Wall clock time and date at job start Tue Mar 31 2020 18:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21269 * 120.00024 * 2 1 4 4 N 1.34779 * 119.99615 * 180.02562 * 2 1 3 5 5 C 1.39315 * 119.99687 * 185.27543 * 4 2 1 6 6 C 1.39216 * 119.89803 * 33.60212 * 5 4 2 7 7 C 1.37083 * 120.09759 * 180.02562 * 6 5 4 8 8 C 1.40049 * 119.90314 * 359.97438 * 7 6 5 9 9 C 1.46850 * 120.10508 * 180.02562 * 8 7 6 10 10 O 1.21299 * 119.99680 * 359.97438 * 9 8 7 11 11 C 1.50698 * 119.99928 * 179.97438 * 9 8 7 12 12 H 1.08996 * 109.47642 * 319.99775 * 11 9 8 13 13 C 1.52996 * 109.47109 * 80.00662 * 11 9 8 14 14 O 1.45204 * 109.46781 * 200.00010 * 11 9 8 15 15 C 1.34227 * 116.99987 * 150.00411 * 14 11 9 16 16 O 1.20830 * 120.00245 * 359.97438 * 15 14 11 17 17 C 1.50707 * 120.00162 * 180.02562 * 15 14 11 18 18 H 1.08994 * 109.47006 * 59.99538 * 17 15 14 19 19 C 1.53005 * 109.46681 * 299.99536 * 17 15 14 20 20 C 1.50699 * 109.47066 * 180.02562 * 17 15 14 21 21 H 1.07999 * 119.99911 * 359.97438 * 20 17 15 22 22 C 1.37874 * 119.99867 * 179.97438 * 20 17 15 23 23 N 1.31518 * 120.00014 * 359.97438 * 22 20 17 24 24 Si 1.86800 * 120.00063 * 179.97438 * 22 20 17 25 25 H 1.48503 * 109.47086 * 60.00023 * 24 22 20 26 26 H 1.48497 * 109.47259 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47059 * 299.99989 * 24 22 20 28 28 C 1.40064 * 119.79785 * 0.27434 * 8 7 6 29 29 C 1.37085 * 119.89582 * 359.44697 * 28 8 7 30 30 H 1.09000 * 109.47498 * 240.00227 * 1 2 3 31 31 H 1.09008 * 109.47059 * 0.02562 * 1 2 3 32 32 H 1.09003 * 109.47411 * 119.99579 * 1 2 3 33 33 H 0.97003 * 119.99899 * 5.28248 * 4 2 1 34 34 H 1.07998 * 119.95161 * 359.97438 * 6 5 4 35 35 H 1.08011 * 120.04769 * 179.97438 * 7 6 5 36 36 H 1.09003 * 109.47061 * 299.99489 * 13 11 9 37 37 H 1.08996 * 109.47592 * 59.99083 * 13 11 9 38 38 H 1.09001 * 109.47416 * 180.02562 * 13 11 9 39 39 H 1.09004 * 109.47078 * 300.00197 * 19 17 15 40 40 H 1.08995 * 109.47005 * 179.97438 * 19 17 15 41 41 H 1.09001 * 109.47305 * 60.00048 * 19 17 15 42 42 H 0.97002 * 119.99883 * 180.02562 * 23 22 20 43 43 H 1.07996 * 120.04662 * 179.70464 * 28 8 7 44 44 H 1.07990 * 119.94942 * 180.29377 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 3.5695 -1.1699 0.1104 6 6 4.2063 -0.1981 0.8774 7 6 5.5725 -0.1965 0.9889 8 6 6.3280 -1.1747 0.3304 9 6 7.7918 -1.1776 0.4473 10 8 8.3485 -0.3314 1.1147 11 6 8.6023 -2.2317 -0.2619 12 1 8.0930 -3.1925 -0.1882 13 6 8.7590 -1.8492 -1.7350 14 8 9.9133 -2.3303 0.3545 15 6 10.5151 -3.5295 0.3181 16 8 9.9646 -4.4660 -0.2109 17 6 11.8771 -3.7082 0.9381 18 1 11.8265 -3.4711 2.0007 19 6 12.8757 -2.7726 0.2537 20 6 12.3256 -5.1362 0.7622 21 1 11.6880 -5.8436 0.2528 22 6 13.5498 -5.5394 1.2515 23 7 14.3264 -4.6778 1.8714 24 14 14.1055 -7.3096 1.0342 25 1 14.1738 -7.6327 -0.4137 26 1 15.4481 -7.4854 1.6439 27 1 13.1367 -8.2177 1.6989 28 6 5.6834 -2.1474 -0.4444 29 6 4.3163 -2.1446 -0.5456 30 1 -0.3634 -0.5138 0.8900 31 1 -0.3633 1.0277 -0.0005 32 1 -0.3634 -0.5138 -0.8900 33 1 1.6988 -2.0055 -0.0782 34 1 3.6230 0.5562 1.3846 35 1 6.0657 0.5581 1.5839 36 1 7.7749 -1.7751 -2.1978 37 1 9.2683 -0.8884 -1.8088 38 1 9.3448 -2.6118 -2.2481 39 1 12.9262 -3.0098 -0.8091 40 1 13.8606 -2.9015 0.7023 41 1 12.5515 -1.7397 0.3804 42 1 15.1879 -4.9615 2.2153 43 1 6.2623 -2.9007 -0.9579 44 1 3.8181 -2.8970 -1.1389 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647271381.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:53 Heat of formation + Delta-G solvation = -155.842912 kcal Electronic energy + Delta-G solvation = -27620.391078 eV Core-core repulsion = 23502.198215 eV Total energy + Delta-G solvation = -4118.192862 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.98335 -41.54368 -40.57175 -39.08540 -37.49807 -35.99546 -35.92688 -33.72686 -32.56535 -32.09542 -31.65589 -29.75337 -27.30373 -26.48802 -25.32845 -24.42544 -23.54137 -21.80189 -21.62178 -20.83932 -19.10458 -18.75744 -18.35393 -18.09646 -17.71414 -17.43701 -16.99935 -16.74300 -16.48270 -15.97436 -15.82892 -15.48257 -15.17714 -14.94024 -14.81572 -14.55918 -14.30846 -14.11230 -13.98586 -13.79134 -13.55971 -13.32480 -13.29262 -13.02848 -13.01979 -12.82841 -12.69975 -12.60902 -12.34703 -12.29997 -12.04232 -11.85829 -11.56532 -11.18037 -11.12153 -11.09012 -10.71793 -10.52849 -10.15550 -9.31444 -8.19064 -6.33464 -0.59539 0.30848 1.02310 1.37600 1.43288 1.46358 1.52546 1.57385 1.69614 2.00768 2.43146 2.68749 2.82923 3.10772 3.58633 3.71458 3.82154 3.87338 3.88570 3.94110 4.12762 4.19087 4.31971 4.41277 4.54409 4.59653 4.63564 4.66720 4.67027 4.88157 4.89915 4.96440 5.01301 5.02207 5.07646 5.16050 5.23332 5.30449 5.36542 5.42731 5.67355 5.80235 5.86341 6.07678 6.29479 6.34578 6.72991 6.98259 7.05013 7.35310 8.87444 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.028418 B = 0.002090 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.047718 B =13392.528986 C =13839.738285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.504 3.496 3 O -0.573 6.573 4 N -0.660 5.660 5 C 0.183 3.817 6 C -0.149 4.149 7 C -0.046 4.046 8 C -0.198 4.198 9 C 0.406 3.594 10 O -0.471 6.471 11 C 0.028 3.972 12 H 0.117 0.883 13 C -0.156 4.156 14 O -0.353 6.353 15 C 0.475 3.525 16 O -0.530 6.530 17 C 0.048 3.952 18 H 0.044 0.956 19 C -0.120 4.120 20 C -0.536 4.536 21 H 0.063 0.937 22 C 0.019 3.981 23 N -0.911 5.911 24 Si 0.969 3.031 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.272 1.272 28 C -0.046 4.046 29 C -0.145 4.145 30 H 0.118 0.882 31 H 0.090 0.910 32 H 0.120 0.880 33 H 0.436 0.564 34 H 0.131 0.869 35 H 0.126 0.874 36 H 0.114 0.886 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.034 0.966 40 H 0.078 0.922 41 H 0.041 0.959 42 H 0.268 0.732 43 H 0.156 0.844 44 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.270 5.327 -6.753 31.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.295 3.705 3 O -0.451 6.451 4 N -0.307 5.307 5 C 0.086 3.914 6 C -0.169 4.169 7 C -0.065 4.065 8 C -0.200 4.200 9 C 0.284 3.716 10 O -0.347 6.347 11 C -0.028 4.028 12 H 0.135 0.865 13 C -0.213 4.213 14 O -0.270 6.270 15 C 0.320 3.680 16 O -0.418 6.418 17 C 0.029 3.971 18 H 0.062 0.938 19 C -0.178 4.178 20 C -0.574 4.574 21 H 0.081 0.919 22 C -0.181 4.181 23 N -0.550 5.550 24 Si 0.793 3.207 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.197 1.197 28 C -0.065 4.065 29 C -0.165 4.165 30 H 0.136 0.864 31 H 0.109 0.891 32 H 0.138 0.862 33 H 0.276 0.724 34 H 0.149 0.851 35 H 0.144 0.856 36 H 0.133 0.867 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.053 0.947 40 H 0.097 0.903 41 H 0.060 0.940 42 H 0.077 0.923 43 H 0.174 0.826 44 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -29.681 6.292 -6.469 31.022 hybrid contribution 0.551 -0.960 0.202 1.126 sum -29.130 5.331 -6.267 30.269 Atomic orbital electron populations 1.21979 0.86447 1.06657 1.07169 1.22008 0.92834 0.82272 0.73344 1.90773 1.71935 1.33127 1.49259 1.43578 1.04033 1.11332 1.71769 1.18173 0.84499 0.95399 0.93289 1.20939 0.94042 1.01059 1.00838 1.21116 0.93653 0.96077 0.95681 1.20123 0.92185 1.01323 1.06351 1.22497 0.89320 0.82818 0.76945 1.90538 1.74575 1.36126 1.33446 1.23271 0.82878 1.01039 0.95603 0.86505 1.22111 1.05452 1.03004 0.90755 1.86735 1.32243 1.35504 1.72548 1.24853 0.88527 0.79076 0.75536 1.90442 1.65933 1.41960 1.43504 1.18700 0.84433 0.97883 0.96046 0.93797 1.21556 1.01706 0.95844 0.98709 1.21212 1.03529 0.94045 1.38616 0.91916 1.25728 0.96053 1.02168 0.94175 1.69981 1.11272 1.35920 1.37795 0.85449 0.77393 0.79204 0.78647 1.19584 1.20168 1.19739 1.21471 0.95142 0.95689 0.94174 1.21086 0.93074 1.01081 1.01262 0.86400 0.89082 0.86162 0.72350 0.85085 0.85605 0.86733 0.91457 0.91133 0.94732 0.90338 0.94043 0.92289 0.82608 0.80721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.25 10.32 71.24 0.74 0.48 16 2 C 0.50 5.89 7.66 87.66 0.67 6.56 16 3 O -0.57 -13.11 14.76 -2.99 -0.04 -13.16 16 4 N -0.66 -5.46 5.31 -303.46 -1.61 -7.07 16 5 C 0.18 2.80 6.27 38.42 0.24 3.04 16 6 C -0.15 -3.19 8.60 22.23 0.19 -2.99 16 7 C -0.05 -1.15 9.56 22.44 0.21 -0.94 16 8 C -0.20 -4.90 5.87 -20.14 -0.12 -5.02 16 9 C 0.41 12.96 6.37 27.94 0.18 13.14 16 10 O -0.47 -18.58 16.60 14.85 0.25 -18.34 16 11 C 0.03 0.90 2.16 29.85 0.06 0.97 16 12 H 0.12 3.55 6.05 -2.39 -0.01 3.54 16 13 C -0.16 -4.08 9.41 71.98 0.68 -3.40 16 14 O -0.35 -15.20 9.40 -45.27 -0.43 -15.62 16 15 C 0.47 22.93 7.22 71.24 0.51 23.45 16 16 O -0.53 -26.26 14.68 21.95 0.32 -25.94 16 17 C 0.05 2.58 2.74 -12.28 -0.03 2.55 16 18 H 0.04 2.50 8.14 -2.39 -0.02 2.48 16 19 C -0.12 -5.97 8.90 71.98 0.64 -5.33 16 20 C -0.54 -30.67 8.37 25.60 0.21 -30.45 16 21 H 0.06 3.68 6.76 -2.91 -0.02 3.66 16 22 C 0.02 1.03 5.30 84.65 0.45 1.48 16 23 N -0.91 -51.73 11.32 21.45 0.24 -51.48 16 24 Si 0.97 43.91 29.54 68.60 2.03 45.94 16 25 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 26 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 27 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 28 C -0.05 -0.80 8.82 22.44 0.20 -0.60 16 29 C -0.15 -1.81 9.92 22.23 0.22 -1.59 16 30 H 0.12 -0.33 8.14 -2.39 -0.02 -0.35 16 31 H 0.09 0.34 8.12 -2.38 -0.02 0.32 16 32 H 0.12 -0.43 8.14 -2.39 -0.02 -0.45 16 33 H 0.44 -0.21 8.81 -92.71 -0.82 -1.02 16 34 H 0.13 3.01 6.41 -2.91 -0.02 2.99 16 35 H 0.13 3.33 7.64 -2.91 -0.02 3.31 16 36 H 0.11 2.05 7.24 -2.39 -0.02 2.03 16 37 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.08 4.18 6.07 -2.39 -0.01 4.16 16 41 H 0.04 1.86 8.11 -2.39 -0.02 1.84 16 42 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 43 H 0.16 2.17 6.13 -2.91 -0.02 2.16 16 44 H 0.18 0.77 8.06 -2.92 -0.02 0.75 16 Total: -1.00 -80.02 377.02 6.04 -73.98 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: 0.23 Total: 10.34 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: 5.06 Total: 1.35 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: -1.37 Total: -58.55 kcal Atomic # 8 Polarization: -73.15 SS G_CDS: 0.10 Total: -73.05 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -80.02 6.04 -73.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647271381.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.863 kcal (2) G-P(sol) polarization free energy of solvation -80.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds