Wall clock time and date at job start Tue Mar 31 2020 18:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46768 * 2 1 4 4 N 1.46504 * 109.47114 * 239.99779 * 2 1 3 5 5 C 1.34781 * 119.99560 * 85.27662 * 4 2 1 6 6 O 1.21549 * 120.00116 * 359.72365 * 5 4 2 7 7 C 1.47844 * 119.99732 * 179.72560 * 5 4 2 8 8 C 1.39575 * 120.14466 * 359.72068 * 7 5 4 9 9 C 1.37956 * 119.85087 * 179.79329 * 8 7 5 10 10 C 1.38365 * 120.14612 * 0.48821 * 9 8 7 11 11 C 1.38360 * 120.28979 * 359.73971 * 10 9 8 12 12 C 1.37956 * 120.14685 * 0.02900 * 11 10 9 13 13 C 1.50698 * 109.46970 * 120.00075 * 2 1 3 14 14 O 1.20827 * 120.00237 * 93.83591 * 13 2 1 15 15 O 1.34231 * 120.00160 * 273.82888 * 13 2 1 16 16 C 1.45198 * 116.99986 * 183.07488 * 15 13 2 17 17 C 1.53011 * 109.46940 * 176.16923 * 16 15 13 18 18 C 1.50702 * 112.99167 * 53.37381 * 17 16 15 19 19 H 1.08002 * 119.99669 * 244.50519 * 18 17 16 20 20 C 1.37878 * 120.00080 * 64.51913 * 18 17 16 21 21 N 1.31514 * 120.00115 * 5.72280 * 20 18 17 22 22 Si 1.86802 * 119.99716 * 185.73385 * 20 18 17 23 23 H 1.48500 * 109.47378 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47156 * 119.99490 * 22 20 18 25 25 H 1.48499 * 109.47130 * 239.99506 * 22 20 18 26 26 C 1.54024 * 113.81630 * 281.38931 * 17 16 15 27 27 O 1.44177 * 85.51830 * 223.19268 * 26 17 16 28 28 C 1.44182 * 93.33634 * 24.19227 * 27 26 17 29 29 H 1.09002 * 109.46991 * 63.88747 * 1 2 3 30 30 H 1.09003 * 109.46754 * 183.88604 * 1 2 3 31 31 H 1.08991 * 109.47069 * 303.88206 * 1 2 3 32 32 H 0.96995 * 120.00165 * 265.00289 * 4 2 1 33 33 H 1.08000 * 120.07583 * 0.02562 * 8 7 5 34 34 H 1.07998 * 119.92969 * 180.23026 * 9 8 7 35 35 H 1.08003 * 119.85143 * 179.72671 * 10 9 8 36 36 H 1.08002 * 119.92529 * 180.02562 * 11 10 9 37 37 H 1.07993 * 120.07278 * 179.97438 * 12 11 10 38 38 H 1.08993 * 109.47581 * 296.16876 * 16 15 13 39 39 H 1.09001 * 109.47110 * 56.17749 * 16 15 13 40 40 H 0.97000 * 119.99579 * 185.01114 * 21 20 18 41 41 H 1.08999 * 113.87127 * 337.33975 * 26 17 16 42 42 H 1.09000 * 113.86965 * 109.05128 * 26 17 16 43 43 H 1.09002 * 113.86469 * 221.65881 * 28 27 26 44 44 H 1.09004 * 113.98095 * 89.97292 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1962 5 6 2.1524 -0.0169 -2.3558 6 8 1.8633 1.1624 -2.4104 7 6 2.6509 -0.7124 -3.5614 8 6 2.9893 -2.0652 -3.5007 9 6 3.4498 -2.7092 -4.6304 10 6 3.5862 -2.0146 -5.8193 11 6 3.2571 -0.6723 -5.8850 12 6 2.7909 -0.0176 -4.7638 13 6 2.0323 -0.7104 1.2304 14 8 2.2997 -1.8877 1.1815 15 8 2.1829 -0.0353 2.3808 16 6 2.7356 -0.7666 3.5068 17 6 2.9206 0.1843 4.6912 18 6 1.6634 0.9368 5.0439 19 1 1.6295 2.0111 4.9379 20 6 0.5567 0.2539 5.5020 21 7 0.6323 -1.0376 5.7384 22 14 -1.0501 1.1631 5.7865 23 1 -0.8734 2.5983 5.4485 24 1 -2.1091 0.5781 4.9254 25 1 -1.4451 1.0358 7.2123 26 6 4.1726 1.0750 4.5841 27 8 4.3714 0.7685 5.9788 28 6 3.6205 -0.4599 5.9026 29 1 -0.3633 0.4523 -0.9228 30 1 -0.3633 -1.0254 0.0697 31 1 -0.3633 0.5729 0.8531 32 1 2.2490 -1.6318 -1.1526 33 1 2.8872 -2.6074 -2.5723 34 1 3.7084 -3.7568 -4.5858 35 1 3.9514 -2.5225 -6.6997 36 1 3.3655 -0.1360 -6.8162 37 1 2.5347 1.0302 -4.8164 38 1 2.0544 -1.5694 3.7885 39 1 3.7002 -1.1900 3.2268 40 1 -0.1633 -1.5318 5.9906 41 1 4.9457 0.6724 3.9296 42 1 3.9519 2.1247 4.3904 43 1 2.9617 -0.6277 6.7547 44 1 4.2231 -1.3327 5.6512 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649233123.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:20 Heat of formation + Delta-G solvation = -104.781086 kcal Electronic energy + Delta-G solvation = -28327.696868 eV Core-core repulsion = 24211.718213 eV Total energy + Delta-G solvation = -4115.978656 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.69788 -39.90208 -39.17451 -38.41982 -36.10926 -35.01271 -32.97231 -32.21555 -31.26505 -30.35197 -29.79469 -25.82045 -25.41184 -25.01952 -24.37426 -23.33166 -22.73551 -20.77591 -20.24028 -19.10624 -18.59962 -17.15866 -16.75016 -16.34725 -16.13358 -15.91548 -15.60079 -15.13115 -15.00873 -14.83913 -14.76155 -14.39764 -14.34369 -14.07218 -13.92746 -13.63645 -13.25813 -12.86335 -12.68340 -12.36561 -12.04032 -12.02110 -11.98612 -11.74179 -11.51392 -11.41203 -11.04907 -10.79291 -10.53371 -10.27817 -10.17152 -10.01596 -9.69175 -9.47571 -9.42001 -9.33710 -9.20978 -9.12098 -8.81072 -8.33861 -6.22317 -4.25160 0.53984 1.02494 2.41339 2.64896 2.72514 3.22455 3.31660 3.36248 3.41640 3.59580 4.30961 4.39135 4.49176 4.59506 4.78469 4.83708 5.01204 5.02863 5.07783 5.12982 5.15092 5.16691 5.45494 5.63187 5.64379 5.76348 5.83877 5.96214 5.97444 6.05380 6.09275 6.12620 6.14345 6.20682 6.23990 6.32316 6.48168 6.52921 6.89267 7.02086 7.20535 7.23084 7.28971 7.30827 7.74767 7.97642 8.09605 8.25917 8.72933 9.39166 10.86173 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.017441 B = 0.002714 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.042757 B =10315.732002 C =10981.544871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.152 3.848 3 H 0.123 0.877 4 N -0.712 5.712 5 C 0.563 3.437 6 O -0.532 6.532 7 C -0.133 4.133 8 C -0.085 4.085 9 C -0.128 4.128 10 C -0.095 4.095 11 C -0.130 4.130 12 C -0.059 4.059 13 C 0.453 3.547 14 O -0.522 6.522 15 O -0.320 6.320 16 C 0.082 3.918 17 C 0.032 3.968 18 C -0.483 4.483 19 H 0.067 0.933 20 C 0.067 3.933 21 N -0.890 5.890 22 Si 0.897 3.103 23 H -0.270 1.270 24 H -0.283 1.283 25 H -0.284 1.284 26 C 0.027 3.973 27 O -0.387 6.387 28 C 0.050 3.950 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.409 0.591 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.130 0.870 37 H 0.137 0.863 38 H 0.088 0.912 39 H 0.038 0.962 40 H 0.264 0.736 41 H 0.053 0.947 42 H 0.079 0.921 43 H 0.099 0.901 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.467 -3.499 -20.210 20.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.046 3.954 3 H 0.141 0.859 4 N -0.367 5.367 5 C 0.350 3.650 6 O -0.410 6.410 7 C -0.136 4.136 8 C -0.103 4.103 9 C -0.145 4.145 10 C -0.114 4.114 11 C -0.148 4.148 12 C -0.078 4.078 13 C 0.295 3.705 14 O -0.413 6.413 15 O -0.233 6.233 16 C 0.009 3.991 17 C 0.031 3.969 18 C -0.521 4.521 19 H 0.086 0.914 20 C -0.136 4.136 21 N -0.527 5.527 22 Si 0.724 3.276 23 H -0.194 1.194 24 H -0.209 1.209 25 H -0.210 1.210 26 C -0.050 4.050 27 O -0.306 6.306 28 C -0.027 4.027 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.104 0.896 32 H 0.247 0.753 33 H 0.147 0.853 34 H 0.147 0.853 35 H 0.144 0.856 36 H 0.147 0.853 37 H 0.155 0.845 38 H 0.107 0.893 39 H 0.057 0.943 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.097 0.903 43 H 0.117 0.883 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.375 -2.992 -19.805 20.312 hybrid contribution -0.804 -0.561 0.109 0.987 sum 2.571 -3.553 -19.696 20.179 Atomic orbital electron populations 1.22085 0.91623 1.03487 1.04276 1.20355 0.96287 0.98016 0.80749 0.85881 1.45785 1.67405 1.14813 1.08707 1.18246 0.77493 0.86413 0.82805 1.90788 1.50058 1.15312 1.84827 1.19911 1.04803 0.94545 0.94293 1.21423 0.96430 0.93413 0.99069 1.21141 1.00292 1.00425 0.92690 1.21406 0.97478 0.94528 0.97965 1.21178 1.00120 0.94905 0.98584 1.21312 0.94943 1.00539 0.90998 1.23395 0.74921 0.86163 0.85993 1.90593 1.48158 1.16975 1.85529 1.86558 1.73621 1.44038 1.19078 1.23531 0.95979 0.96696 0.82904 1.21139 0.94389 0.91858 0.89465 1.20618 0.94839 0.93706 1.42918 0.91446 1.24945 0.99178 0.95160 0.94286 1.69894 1.29261 1.07228 1.46356 0.86445 0.83082 0.80228 0.77824 1.19445 1.20862 1.20976 1.24107 0.96492 1.01046 0.83312 1.89501 1.76758 1.38631 1.25719 1.23928 0.91360 0.86002 1.01394 0.90580 0.91711 0.89606 0.75342 0.85325 0.85260 0.85554 0.85254 0.84487 0.89345 0.94329 0.92600 0.92884 0.90252 0.88267 0.93469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 9.47 37.16 0.35 -1.80 16 2 C 0.15 2.27 3.08 -69.08 -0.21 2.06 16 3 H 0.12 1.86 7.57 -51.93 -0.39 1.47 16 4 N -0.71 -9.35 5.00 -55.87 -0.28 -9.63 16 5 C 0.56 7.55 7.74 -12.33 -0.10 7.46 16 6 O -0.53 -8.60 16.01 5.32 0.09 -8.52 16 7 C -0.13 -1.46 5.87 -104.97 -0.62 -2.07 16 8 C -0.08 -0.77 9.54 -39.19 -0.37 -1.14 16 9 C -0.13 -0.95 10.03 -39.64 -0.40 -1.35 16 10 C -0.10 -0.66 10.04 -39.49 -0.40 -1.05 16 11 C -0.13 -0.98 10.03 -39.64 -0.40 -1.38 16 12 C -0.06 -0.58 9.60 -39.18 -0.38 -0.96 16 13 C 0.45 8.29 7.16 36.00 0.26 8.55 16 14 O -0.52 -10.20 15.76 -18.75 -0.30 -10.50 16 15 O -0.32 -6.72 9.82 -39.26 -0.39 -7.11 16 16 C 0.08 1.84 4.67 37.16 0.17 2.01 16 17 C 0.03 0.75 0.62 -154.58 -0.10 0.66 16 18 C -0.48 -12.49 7.92 -34.44 -0.27 -12.76 16 19 H 0.07 1.76 7.82 -52.49 -0.41 1.35 16 20 C 0.07 1.72 5.25 -17.82 -0.09 1.63 16 21 N -0.89 -23.49 11.32 55.43 0.63 -22.86 16 22 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 C 0.03 0.58 8.35 37.60 0.31 0.90 16 27 O -0.39 -9.06 12.40 -35.23 -0.44 -9.50 16 28 C 0.05 1.16 7.93 37.60 0.30 1.46 16 29 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.41 4.89 5.83 -40.82 -0.24 4.66 16 33 H 0.13 1.03 6.41 -52.49 -0.34 0.69 16 34 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 35 H 0.13 0.55 8.06 -52.48 -0.42 0.13 16 36 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 37 H 0.14 1.34 7.65 -52.49 -0.40 0.94 16 38 H 0.09 2.19 7.12 -51.93 -0.37 1.82 16 39 H 0.04 0.80 8.00 -51.93 -0.42 0.38 16 40 H 0.26 6.72 8.32 -40.82 -0.34 6.38 16 41 H 0.05 1.01 8.03 -51.93 -0.42 0.59 16 42 H 0.08 1.63 8.09 -51.93 -0.42 1.21 16 43 H 0.10 2.47 7.47 -51.93 -0.39 2.08 16 44 H 0.05 0.99 8.10 -51.93 -0.42 0.57 16 LS Contribution 377.48 15.07 5.69 5.69 Total: -1.00 -30.21 377.48 -7.83 -38.04 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -5.88 Total: 6.77 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -1.93 Total: 2.20 kcal Atomic # 7 Polarization: -32.84 SS G_CDS: 0.35 Total: -32.49 kcal Atomic # 8 Polarization: -34.59 SS G_CDS: -1.03 Total: -35.63 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.21 -7.83 -38.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649233123.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.739 kcal (2) G-P(sol) polarization free energy of solvation -30.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds