Wall clock time and date at job start Tue Mar 31 2020 18:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21273 * 120.00515 * 2 1 4 4 N 1.34781 * 119.99967 * 179.97438 * 2 1 3 5 5 C 1.39311 * 120.00233 * 185.28232 * 4 2 1 6 6 C 1.39217 * 119.90133 * 33.58788 * 5 4 2 7 7 C 1.37084 * 120.10596 * 180.02562 * 6 5 4 8 8 C 1.40057 * 119.89463 * 0.23079 * 7 6 5 9 9 C 1.46847 * 120.10043 * 179.72746 * 8 7 6 10 10 O 1.21302 * 119.99879 * 359.97438 * 9 8 7 11 11 C 1.50695 * 120.00044 * 179.97438 * 9 8 7 12 12 H 1.08998 * 109.47339 * 319.99827 * 11 9 8 13 13 C 1.53004 * 109.47064 * 79.99881 * 11 9 8 14 14 O 1.45201 * 109.47322 * 199.99938 * 11 9 8 15 15 C 1.34225 * 117.00500 * 150.00064 * 14 11 9 16 16 O 1.20829 * 119.99589 * 0.02562 * 15 14 11 17 17 C 1.50705 * 120.00377 * 179.97438 * 15 14 11 18 18 H 1.08997 * 109.46729 * 300.00136 * 17 15 14 19 19 C 1.52996 * 109.46912 * 60.00298 * 17 15 14 20 20 C 1.50700 * 109.47114 * 179.97438 * 17 15 14 21 21 H 1.08008 * 119.99808 * 359.97438 * 20 17 15 22 22 C 1.37872 * 120.00098 * 179.97438 * 20 17 15 23 23 N 1.31521 * 119.99739 * 0.02562 * 22 20 17 24 24 Si 1.86798 * 120.00361 * 180.02562 * 22 20 17 25 25 H 1.48503 * 109.47083 * 89.99996 * 24 22 20 26 26 H 1.48498 * 109.47403 * 210.00192 * 24 22 20 27 27 H 1.48501 * 109.46859 * 330.00102 * 24 22 20 28 28 C 1.40056 * 119.80057 * 359.47160 * 8 7 6 29 29 C 1.37084 * 119.89569 * 0.57651 * 28 8 7 30 30 H 1.09001 * 109.47111 * 270.00264 * 1 2 3 31 31 H 1.09002 * 109.47160 * 29.99898 * 1 2 3 32 32 H 1.08995 * 109.47401 * 149.99897 * 1 2 3 33 33 H 0.96999 * 119.99854 * 5.27540 * 4 2 1 34 34 H 1.08007 * 119.94759 * 0.02562 * 6 5 4 35 35 H 1.07998 * 120.05233 * 179.97438 * 7 6 5 36 36 H 1.09007 * 109.46900 * 60.00373 * 13 11 9 37 37 H 1.09004 * 109.46949 * 179.97438 * 13 11 9 38 38 H 1.08995 * 109.47448 * 299.99920 * 13 11 9 39 39 H 1.09007 * 109.47160 * 299.99724 * 19 17 15 40 40 H 1.08994 * 109.47369 * 59.99607 * 19 17 15 41 41 H 1.08997 * 109.46838 * 180.02562 * 19 17 15 42 42 H 0.96994 * 119.99929 * 180.02562 * 23 22 20 43 43 H 1.07998 * 120.05685 * 180.26776 * 28 8 7 44 44 H 1.08007 * 119.95167 * 179.70245 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.5695 -1.1698 0.1116 6 6 4.2063 -0.1972 0.8776 7 6 5.5726 -0.1955 0.9893 8 6 6.3283 -1.1714 0.3274 9 6 7.7925 -1.1702 0.4392 10 8 8.3493 -0.3229 1.1051 11 6 8.6034 -2.2216 -0.2735 12 1 8.0970 -3.1839 -0.1984 13 6 8.7537 -1.8379 -1.7470 14 8 9.9169 -2.3170 0.3382 15 6 10.5219 -3.5145 0.2991 16 8 9.9724 -4.4519 -0.2293 17 6 11.8870 -3.6895 0.9130 18 1 12.5944 -3.0209 0.4225 19 6 11.8216 -3.3572 2.4050 20 6 12.3382 -5.1165 0.7361 21 1 11.7000 -5.8258 0.2300 22 6 13.5656 -5.5165 1.2202 23 7 14.3425 -4.6528 1.8369 24 14 14.1253 -7.2850 1.0003 25 1 14.8662 -7.4142 -0.2801 26 1 15.0139 -7.6668 2.1272 27 1 12.9405 -8.1800 0.9791 28 6 5.6830 -2.1516 -0.4370 29 6 4.3164 -2.1449 -0.5438 30 1 -0.3633 0.0000 1.0277 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3634 -0.8899 -0.5138 33 1 1.6989 -2.0055 -0.0763 34 1 3.6229 0.5572 1.3846 35 1 6.0657 0.5596 1.5834 36 1 9.2603 -0.8756 -1.8220 37 1 9.3407 -2.5982 -2.2623 38 1 7.7678 -1.7664 -2.2062 39 1 11.4950 -2.3251 2.5334 40 1 11.1141 -4.0257 2.8955 41 1 12.8090 -3.4834 2.8490 42 1 15.2061 -4.9340 2.1772 43 1 6.2615 -2.9087 -0.9456 44 1 3.8182 -2.8975 -1.1370 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647271384.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:03 Heat of formation + Delta-G solvation = -134.262010 kcal Electronic energy + Delta-G solvation = -27649.723745 eV Core-core repulsion = 23532.466701 eV Total energy + Delta-G solvation = -4117.257044 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.10401 -40.24210 -39.25061 -38.10230 -35.78355 -35.27237 -33.88281 -32.49242 -31.35268 -31.11058 -30.37626 -29.11494 -25.36027 -25.17909 -23.96656 -23.38193 -22.29977 -21.12590 -20.09147 -19.53301 -18.39322 -17.49599 -17.04764 -16.77766 -16.18966 -15.93555 -15.87899 -15.42519 -15.12594 -14.81863 -14.59659 -14.30896 -14.24042 -13.85911 -13.75171 -13.42987 -13.19190 -13.01568 -12.90652 -12.75551 -12.59173 -12.40735 -12.04944 -11.80329 -11.58091 -11.24113 -11.02644 -10.84024 -10.79104 -10.68494 -10.45376 -10.36246 -10.24406 -10.04637 -9.57384 -9.35935 -9.10860 -9.02274 -8.55827 -8.43732 -6.08851 -4.14718 0.33098 1.09483 1.88092 2.34606 2.51683 3.13916 3.27145 3.30964 3.36634 3.43537 3.53202 4.10959 4.11812 4.42766 4.45023 4.55637 4.59520 4.77438 4.92284 4.98373 5.05314 5.05850 5.12736 5.21806 5.24200 5.26417 5.48070 5.66461 5.74554 5.81194 5.85711 6.02171 6.04224 6.15844 6.20623 6.55928 6.70752 6.78871 6.91191 6.92811 7.17591 7.45744 7.49869 7.52205 7.76469 7.96114 8.15310 8.81020 8.93817 9.50533 10.98491 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.028488 B = 0.002101 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.623626 B =13322.608727 C =13696.606158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.509 3.491 3 O -0.520 6.520 4 N -0.674 5.674 5 C 0.174 3.826 6 C -0.135 4.135 7 C -0.037 4.037 8 C -0.176 4.176 9 C 0.399 3.601 10 O -0.425 6.425 11 C 0.038 3.962 12 H 0.106 0.894 13 C -0.162 4.162 14 O -0.342 6.342 15 C 0.466 3.534 16 O -0.517 6.517 17 C 0.058 3.942 18 H 0.066 0.934 19 C -0.134 4.134 20 C -0.512 4.512 21 H 0.076 0.924 22 C 0.061 3.939 23 N -0.891 5.891 24 Si 0.905 3.095 25 H -0.279 1.279 26 H -0.286 1.286 27 H -0.272 1.272 28 C -0.052 4.052 29 C -0.157 4.157 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.414 0.586 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.026 0.974 40 H 0.030 0.970 41 H 0.096 0.904 42 H 0.263 0.737 43 H 0.140 0.860 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.711 6.937 -4.640 28.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.298 3.702 3 O -0.394 6.394 4 N -0.320 5.320 5 C 0.079 3.921 6 C -0.155 4.155 7 C -0.056 4.056 8 C -0.178 4.178 9 C 0.274 3.726 10 O -0.297 6.297 11 C -0.018 4.018 12 H 0.124 0.876 13 C -0.219 4.219 14 O -0.260 6.260 15 C 0.311 3.689 16 O -0.404 6.404 17 C 0.040 3.960 18 H 0.083 0.917 19 C -0.192 4.192 20 C -0.550 4.550 21 H 0.094 0.906 22 C -0.141 4.141 23 N -0.529 5.529 24 Si 0.733 3.267 25 H -0.205 1.205 26 H -0.211 1.211 27 H -0.197 1.197 28 C -0.071 4.071 29 C -0.177 4.177 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.102 0.898 33 H 0.251 0.749 34 H 0.157 0.843 35 H 0.157 0.843 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.045 0.955 40 H 0.050 0.950 41 H 0.115 0.885 42 H 0.073 0.927 43 H 0.158 0.842 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -27.076 7.920 -4.347 28.543 hybrid contribution -0.106 -1.554 -0.300 1.586 sum -27.182 6.366 -4.647 28.302 Atomic orbital electron populations 1.21901 0.90362 1.05458 1.05351 1.21098 0.91057 0.83057 0.75024 1.90783 1.70514 1.31161 1.46952 1.43621 1.05314 1.10280 1.72782 1.18003 0.82845 0.96436 0.94851 1.20960 0.94635 1.00142 0.99785 1.21176 0.92977 0.96140 0.95281 1.20367 0.94318 0.99274 1.03854 1.22226 0.87951 0.84071 0.78344 1.90553 1.73616 1.34235 1.31295 1.22762 0.85085 0.99991 0.94001 0.87625 1.22095 1.03281 1.03684 0.92836 1.86812 1.29590 1.37234 1.72367 1.25524 0.89351 0.78572 0.75501 1.90473 1.65833 1.41256 1.42821 1.18784 0.83487 0.99738 0.94041 0.91677 1.21739 1.03949 0.97060 0.96477 1.21119 1.02621 0.93582 1.37715 0.90615 1.24948 0.96211 0.98112 0.94785 1.69888 1.10712 1.34301 1.38017 0.86371 0.78543 0.84146 0.77672 1.20547 1.21146 1.19714 1.21246 0.94073 0.96513 0.95243 1.20727 0.93941 1.01034 1.02046 0.88222 0.88330 0.89783 0.74944 0.84268 0.84260 0.91057 0.90322 0.90674 0.95542 0.95045 0.88518 0.92678 0.84237 0.84833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.41 10.31 36.00 0.37 -0.04 16 2 C 0.51 3.53 7.66 -10.99 -0.08 3.44 16 3 O -0.52 -6.05 14.78 5.56 0.08 -5.97 16 4 N -0.67 -3.89 5.31 -9.85 -0.05 -3.94 16 5 C 0.17 1.54 6.27 -83.73 -0.53 1.02 16 6 C -0.14 -1.46 8.60 -39.64 -0.34 -1.80 16 7 C -0.04 -0.44 9.57 -39.32 -0.38 -0.82 16 8 C -0.18 -2.22 5.87 -105.05 -0.62 -2.83 16 9 C 0.40 6.26 6.37 -30.83 -0.20 6.07 16 10 O -0.42 -7.96 16.60 -13.22 -0.22 -8.18 16 11 C 0.04 0.63 2.16 -27.88 -0.06 0.57 16 12 H 0.11 1.66 6.02 -51.93 -0.31 1.35 16 13 C -0.16 -2.20 9.42 37.16 0.35 -1.85 16 14 O -0.34 -7.23 9.40 -45.64 -0.43 -7.66 16 15 C 0.47 11.06 7.22 36.01 0.26 11.32 16 16 O -0.52 -12.77 14.68 -18.75 -0.28 -13.04 16 17 C 0.06 1.52 2.74 -92.92 -0.25 1.26 16 18 H 0.07 1.75 8.14 -51.93 -0.42 1.33 16 19 C -0.13 -3.32 8.90 37.16 0.33 -2.98 16 20 C -0.51 -14.42 8.37 -34.44 -0.29 -14.71 16 21 H 0.08 2.20 6.76 -52.48 -0.35 1.84 16 22 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 23 N -0.89 -25.05 11.32 55.43 0.63 -24.42 16 24 Si 0.91 21.50 29.54 -169.99 -5.02 16.48 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 26 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 28 C -0.05 -0.52 8.83 -39.32 -0.35 -0.87 16 29 C -0.16 -1.28 9.92 -39.64 -0.39 -1.67 16 30 H 0.10 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.10 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.08 0.00 8.14 -51.93 -0.42 -0.43 16 33 H 0.41 0.85 8.81 -40.82 -0.36 0.49 16 34 H 0.14 1.54 6.41 -52.48 -0.34 1.20 16 35 H 0.14 1.66 7.64 -52.49 -0.40 1.26 16 36 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 37 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.07 0.77 7.29 -51.93 -0.38 0.39 16 39 H 0.03 0.59 8.11 -51.93 -0.42 0.17 16 40 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.10 2.54 6.07 -51.93 -0.32 2.23 16 42 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 43 H 0.14 1.22 6.16 -52.49 -0.32 0.90 16 44 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 LS Contribution 377.11 15.07 5.68 5.68 Total: -1.00 -35.42 377.11 -7.59 -43.01 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -5.72 Total: 0.35 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -2.27 Total: -2.31 kcal Atomic # 7 Polarization: -28.93 SS G_CDS: 0.58 Total: -28.36 kcal Atomic # 8 Polarization: -34.01 SS G_CDS: -0.84 Total: -34.85 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.42 -7.59 -43.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647271384.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.252 kcal (2) G-P(sol) polarization free energy of solvation -35.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds