Wall clock time and date at job start Tue Mar 31 2020 18:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47747 * 2 1 4 4 N 1.46501 * 109.46973 * 120.00101 * 2 1 3 5 5 C 1.34774 * 119.99739 * 274.99598 * 4 2 1 6 6 O 1.21555 * 119.99999 * 359.97438 * 5 4 2 7 7 C 1.47852 * 120.00148 * 180.02562 * 5 4 2 8 8 C 1.39576 * 120.14001 * 359.71944 * 7 5 4 9 9 C 1.37960 * 119.85128 * 179.78904 * 8 7 5 10 10 C 1.38357 * 120.14237 * 0.49555 * 9 8 7 11 11 C 1.38364 * 120.29556 * 359.73615 * 10 9 8 12 12 C 1.37953 * 120.14147 * 0.02562 * 11 10 9 13 13 C 1.50703 * 109.47007 * 239.99508 * 2 1 3 14 14 O 1.20821 * 120.00259 * 240.00498 * 13 2 1 15 15 O 1.34231 * 119.99789 * 60.00166 * 13 2 1 16 16 C 1.45203 * 116.99764 * 179.97438 * 15 13 2 17 17 C 1.53004 * 109.46800 * 179.97438 * 16 15 13 18 18 C 1.50706 * 112.99641 * 53.52875 * 17 16 15 19 19 H 1.08002 * 119.99579 * 245.39227 * 18 17 16 20 20 C 1.37872 * 119.99997 * 65.39266 * 18 17 16 21 21 N 1.31511 * 120.00390 * 6.60371 * 20 18 17 22 22 Si 1.86802 * 119.99721 * 186.61285 * 20 18 17 23 23 H 1.48500 * 109.47643 * 89.99486 * 22 20 18 24 24 H 1.48502 * 109.47257 * 209.99644 * 22 20 18 25 25 H 1.48500 * 109.47208 * 329.99769 * 22 20 18 26 26 C 1.54027 * 113.82007 * 281.53864 * 17 16 15 27 27 O 1.44182 * 85.51751 * 223.19833 * 26 17 16 28 28 C 1.44173 * 93.34120 * 24.19163 * 27 26 17 29 29 H 1.08999 * 109.47747 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46910 * 60.00046 * 1 2 3 31 31 H 1.08999 * 109.47180 * 300.00566 * 1 2 3 32 32 H 0.96999 * 120.00434 * 94.99588 * 4 2 1 33 33 H 1.08006 * 120.07566 * 0.02562 * 8 7 5 34 34 H 1.08004 * 119.92820 * 180.23086 * 9 8 7 35 35 H 1.07998 * 119.85415 * 179.72092 * 10 9 8 36 36 H 1.07992 * 119.92842 * 180.02562 * 11 10 9 37 37 H 1.07997 * 120.07577 * 179.97438 * 12 11 10 38 38 H 1.08994 * 109.47715 * 300.00287 * 16 15 13 39 39 H 1.08998 * 109.46795 * 60.00723 * 16 15 13 40 40 H 0.97006 * 119.99959 * 179.97438 * 21 20 18 41 41 H 1.09005 * 113.86620 * 337.34319 * 26 17 16 42 42 H 1.09001 * 113.86436 * 109.05115 * 26 17 16 43 43 H 1.09003 * 113.87000 * 221.66365 * 28 27 26 44 44 H 1.08998 * 113.98527 * 89.96939 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 2.1470 -0.0183 2.3571 6 8 1.8584 1.1613 2.4115 7 6 2.6403 -0.7150 3.5642 8 6 2.9680 -2.0705 3.5063 9 6 3.4319 -2.7137 4.6351 10 6 3.5629 -2.0206 5.8253 11 6 3.2352 -0.6779 5.8908 12 6 2.7748 -0.0217 4.7680 13 6 2.0322 -0.7105 -1.2304 14 8 2.7268 -1.6929 -1.1196 15 8 1.7080 -0.2520 -2.4496 16 6 2.2276 -0.9860 -3.5896 17 6 1.7554 -0.3195 -4.8834 18 6 2.0811 1.1508 -4.9412 19 1 1.2849 1.8804 -4.9482 20 6 3.3956 1.5644 -4.9851 21 7 4.3600 0.6787 -5.1077 22 14 3.8068 3.3830 -4.8704 23 1 3.9956 3.7590 -3.4462 24 1 5.0566 3.6565 -5.6244 25 1 2.6950 4.1793 -5.4493 26 6 0.2990 -0.6520 -5.2588 27 8 0.7999 -0.8079 -6.6018 28 6 2.1419 -1.0928 -6.1583 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3633 0.5139 0.8899 32 1 2.2489 -1.6318 1.1527 33 1 2.8623 -2.6138 2.5788 34 1 3.6894 -3.7617 4.5907 35 1 3.9222 -2.5298 6.7073 36 1 3.3401 -0.1425 6.8228 37 1 2.5190 1.0263 4.8204 38 1 3.3170 -0.9850 -3.5566 39 1 1.8640 -2.0130 -3.5568 40 1 5.2848 0.9698 -5.1389 41 1 -0.0705 -1.5768 -4.8158 42 1 -0.3892 0.1848 -5.1392 43 1 2.9154 -0.6057 -6.7521 44 1 2.3374 -2.1518 -5.9896 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649233107.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:16 Heat of formation + Delta-G solvation = -122.395128 kcal Electronic energy + Delta-G solvation = -28343.767554 eV Core-core repulsion = 24227.025097 eV Total energy + Delta-G solvation = -4116.742458 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.95847 -41.23904 -40.74423 -39.28852 -37.61368 -36.30046 -34.90322 -33.15740 -31.93341 -31.85967 -30.98025 -27.47689 -27.13215 -26.51353 -25.72731 -24.46478 -23.44000 -21.90859 -21.48552 -20.89827 -19.64269 -18.64125 -18.09765 -17.72173 -17.53012 -17.27686 -16.84567 -16.62769 -16.26069 -16.17651 -16.15271 -15.93615 -15.55242 -15.37964 -14.83171 -14.71323 -14.34635 -14.11939 -13.99632 -13.70589 -13.58551 -13.39331 -13.27695 -12.91368 -12.74670 -12.63161 -12.60340 -12.36685 -12.04314 -11.86127 -11.80195 -11.35085 -11.30532 -11.20221 -10.91866 -10.71116 -10.51550 -10.19661 -9.97403 -9.94704 -8.20602 -6.27521 -0.19225 0.39778 1.05952 1.34459 1.39344 1.42895 1.50199 1.75712 2.15699 2.39246 2.87051 3.00583 3.22852 3.40561 3.60315 3.87336 3.90741 3.98711 4.00666 4.07982 4.23597 4.25204 4.45151 4.46075 4.49721 4.50352 4.57643 4.61583 4.70123 4.75988 4.83504 5.04400 5.07599 5.11817 5.16291 5.23248 5.32445 5.42936 5.48577 5.49197 5.50901 5.58920 5.72343 5.93052 6.21890 6.27070 6.65922 6.72642 6.95790 7.38410 8.86077 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.016205 B = 0.002777 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.432171 B =10082.197319 C =10739.067885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.156 3.844 3 H 0.114 0.886 4 N -0.705 5.705 5 C 0.562 3.438 6 O -0.570 6.570 7 C -0.157 4.157 8 C -0.090 4.090 9 C -0.129 4.129 10 C -0.087 4.087 11 C -0.129 4.129 12 C -0.076 4.076 13 C 0.454 3.546 14 O -0.537 6.537 15 O -0.330 6.330 16 C 0.094 3.906 17 C 0.017 3.983 18 C -0.499 4.499 19 H 0.059 0.941 20 C 0.027 3.973 21 N -0.908 5.908 22 Si 0.946 3.054 23 H -0.281 1.281 24 H -0.285 1.285 25 H -0.267 1.267 26 C 0.038 3.962 27 O -0.403 6.403 28 C 0.054 3.946 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.415 0.585 33 H 0.135 0.865 34 H 0.156 0.844 35 H 0.160 0.840 36 H 0.154 0.846 37 H 0.127 0.873 38 H 0.053 0.947 39 H 0.059 0.941 40 H 0.263 0.737 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.832 -7.956 20.947 22.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.050 3.950 3 H 0.132 0.868 4 N -0.360 5.360 5 C 0.352 3.648 6 O -0.450 6.450 7 C -0.160 4.160 8 C -0.109 4.109 9 C -0.146 4.146 10 C -0.105 4.105 11 C -0.147 4.147 12 C -0.095 4.095 13 C 0.297 3.703 14 O -0.428 6.428 15 O -0.243 6.243 16 C 0.020 3.980 17 C 0.016 3.984 18 C -0.536 4.536 19 H 0.077 0.923 20 C -0.174 4.174 21 N -0.546 5.546 22 Si 0.772 3.228 23 H -0.207 1.207 24 H -0.210 1.210 25 H -0.191 1.191 26 C -0.038 4.038 27 O -0.323 6.323 28 C -0.023 4.023 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.098 0.902 32 H 0.254 0.746 33 H 0.153 0.847 34 H 0.173 0.827 35 H 0.177 0.823 36 H 0.172 0.828 37 H 0.145 0.855 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.103 0.897 42 H 0.103 0.897 43 H 0.092 0.908 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.765 -7.402 20.630 22.239 hybrid contribution 0.981 0.538 -0.379 1.181 sum -2.784 -6.864 20.252 21.564 Atomic orbital electron populations 1.22057 0.89542 1.04187 1.04733 1.20346 0.97883 0.96914 0.79883 0.86806 1.45699 1.67312 1.15074 1.07924 1.18707 0.76595 0.86068 0.83463 1.90758 1.51845 1.16847 1.85564 1.19828 1.07145 0.95523 0.93463 1.21571 0.96511 0.92607 1.00221 1.21506 0.99205 1.01732 0.92201 1.21839 0.95692 0.94143 0.98859 1.21484 0.99095 0.95525 0.98603 1.21403 0.95995 1.00423 0.91656 1.23953 0.77236 0.82647 0.86469 1.90579 1.36935 1.27471 1.87799 1.86531 1.68144 1.55396 1.14277 1.23230 0.98829 0.92653 0.83336 1.21184 0.91830 0.96233 0.89141 1.20801 0.92111 0.90360 1.50369 0.92279 1.25535 0.96348 1.01110 0.94375 1.69970 0.99984 1.34829 1.49848 0.85730 0.77753 0.81376 0.77923 1.20680 1.21023 1.19146 1.24209 0.97411 1.00334 0.81860 1.89475 1.24236 1.91831 1.26715 1.23827 0.84668 0.97660 0.96139 0.90481 0.89247 0.90248 0.74561 0.84689 0.82668 0.82282 0.82806 0.85532 0.92820 0.92299 0.92800 0.89671 0.89683 0.90806 0.91180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 9.42 71.98 0.68 -2.87 16 2 C 0.16 4.68 3.09 44.24 0.14 4.82 16 3 H 0.11 3.75 7.58 -2.39 -0.02 3.73 16 4 N -0.71 -18.92 4.90 -448.98 -2.20 -21.13 16 5 C 0.56 15.91 7.74 86.79 0.67 16.58 16 6 O -0.57 -19.70 16.01 -3.89 -0.06 -19.76 16 7 C -0.16 -3.55 5.87 -20.09 -0.12 -3.67 16 8 C -0.09 -1.59 9.54 22.53 0.21 -1.37 16 9 C -0.13 -1.63 10.03 22.23 0.22 -1.41 16 10 C -0.09 -0.96 10.04 22.33 0.22 -0.74 16 11 C -0.13 -1.77 10.03 22.23 0.22 -1.54 16 12 C -0.08 -1.53 9.60 22.52 0.22 -1.31 16 13 C 0.45 16.51 7.32 71.24 0.52 17.03 16 14 O -0.54 -21.00 15.59 21.98 0.34 -20.66 16 15 O -0.33 -13.58 9.73 -51.42 -0.50 -14.08 16 16 C 0.09 4.11 4.67 71.98 0.34 4.45 16 17 C 0.02 0.77 0.62 -52.23 -0.03 0.74 16 18 C -0.50 -25.95 7.92 25.60 0.20 -25.74 16 19 H 0.06 3.09 7.82 -2.91 -0.02 3.07 16 20 C 0.03 1.41 5.25 84.65 0.44 1.85 16 21 N -0.91 -49.33 11.31 21.44 0.24 -49.08 16 22 Si 0.95 43.04 29.54 68.60 2.03 45.07 16 23 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 24 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 26 C 0.04 1.53 8.35 72.27 0.60 2.13 16 27 O -0.40 -18.29 12.40 -148.98 -1.85 -20.14 16 28 C 0.05 2.47 7.91 72.28 0.57 3.04 16 29 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.09 2.15 8.11 -2.38 -0.02 2.13 16 31 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.42 9.91 5.83 -92.71 -0.54 9.37 16 33 H 0.14 2.07 6.41 -2.91 -0.02 2.05 16 34 H 0.16 1.14 8.06 -2.91 -0.02 1.11 16 35 H 0.16 0.72 8.06 -2.91 -0.02 0.69 16 36 H 0.15 1.27 8.06 -2.91 -0.02 1.24 16 37 H 0.13 2.71 7.65 -2.91 -0.02 2.69 16 38 H 0.05 2.71 7.21 -2.39 -0.02 2.69 16 39 H 0.06 2.32 8.04 -2.39 -0.02 2.30 16 40 H 0.26 13.85 8.31 -92.70 -0.77 13.08 16 41 H 0.09 2.86 8.03 -2.38 -0.02 2.84 16 42 H 0.08 3.27 8.09 -2.39 -0.02 3.25 16 43 H 0.07 3.74 7.36 -2.39 -0.02 3.72 16 44 H 0.07 2.84 8.10 -2.39 -0.02 2.82 16 Total: -1.00 -66.50 377.19 3.61 -62.89 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: 0.49 Total: 24.92 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: 5.12 Total: 11.98 kcal Atomic # 7 Polarization: -68.25 SS G_CDS: -1.96 Total: -70.21 kcal Atomic # 8 Polarization: -72.58 SS G_CDS: -2.07 Total: -74.64 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -66.50 3.61 -62.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649233107.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.504 kcal (2) G-P(sol) polarization free energy of solvation -66.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds