 3.54304 4.17490 4.23496 4.28392 4.37225 4.42013 4.49497 4.60607 4.92457 4.95039 4.97648 4.98086 5.10445 5.17156 5.24756 5.31548 5.39573 5.46600 5.51916 5.55029 5.65937 5.73845 5.79628 5.89837 5.95872 5.99834 6.12747 6.30794 6.45106 6.47760 6.76049 6.78848 7.00708 7.01473 7.06367 7.38386 7.58413 7.82762 7.92308 8.43342 8.75733 9.36306 10.46131 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.013068 B = 0.003485 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.119693 B = 8032.067449 C = 9530.158358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.092 3.908 3 H 0.087 0.913 4 O -0.356 6.356 5 C 0.505 3.495 6 O -0.492 6.492 7 C -0.217 4.217 8 C -0.018 4.018 9 C -0.226 4.226 10 C -0.043 4.043 11 C -0.229 4.229 12 C 0.203 3.797 13 O -0.166 6.166 14 C -0.397 4.397 15 H 0.111 0.889 16 C 0.073 3.927 17 N -0.864 5.864 18 Si 0.900 3.100 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.240 1.240 22 C -0.085 4.085 23 H 0.091 0.909 24 C -0.137 4.137 25 C 0.111 3.889 26 N -0.721 5.721 27 C 0.525 3.475 28 O -0.561 6.561 29 C -0.131 4.131 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.126 0.874 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.140 0.860 37 H 0.283 0.717 38 H 0.074 0.926 39 H 0.097 0.903 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.398 0.602 43 H 0.107 0.893 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.009 -13.283 -13.785 19.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.037 3.963 3 H 0.105 0.895 4 O -0.275 6.275 5 C 0.352 3.648 6 O -0.380 6.380 7 C -0.219 4.219 8 C -0.036 4.036 9 C -0.245 4.245 10 C -0.061 4.061 11 C -0.248 4.248 12 C 0.145 3.855 13 O -0.065 6.065 14 C -0.472 4.472 15 H 0.128 0.872 16 C -0.133 4.133 17 N -0.499 5.499 18 Si 0.724 3.276 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.163 1.163 22 C -0.104 4.104 23 H 0.109 0.891 24 C -0.174 4.174 25 C -0.013 4.013 26 N -0.373 5.373 27 C 0.312 3.688 28 O -0.440 6.440 29 C -0.170 4.170 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.144 0.856 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.158 0.842 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.116 0.884 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.233 0.767 43 H 0.125 0.875 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.483 -12.290 -14.210 18.846 hybrid contribution -0.030 0.443 -0.465 0.643 sum 1.453 -11.847 -14.675 18.916 Atomic orbital electron populations 1.22251 0.94419 1.02998 1.03328 1.22519 0.94377 0.97216 0.82179 0.89533 1.86557 1.78282 1.42397 1.20236 1.21072 0.75300 0.85281 0.83191 1.90911 1.48035 1.15546 1.83526 1.18042 1.19387 0.93717 0.90792 1.20951 0.92968 0.92081 0.97607 1.20619 1.10505 0.99429 0.93940 1.21040 0.94430 0.93229 0.97446 1.21245 1.08656 0.95604 0.99270 1.18994 0.90881 0.83739 0.91877 1.83744 1.73269 1.14909 1.34615 1.20943 1.45596 0.94065 0.86560 0.87223 1.24510 0.95167 0.95486 0.98181 1.69627 1.44211 1.11149 1.24952 0.86212 0.80047 0.77697 0.83622 1.19805 1.21030 1.16267 1.21331 0.95887 1.00917 0.92223 0.89091 1.21962 0.95105 1.01171 0.99195 1.21425 0.97284 0.98962 0.83621 1.45523 1.25583 1.55930 1.10246 1.20084 0.80414 0.77300 0.91024 1.90767 1.65361 1.58430 1.29413 1.21742 1.01880 1.02175 0.91242 0.90867 0.91559 0.91419 0.85576 0.86745 0.86631 0.84205 0.90640 0.90764 0.88443 0.90250 0.91243 0.76651 0.87507 0.87721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.96 9.24 37.16 0.34 -1.62 16 2 C 0.09 1.14 2.12 -26.73 -0.06 1.08 16 3 H 0.09 1.22 7.16 -51.93 -0.37 0.85 16 4 O -0.36 -5.29 8.37 -40.66 -0.34 -5.63 16 5 C 0.51 9.75 7.86 34.46 0.27 10.02 16 6 O -0.49 -11.30 14.43 -26.59 -0.38 -11.68 16 7 C -0.22 -4.23 5.89 -104.83 -0.62 -4.84 16 8 C -0.02 -0.28 9.61 -39.18 -0.38 -0.65 16 9 C -0.23 -3.33 10.02 -39.61 -0.40 -3.72 16 10 C -0.04 -0.69 10.03 -39.53 -0.40 -1.09 16 11 C -0.23 -4.57 9.16 -39.44 -0.36 -4.93 16 12 C 0.20 4.56 6.66 -38.57 -0.26 4.30 16 13 O -0.17 -4.34 6.67 -21.00 -0.14 -4.48 16 14 C -0.40 -10.89 9.95 30.90 0.31 -10.58 16 15 H 0.11 2.99 5.44 -52.49 -0.29 2.71 16 16 C 0.07 2.02 5.49 -17.52 -0.10 1.92 16 17 N -0.86 -24.31 13.96 55.48 0.77 -23.53 16 18 Si 0.90 22.23 28.62 -169.99 -4.86 17.36 16 19 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.24 -6.18 7.11 56.52 0.40 -5.78 16 22 C -0.08 -0.77 2.06 -90.41 -0.19 -0.96 16 23 H 0.09 0.77 8.13 -51.93 -0.42 0.34 16 24 C -0.14 -1.13 5.26 -26.60 -0.14 -1.27 16 25 C 0.11 0.69 7.17 -4.49 -0.03 0.66 16 26 N -0.72 -5.77 5.45 -61.39 -0.33 -6.10 16 27 C 0.52 5.65 7.71 -11.87 -0.09 5.56 16 28 O -0.56 -8.31 17.78 5.55 0.10 -8.21 16 29 C -0.13 -1.19 4.69 -28.10 -0.13 -1.32 16 30 H 0.07 0.68 6.74 -51.93 -0.35 0.33 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.13 1.61 7.61 -52.49 -0.40 1.21 16 34 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 36 H 0.14 2.90 5.64 -52.49 -0.30 2.60 16 37 H 0.28 7.37 8.31 -40.82 -0.34 7.03 16 38 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 39 H 0.10 0.87 7.50 -51.93 -0.39 0.48 16 40 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.40 2.75 8.80 -40.82 -0.36 2.39 16 43 H 0.11 0.90 7.10 -51.93 -0.37 0.53 16 44 H 0.10 0.93 8.10 -51.93 -0.42 0.51 16 LS Contribution 366.85 15.07 5.53 5.53 Total: -1.00 -33.09 366.85 -7.64 -40.72 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -5.76 Total: 3.47 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -2.22 Total: -7.45 kcal Atomic # 7 Polarization: -30.08 SS G_CDS: 0.44 Total: -29.64 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -0.77 Total: -30.00 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.86 Total: 17.36 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.09 -7.64 -40.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646922938.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.705 kcal (2) G-P(sol) polarization free energy of solvation -33.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds