Wall clock time and date at job start Tue Mar 31 2020 18:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47104 * 2 1 4 4 O 1.45198 * 109.47251 * 120.00103 * 2 1 3 5 5 C 1.34763 * 117.00141 * 270.00359 * 4 2 1 6 6 O 1.21516 * 119.99684 * 359.97438 * 5 4 2 7 7 C 1.47392 * 120.00313 * 179.97438 * 5 4 2 8 8 C 1.39725 * 120.20067 * 359.97438 * 7 5 4 9 9 C 1.37807 * 119.91228 * 179.97438 * 8 7 5 10 10 C 1.38593 * 120.33312 * 0.02562 * 9 8 7 11 11 C 1.38017 * 120.41227 * 359.97438 * 10 9 8 12 12 C 1.38834 * 120.08068 * 0.27209 * 11 10 9 13 13 O 1.35507 * 120.16923 * 179.70017 * 12 11 10 14 14 C 1.34809 * 117.00016 * 354.40027 * 13 12 11 15 15 H 1.07999 * 119.99864 * 5.04970 * 14 13 12 16 16 C 1.38701 * 120.00250 * 185.05011 * 14 13 12 17 17 N 1.31511 * 120.00110 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99872 * 359.97438 * 16 14 13 19 19 H 1.48505 * 109.47100 * 90.00094 * 18 16 14 20 20 H 1.48501 * 109.47412 * 210.00112 * 18 16 14 21 21 H 1.48504 * 109.47213 * 329.99939 * 18 16 14 22 22 C 1.52998 * 109.47610 * 240.00029 * 2 1 3 23 23 H 1.09004 * 109.67103 * 300.50321 * 22 2 1 24 24 C 1.53338 * 109.68071 * 179.97438 * 22 2 1 25 25 C 1.52918 * 108.67659 * 172.73493 * 24 22 2 26 26 N 1.45745 * 110.48707 * 50.75634 * 25 24 22 27 27 C 1.33356 * 124.10862 * 340.94792 * 26 25 24 28 28 O 1.21283 * 118.24576 * 182.17917 * 27 26 25 29 29 C 1.50174 * 123.50760 * 2.17442 * 27 26 25 30 30 H 1.09005 * 109.47135 * 59.99880 * 1 2 3 31 31 H 1.09000 * 109.47104 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47182 * 299.99822 * 1 2 3 33 33 H 1.08001 * 120.04817 * 0.02562 * 8 7 5 34 34 H 1.08002 * 119.83749 * 180.02562 * 9 8 7 35 35 H 1.07997 * 119.79311 * 180.02562 * 10 9 8 36 36 H 1.08001 * 119.96311 * 179.97438 * 11 10 9 37 37 H 0.97003 * 119.99860 * 180.02562 * 17 16 14 38 38 H 1.09001 * 109.60248 * 292.49678 * 24 22 2 39 39 H 1.09001 * 109.59916 * 52.81718 * 24 22 2 40 40 H 1.09007 * 109.29744 * 171.07072 * 25 24 22 41 41 H 1.09002 * 109.30284 * 290.64462 * 25 24 22 42 42 H 0.97005 * 117.94739 * 160.92334 * 26 25 24 43 43 H 1.08994 * 109.41549 * 222.31786 * 29 27 26 44 44 H 1.08999 * 109.38183 * 102.58086 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2179 0.0669 2.2855 6 8 1.9976 1.2616 2.2545 7 6 2.7080 -0.5602 3.5260 8 6 2.9621 -1.9336 3.5664 9 6 3.4208 -2.5136 4.7293 10 6 3.6312 -1.7416 5.8609 11 6 3.3847 -0.3839 5.8361 12 6 2.9174 0.2175 4.6753 13 8 2.6690 1.5493 4.6507 14 6 2.7844 2.2150 5.8173 15 1 3.1423 1.7028 6.6982 16 6 2.4433 3.5577 5.8863 17 7 2.5564 4.2072 7.0243 18 14 1.8248 4.4437 4.3626 19 1 0.3462 4.3277 4.2885 20 1 2.2058 5.8772 4.4346 21 1 2.4308 3.8307 3.1533 22 6 2.0401 -0.7212 -1.2492 23 1 1.6712 -1.7469 -1.2570 24 6 3.5735 -0.7234 -1.2543 25 6 4.0581 -1.6014 -2.4086 26 7 3.3997 -1.2192 -3.6514 27 6 2.2680 -0.5164 -3.7127 28 8 1.7905 -0.2914 -4.8047 29 6 1.5532 0.0113 -2.5020 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 2.8001 -2.5396 2.6873 34 1 3.6172 -3.5752 4.7591 35 1 3.9912 -2.2052 6.7674 36 1 3.5508 0.2108 6.7222 37 1 2.3175 5.1461 7.0726 38 1 3.9402 0.2941 -1.3897 39 1 3.9417 -1.1220 -0.3089 40 1 5.1361 -1.4854 -2.5215 41 1 3.8291 -2.6442 -2.1889 42 1 3.8105 -1.4930 -4.4865 43 1 0.4806 -0.1438 -2.6183 44 1 1.7545 1.0775 -2.3992 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646922938.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:41 Heat of formation + Delta-G solvation = -152.815669 kcal Electronic energy + Delta-G solvation = -28849.465644 eV Core-core repulsion = 24731.404052 eV Total energy + Delta-G solvation = -4118.061591 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.83237 -41.28113 -40.50020 -38.37830 -38.12815 -37.00334 -35.08409 -34.55210 -32.38577 -31.31989 -30.83523 -30.34621 -27.41791 -26.50595 -25.16650 -23.91469 -23.26898 -22.23001 -21.52680 -20.30607 -19.86777 -19.38152 -18.49757 -18.31819 -17.60599 -17.09179 -16.92068 -16.59131 -16.35114 -15.97744 -15.76542 -15.56603 -15.45393 -15.25952 -15.08472 -14.75365 -14.37736 -14.30763 -14.13914 -14.07916 -13.95117 -13.24323 -13.14135 -12.86035 -12.85104 -12.66583 -12.58671 -12.40654 -12.09239 -12.07732 -12.04562 -11.77209 -11.63578 -11.51718 -11.16078 -10.99147 -10.81513 -10.07920 -9.94880 -9.20267 -8.60181 -6.29762 -0.08021 0.64126 1.24488 1.28786 1.54114 1.55021 1.67236 1.72479 2.25953 2.33452 2.72684 2.94108 3.11010 3.35304 3.54916 3.64126 3.77689 3.93008 4.05591 4.11570 4.14174 4.23616 4.25932 4.41606 4.42405 4.48545 4.53680 4.66661 4.72869 4.78960 4.82681 4.88648 4.89590 5.05153 5.10953 5.15851 5.22873 5.28497 5.45027 5.52572 5.61787 5.70811 5.81412 5.81864 6.13345 6.29412 6.75477 6.96405 7.16501 7.51816 8.49904 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.013068 B = 0.003485 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.119693 B = 8032.067449 C = 9530.158358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.087 3.913 3 H 0.064 0.936 4 O -0.337 6.337 5 C 0.508 3.492 6 O -0.536 6.536 7 C -0.224 4.224 8 C -0.009 4.009 9 C -0.193 4.193 10 C -0.031 4.031 11 C -0.253 4.253 12 C 0.169 3.831 13 O -0.209 6.209 14 C -0.403 4.403 15 H 0.095 0.905 16 C 0.028 3.972 17 N -0.908 5.908 18 Si 0.952 3.048 19 H -0.275 1.275 20 H -0.266 1.266 21 H -0.263 1.263 22 C -0.071 4.071 23 H 0.110 0.890 24 C -0.139 4.139 25 C 0.114 3.886 26 N -0.710 5.710 27 C 0.523 3.477 28 O -0.608 6.608 29 C -0.127 4.127 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.036 0.964 33 H 0.168 0.832 34 H 0.168 0.832 35 H 0.155 0.845 36 H 0.119 0.881 37 H 0.286 0.714 38 H 0.062 0.938 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.091 0.909 42 H 0.405 0.595 43 H 0.115 0.885 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.713 -17.915 -15.500 23.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.032 3.968 3 H 0.082 0.918 4 O -0.255 6.255 5 C 0.356 3.644 6 O -0.426 6.426 7 C -0.227 4.227 8 C -0.026 4.026 9 C -0.211 4.211 10 C -0.049 4.049 11 C -0.272 4.272 12 C 0.116 3.884 13 O -0.113 6.113 14 C -0.479 4.479 15 H 0.113 0.887 16 C -0.173 4.173 17 N -0.548 5.548 18 Si 0.776 3.224 19 H -0.201 1.201 20 H -0.191 1.191 21 H -0.187 1.187 22 C -0.090 4.090 23 H 0.128 0.872 24 C -0.177 4.177 25 C -0.009 4.009 26 N -0.361 5.361 27 C 0.311 3.689 28 O -0.491 6.491 29 C -0.167 4.167 30 H 0.113 0.887 31 H 0.104 0.896 32 H 0.055 0.945 33 H 0.185 0.815 34 H 0.186 0.814 35 H 0.172 0.828 36 H 0.137 0.863 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.114 0.886 40 H 0.119 0.881 41 H 0.109 0.891 42 H 0.241 0.759 43 H 0.134 0.866 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.226 -17.008 -15.928 23.408 hybrid contribution -0.159 1.351 -0.065 1.362 sum 2.068 -15.657 -15.994 22.477 Atomic orbital electron populations 1.22268 0.93559 1.04088 1.02919 1.22810 0.95178 0.96575 0.82269 0.91817 1.86515 1.77676 1.41420 1.19852 1.21181 0.74306 0.84798 0.84141 1.90908 1.49734 1.17624 1.84379 1.18485 1.18829 0.95381 0.89990 1.21469 0.91249 0.90217 0.99715 1.21289 1.06022 1.01697 0.92141 1.21530 0.92284 0.91310 0.99765 1.21311 1.10174 0.97636 0.98049 1.19699 0.91478 0.83258 0.93983 1.83732 1.77104 1.16793 1.33624 1.20893 1.45564 0.94399 0.87046 0.88745 1.25040 0.96088 0.96206 0.99966 1.69674 1.47459 1.11634 1.26004 0.85460 0.79046 0.77532 0.80354 1.20100 1.19123 1.18695 1.21260 0.96523 1.01188 0.90020 0.87224 1.21979 0.94370 1.01188 1.00165 1.21570 0.98218 0.99361 0.81730 1.45530 1.24577 1.54529 1.11456 1.20261 0.80877 0.77210 0.90582 1.90751 1.66865 1.60485 1.30967 1.21715 1.02349 1.02057 0.90580 0.88698 0.89636 0.94491 0.81487 0.81425 0.82786 0.86286 0.90365 0.91890 0.88558 0.88080 0.89062 0.75851 0.86639 0.87899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.66 9.24 71.98 0.67 -3.00 16 2 C 0.09 2.02 2.12 30.59 0.06 2.09 16 3 H 0.06 1.82 7.16 -2.39 -0.02 1.81 16 4 O -0.34 -9.32 8.37 -56.73 -0.47 -9.80 16 5 C 0.51 19.47 7.86 70.23 0.55 20.02 16 6 O -0.54 -25.56 14.43 26.78 0.39 -25.17 16 7 C -0.22 -8.46 5.89 -20.00 -0.12 -8.58 16 8 C -0.01 -0.23 9.61 22.53 0.22 -0.01 16 9 C -0.19 -4.45 10.02 22.25 0.22 -4.23 16 10 C -0.03 -0.87 10.03 22.30 0.22 -0.65 16 11 C -0.25 -10.11 9.16 22.36 0.20 -9.90 16 12 C 0.17 7.76 6.66 22.92 0.15 7.91 16 13 O -0.21 -11.59 6.67 1.04 0.01 -11.58 16 14 C -0.40 -23.68 9.95 67.93 0.68 -23.00 16 15 H 0.10 5.60 5.44 -2.91 -0.02 5.58 16 16 C 0.03 1.64 5.49 84.85 0.47 2.10 16 17 N -0.91 -54.07 13.96 21.62 0.30 -53.77 16 18 Si 0.95 48.83 28.62 68.60 1.96 50.79 16 19 H -0.28 -13.95 7.11 99.48 0.71 -13.24 16 20 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 21 H -0.26 -14.27 7.11 99.48 0.71 -13.57 16 22 C -0.07 -1.10 2.06 -10.66 -0.02 -1.12 16 23 H 0.11 1.36 8.13 -2.38 -0.02 1.34 16 24 C -0.14 -1.92 5.26 30.68 0.16 -1.76 16 25 C 0.11 0.98 7.17 86.49 0.62 1.60 16 26 N -0.71 -9.41 5.45 -467.32 -2.55 -11.96 16 27 C 0.52 10.35 7.71 87.71 0.68 11.03 16 28 O -0.61 -17.54 17.78 -3.04 -0.05 -17.59 16 29 C -0.13 -2.09 4.69 29.71 0.14 -1.95 16 30 H 0.09 1.60 6.74 -2.38 -0.02 1.59 16 31 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.17 3.10 7.61 -2.91 -0.02 3.08 16 34 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 35 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 36 H 0.12 5.22 5.64 -2.91 -0.02 5.20 16 37 H 0.29 15.72 8.31 -92.71 -0.77 14.95 16 38 H 0.06 1.02 8.12 -2.39 -0.02 1.01 16 39 H 0.10 1.39 7.50 -2.39 -0.02 1.37 16 40 H 0.10 0.52 8.14 -2.38 -0.02 0.50 16 41 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 42 H 0.41 4.55 8.80 -92.70 -0.82 3.73 16 43 H 0.12 1.71 7.10 -2.39 -0.02 1.69 16 44 H 0.10 1.75 8.10 -2.39 -0.02 1.73 16 Total: -1.00 -79.94 366.85 4.72 -75.22 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 0.23 Total: 13.33 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: 4.90 Total: -9.46 kcal Atomic # 7 Polarization: -63.49 SS G_CDS: -2.24 Total: -65.73 kcal Atomic # 8 Polarization: -64.01 SS G_CDS: -0.14 Total: -64.14 kcal Atomic # 14 Polarization: 48.83 SS G_CDS: 1.96 Total: 50.79 kcal Total: -79.94 4.72 -75.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646922938.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.595 kcal (2) G-P(sol) polarization free energy of solvation -79.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds