Wall clock time and date at job start Tue Mar 31 2020 18:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21269 * 120.00024 * 2 1 4 4 N 1.34779 * 119.99615 * 180.02562 * 2 1 3 5 5 C 1.39315 * 119.99687 * 185.27543 * 4 2 1 6 6 C 1.39216 * 119.89803 * 33.60212 * 5 4 2 7 7 C 1.37083 * 120.09759 * 180.02562 * 6 5 4 8 8 C 1.40049 * 119.90314 * 359.97438 * 7 6 5 9 9 C 1.46850 * 120.10508 * 180.02562 * 8 7 6 10 10 O 1.21299 * 119.99680 * 359.97438 * 9 8 7 11 11 C 1.50698 * 119.99928 * 179.97438 * 9 8 7 12 12 H 1.08996 * 109.47642 * 319.99775 * 11 9 8 13 13 C 1.52996 * 109.47109 * 80.00662 * 11 9 8 14 14 O 1.45204 * 109.46781 * 200.00010 * 11 9 8 15 15 C 1.34227 * 116.99987 * 150.00411 * 14 11 9 16 16 O 1.20830 * 120.00245 * 359.97438 * 15 14 11 17 17 C 1.50707 * 120.00162 * 180.02562 * 15 14 11 18 18 H 1.08994 * 109.47006 * 59.99538 * 17 15 14 19 19 C 1.53005 * 109.46681 * 299.99536 * 17 15 14 20 20 C 1.50699 * 109.47066 * 180.02562 * 17 15 14 21 21 H 1.07999 * 119.99911 * 359.97438 * 20 17 15 22 22 C 1.37874 * 119.99867 * 179.97438 * 20 17 15 23 23 N 1.31518 * 120.00014 * 359.97438 * 22 20 17 24 24 Si 1.86800 * 120.00063 * 179.97438 * 22 20 17 25 25 H 1.48503 * 109.47086 * 60.00023 * 24 22 20 26 26 H 1.48497 * 109.47259 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47059 * 299.99989 * 24 22 20 28 28 C 1.40064 * 119.79785 * 0.27434 * 8 7 6 29 29 C 1.37085 * 119.89582 * 359.44697 * 28 8 7 30 30 H 1.09000 * 109.47498 * 240.00227 * 1 2 3 31 31 H 1.09008 * 109.47059 * 0.02562 * 1 2 3 32 32 H 1.09003 * 109.47411 * 119.99579 * 1 2 3 33 33 H 0.97003 * 119.99899 * 5.28248 * 4 2 1 34 34 H 1.07998 * 119.95161 * 359.97438 * 6 5 4 35 35 H 1.08011 * 120.04769 * 179.97438 * 7 6 5 36 36 H 1.09003 * 109.47061 * 299.99489 * 13 11 9 37 37 H 1.08996 * 109.47592 * 59.99083 * 13 11 9 38 38 H 1.09001 * 109.47416 * 180.02562 * 13 11 9 39 39 H 1.09004 * 109.47078 * 300.00197 * 19 17 15 40 40 H 1.08995 * 109.47005 * 179.97438 * 19 17 15 41 41 H 1.09001 * 109.47305 * 60.00048 * 19 17 15 42 42 H 0.97002 * 119.99883 * 180.02562 * 23 22 20 43 43 H 1.07996 * 120.04662 * 179.70464 * 28 8 7 44 44 H 1.07990 * 119.94942 * 180.29377 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 3.5695 -1.1699 0.1104 6 6 4.2063 -0.1981 0.8774 7 6 5.5725 -0.1965 0.9889 8 6 6.3280 -1.1747 0.3304 9 6 7.7918 -1.1776 0.4473 10 8 8.3485 -0.3314 1.1147 11 6 8.6023 -2.2317 -0.2619 12 1 8.0930 -3.1925 -0.1882 13 6 8.7590 -1.8492 -1.7350 14 8 9.9133 -2.3303 0.3545 15 6 10.5151 -3.5295 0.3181 16 8 9.9646 -4.4660 -0.2109 17 6 11.8771 -3.7082 0.9381 18 1 11.8265 -3.4711 2.0007 19 6 12.8757 -2.7726 0.2537 20 6 12.3256 -5.1362 0.7622 21 1 11.6880 -5.8436 0.2528 22 6 13.5498 -5.5394 1.2515 23 7 14.3264 -4.6778 1.8714 24 14 14.1055 -7.3096 1.0342 25 1 14.1738 -7.6327 -0.4137 26 1 15.4481 -7.4854 1.6439 27 1 13.1367 -8.2177 1.6989 28 6 5.6834 -2.1474 -0.4444 29 6 4.3163 -2.1446 -0.5456 30 1 -0.3634 -0.5138 0.8900 31 1 -0.3633 1.0277 -0.0005 32 1 -0.3634 -0.5138 -0.8900 33 1 1.6988 -2.0055 -0.0782 34 1 3.6230 0.5562 1.3846 35 1 6.0657 0.5581 1.5839 36 1 7.7749 -1.7751 -2.1978 37 1 9.2683 -0.8884 -1.8088 38 1 9.3448 -2.6118 -2.2481 39 1 12.9262 -3.0098 -0.8091 40 1 13.8606 -2.9015 0.7023 41 1 12.5515 -1.7397 0.3804 42 1 15.1879 -4.9615 2.2153 43 1 6.2623 -2.9007 -0.9579 44 1 3.8181 -2.8970 -1.1389 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647271381.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:54 Heat of formation + Delta-G solvation = -134.428949 kcal Electronic energy + Delta-G solvation = -27619.462499 eV Core-core repulsion = 23502.198215 eV Total energy + Delta-G solvation = -4117.264283 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.10449 -40.24319 -39.25199 -38.10539 -35.78216 -35.27230 -33.88205 -32.49246 -31.35222 -31.10185 -30.38653 -29.11942 -25.36845 -25.15980 -23.95068 -23.39170 -22.33204 -21.12293 -20.07910 -19.51730 -18.39061 -17.50654 -17.05194 -16.83071 -16.15429 -15.97038 -15.80941 -15.41481 -15.13842 -14.81604 -14.60714 -14.34155 -14.28200 -13.87125 -13.65812 -13.40492 -13.18790 -13.03559 -12.91335 -12.69239 -12.59530 -12.43165 -12.27486 -11.61432 -11.51601 -11.31725 -11.02118 -10.83597 -10.82126 -10.68100 -10.45424 -10.37027 -10.24499 -10.04983 -9.56745 -9.36047 -9.11481 -9.03469 -8.55767 -8.43228 -6.08570 -4.14582 0.32996 1.09328 1.87983 2.34371 2.51263 3.14563 3.26142 3.33236 3.36138 3.41725 3.53005 4.11141 4.11404 4.42784 4.45381 4.56158 4.63968 4.74071 4.92013 4.98210 5.05325 5.05978 5.12726 5.21405 5.24402 5.27655 5.48234 5.66394 5.74627 5.81460 5.85616 6.02051 6.04389 6.16248 6.20578 6.55837 6.70321 6.78766 6.90644 6.91372 7.17334 7.45818 7.49408 7.52177 7.76332 7.96008 8.15369 8.80987 8.93618 9.50588 10.98678 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.028418 B = 0.002090 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.047718 B =13392.528986 C =13839.738285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.509 3.491 3 O -0.519 6.519 4 N -0.675 5.675 5 C 0.174 3.826 6 C -0.135 4.135 7 C -0.037 4.037 8 C -0.177 4.177 9 C 0.399 3.601 10 O -0.425 6.425 11 C 0.038 3.962 12 H 0.106 0.894 13 C -0.161 4.161 14 O -0.342 6.342 15 C 0.466 3.534 16 O -0.517 6.517 17 C 0.058 3.942 18 H 0.065 0.935 19 C -0.134 4.134 20 C -0.513 4.513 21 H 0.075 0.925 22 C 0.061 3.939 23 N -0.891 5.891 24 Si 0.906 3.094 25 H -0.276 1.276 26 H -0.287 1.287 27 H -0.276 1.276 28 C -0.052 4.052 29 C -0.157 4.157 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.414 0.586 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.031 0.969 40 H 0.096 0.904 41 H 0.025 0.975 42 H 0.264 0.736 43 H 0.140 0.860 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.458 7.073 -5.164 28.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.298 3.702 3 O -0.393 6.393 4 N -0.321 5.321 5 C 0.079 3.921 6 C -0.155 4.155 7 C -0.056 4.056 8 C -0.178 4.178 9 C 0.274 3.726 10 O -0.297 6.297 11 C -0.018 4.018 12 H 0.124 0.876 13 C -0.219 4.219 14 O -0.260 6.260 15 C 0.311 3.689 16 O -0.404 6.404 17 C 0.039 3.961 18 H 0.083 0.917 19 C -0.191 4.191 20 C -0.551 4.551 21 H 0.093 0.907 22 C -0.140 4.140 23 N -0.529 5.529 24 Si 0.733 3.267 25 H -0.201 1.201 26 H -0.212 1.212 27 H -0.201 1.201 28 C -0.071 4.071 29 C -0.178 4.178 30 H 0.112 0.888 31 H 0.116 0.884 32 H 0.111 0.889 33 H 0.251 0.749 34 H 0.157 0.843 35 H 0.157 0.843 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.050 0.950 40 H 0.115 0.885 41 H 0.044 0.956 42 H 0.074 0.926 43 H 0.158 0.842 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -26.817 8.061 -4.871 28.423 hybrid contribution -0.131 -1.569 -0.291 1.601 sum -26.948 6.492 -5.162 28.196 Atomic orbital electron populations 1.21943 0.90351 1.06238 1.04743 1.21097 0.91065 0.83041 0.75036 1.90782 1.70594 1.31157 1.46800 1.43578 1.05311 1.10298 1.72877 1.18001 0.82827 0.96420 0.94837 1.20958 0.94630 1.00177 0.99776 1.21175 0.92981 0.96071 0.95335 1.20366 0.94330 0.99354 1.03792 1.22229 0.87938 0.84082 0.78332 1.90553 1.73584 1.34381 1.31213 1.22762 0.85133 0.99950 0.93986 0.87620 1.22090 1.03252 1.03700 0.92832 1.86814 1.29818 1.37187 1.72181 1.25522 0.89070 0.78512 0.75833 1.90472 1.65656 1.41397 1.42867 1.18780 0.82300 0.98189 0.96783 0.91715 1.21735 1.03091 0.95259 0.99063 1.21076 1.03011 0.93184 1.37846 0.90671 1.24946 0.96214 0.98120 0.94749 1.69879 1.11046 1.34247 1.37745 0.86425 0.77545 0.84163 0.78521 1.20113 1.21228 1.20112 1.21249 0.94071 0.96541 0.95199 1.20722 0.93936 1.01029 1.02075 0.88815 0.88393 0.88942 0.74942 0.84266 0.84259 0.90701 0.91050 0.90329 0.94993 0.88533 0.95604 0.92618 0.84235 0.84832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.42 10.32 36.01 0.37 -0.04 16 2 C 0.51 3.52 7.66 -10.98 -0.08 3.44 16 3 O -0.52 -6.04 14.76 5.57 0.08 -5.96 16 4 N -0.68 -3.87 5.31 -9.85 -0.05 -3.92 16 5 C 0.17 1.54 6.27 -83.73 -0.53 1.02 16 6 C -0.14 -1.46 8.60 -39.64 -0.34 -1.80 16 7 C -0.04 -0.44 9.56 -39.32 -0.38 -0.82 16 8 C -0.18 -2.22 5.87 -105.05 -0.62 -2.83 16 9 C 0.40 6.26 6.37 -30.83 -0.20 6.06 16 10 O -0.42 -7.96 16.60 -13.22 -0.22 -8.18 16 11 C 0.04 0.63 2.16 -27.89 -0.06 0.57 16 12 H 0.11 1.66 6.05 -51.93 -0.31 1.35 16 13 C -0.16 -2.21 9.41 37.16 0.35 -1.86 16 14 O -0.34 -7.23 9.40 -45.65 -0.43 -7.66 16 15 C 0.47 11.06 7.22 36.01 0.26 11.32 16 16 O -0.52 -12.76 14.68 -18.75 -0.28 -13.04 16 17 C 0.06 1.52 2.74 -92.92 -0.25 1.26 16 18 H 0.07 1.76 8.14 -51.93 -0.42 1.33 16 19 C -0.13 -3.25 8.90 37.16 0.33 -2.92 16 20 C -0.51 -14.44 8.37 -34.44 -0.29 -14.73 16 21 H 0.08 2.18 6.76 -52.49 -0.35 1.82 16 22 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 23 N -0.89 -25.04 11.32 55.43 0.63 -24.42 16 24 Si 0.91 21.50 29.54 -169.99 -5.02 16.48 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 28 C -0.05 -0.52 8.82 -39.32 -0.35 -0.86 16 29 C -0.16 -1.27 9.92 -39.64 -0.39 -1.67 16 30 H 0.09 0.06 8.14 -51.93 -0.42 -0.36 16 31 H 0.10 0.29 8.12 -51.92 -0.42 -0.13 16 32 H 0.09 0.04 8.14 -51.93 -0.42 -0.38 16 33 H 0.41 0.84 8.81 -40.82 -0.36 0.48 16 34 H 0.14 1.53 6.41 -52.49 -0.34 1.20 16 35 H 0.14 1.66 7.64 -52.48 -0.40 1.26 16 36 H 0.07 0.77 7.24 -51.93 -0.38 0.40 16 37 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.10 2.52 6.07 -51.93 -0.32 2.20 16 41 H 0.02 0.56 8.11 -51.93 -0.42 0.14 16 42 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 43 H 0.14 1.21 6.13 -52.49 -0.32 0.89 16 44 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 LS Contribution 377.02 15.07 5.68 5.68 Total: -1.00 -35.37 377.02 -7.59 -42.96 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -5.72 Total: 0.33 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -2.27 Total: -2.27 kcal Atomic # 7 Polarization: -28.91 SS G_CDS: 0.57 Total: -28.34 kcal Atomic # 8 Polarization: -34.00 SS G_CDS: -0.84 Total: -34.84 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.37 -7.59 -42.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647271381.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.467 kcal (2) G-P(sol) polarization free energy of solvation -35.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds