Wall clock time and date at job start Tue Mar 31 2020 18:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46768 * 2 1 4 4 N 1.46504 * 109.47114 * 239.99779 * 2 1 3 5 5 C 1.34781 * 119.99560 * 85.27662 * 4 2 1 6 6 O 1.21549 * 120.00116 * 359.72365 * 5 4 2 7 7 C 1.47844 * 119.99732 * 179.72560 * 5 4 2 8 8 C 1.39575 * 120.14466 * 359.72068 * 7 5 4 9 9 C 1.37956 * 119.85087 * 179.79329 * 8 7 5 10 10 C 1.38365 * 120.14612 * 0.48821 * 9 8 7 11 11 C 1.38360 * 120.28979 * 359.73971 * 10 9 8 12 12 C 1.37956 * 120.14685 * 0.02900 * 11 10 9 13 13 C 1.50698 * 109.46970 * 120.00075 * 2 1 3 14 14 O 1.20827 * 120.00237 * 93.83591 * 13 2 1 15 15 O 1.34231 * 120.00160 * 273.82888 * 13 2 1 16 16 C 1.45198 * 116.99986 * 183.07488 * 15 13 2 17 17 C 1.53011 * 109.46940 * 176.16923 * 16 15 13 18 18 C 1.50702 * 112.99167 * 53.37381 * 17 16 15 19 19 H 1.08002 * 119.99669 * 244.50519 * 18 17 16 20 20 C 1.37878 * 120.00080 * 64.51913 * 18 17 16 21 21 N 1.31514 * 120.00115 * 5.72280 * 20 18 17 22 22 Si 1.86802 * 119.99716 * 185.73385 * 20 18 17 23 23 H 1.48500 * 109.47378 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47156 * 119.99490 * 22 20 18 25 25 H 1.48499 * 109.47130 * 239.99506 * 22 20 18 26 26 C 1.54024 * 113.81630 * 281.38931 * 17 16 15 27 27 O 1.44177 * 85.51830 * 223.19268 * 26 17 16 28 28 C 1.44182 * 93.33634 * 24.19227 * 27 26 17 29 29 H 1.09002 * 109.46991 * 63.88747 * 1 2 3 30 30 H 1.09003 * 109.46754 * 183.88604 * 1 2 3 31 31 H 1.08991 * 109.47069 * 303.88206 * 1 2 3 32 32 H 0.96995 * 120.00165 * 265.00289 * 4 2 1 33 33 H 1.08000 * 120.07583 * 0.02562 * 8 7 5 34 34 H 1.07998 * 119.92969 * 180.23026 * 9 8 7 35 35 H 1.08003 * 119.85143 * 179.72671 * 10 9 8 36 36 H 1.08002 * 119.92529 * 180.02562 * 11 10 9 37 37 H 1.07993 * 120.07278 * 179.97438 * 12 11 10 38 38 H 1.08993 * 109.47581 * 296.16876 * 16 15 13 39 39 H 1.09001 * 109.47110 * 56.17749 * 16 15 13 40 40 H 0.97000 * 119.99579 * 185.01114 * 21 20 18 41 41 H 1.08999 * 113.87127 * 337.33975 * 26 17 16 42 42 H 1.09000 * 113.86965 * 109.05128 * 26 17 16 43 43 H 1.09002 * 113.86469 * 221.65881 * 28 27 26 44 44 H 1.09004 * 113.98095 * 89.97292 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1962 5 6 2.1524 -0.0169 -2.3558 6 8 1.8633 1.1624 -2.4104 7 6 2.6509 -0.7124 -3.5614 8 6 2.9893 -2.0652 -3.5007 9 6 3.4498 -2.7092 -4.6304 10 6 3.5862 -2.0146 -5.8193 11 6 3.2571 -0.6723 -5.8850 12 6 2.7909 -0.0176 -4.7638 13 6 2.0323 -0.7104 1.2304 14 8 2.2997 -1.8877 1.1815 15 8 2.1829 -0.0353 2.3808 16 6 2.7356 -0.7666 3.5068 17 6 2.9206 0.1843 4.6912 18 6 1.6634 0.9368 5.0439 19 1 1.6295 2.0111 4.9379 20 6 0.5567 0.2539 5.5020 21 7 0.6323 -1.0376 5.7384 22 14 -1.0501 1.1631 5.7865 23 1 -0.8734 2.5983 5.4485 24 1 -2.1091 0.5781 4.9254 25 1 -1.4451 1.0358 7.2123 26 6 4.1726 1.0750 4.5841 27 8 4.3714 0.7685 5.9788 28 6 3.6205 -0.4599 5.9026 29 1 -0.3633 0.4523 -0.9228 30 1 -0.3633 -1.0254 0.0697 31 1 -0.3633 0.5729 0.8531 32 1 2.2490 -1.6318 -1.1526 33 1 2.8872 -2.6074 -2.5723 34 1 3.7084 -3.7568 -4.5858 35 1 3.9514 -2.5225 -6.6997 36 1 3.3655 -0.1360 -6.8162 37 1 2.5347 1.0302 -4.8164 38 1 2.0544 -1.5694 3.7885 39 1 3.7002 -1.1900 3.2268 40 1 -0.1633 -1.5318 5.9906 41 1 4.9457 0.6724 3.9296 42 1 3.9519 2.1247 4.3904 43 1 2.9617 -0.6277 6.7547 44 1 4.2231 -1.3327 5.6512 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649233123.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:19 Heat of formation + Delta-G solvation = -122.633196 kcal Electronic energy + Delta-G solvation = -28328.470994 eV Core-core repulsion = 24211.718213 eV Total energy + Delta-G solvation = -4116.752781 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.96490 -41.24973 -40.75799 -39.28258 -37.64459 -36.27330 -34.90066 -33.14446 -31.92204 -31.85665 -31.01113 -27.53253 -27.16524 -26.59851 -25.69653 -24.45314 -23.43147 -21.89622 -21.45636 -20.91245 -19.65029 -18.67758 -18.09156 -17.72489 -17.50981 -17.25294 -16.84345 -16.66197 -16.29384 -16.22587 -16.07424 -15.96024 -15.57714 -15.40586 -14.79775 -14.63134 -14.33168 -14.32666 -13.89058 -13.70763 -13.60755 -13.43592 -13.28749 -12.88828 -12.82187 -12.62421 -12.60548 -12.36713 -12.03392 -11.90539 -11.77375 -11.37459 -11.31623 -11.19472 -10.92659 -10.71247 -10.52442 -10.20002 -9.96533 -9.93988 -8.19196 -6.26789 -0.18448 0.40783 0.99599 1.38362 1.40109 1.44799 1.54675 1.75072 2.16896 2.41499 2.87936 2.99414 3.21696 3.42074 3.60365 3.86848 3.88463 3.97209 4.01404 4.05884 4.22736 4.24493 4.44575 4.46075 4.46419 4.50210 4.54314 4.56150 4.63763 4.74059 4.84091 5.02032 5.05201 5.06963 5.13615 5.20127 5.33081 5.43917 5.46318 5.47833 5.50376 5.58008 5.73264 5.93923 6.21457 6.27024 6.65556 6.73134 6.95470 7.39258 8.88020 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.017441 B = 0.002714 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.042757 B =10315.732002 C =10981.544871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.160 3.840 3 H 0.122 0.878 4 N -0.706 5.706 5 C 0.564 3.436 6 O -0.567 6.567 7 C -0.156 4.156 8 C -0.091 4.091 9 C -0.129 4.129 10 C -0.087 4.087 11 C -0.129 4.129 12 C -0.074 4.074 13 C 0.454 3.546 14 O -0.534 6.534 15 O -0.333 6.333 16 C 0.094 3.906 17 C 0.017 3.983 18 C -0.498 4.498 19 H 0.057 0.943 20 C 0.028 3.972 21 N -0.908 5.908 22 Si 0.947 3.053 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.284 1.284 26 C 0.035 3.965 27 O -0.402 6.402 28 C 0.054 3.946 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.415 0.585 33 H 0.135 0.865 34 H 0.155 0.845 35 H 0.159 0.841 36 H 0.154 0.846 37 H 0.128 0.872 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.264 0.736 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.077 -4.245 -22.493 23.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.053 3.947 3 H 0.139 0.861 4 N -0.362 5.362 5 C 0.353 3.647 6 O -0.447 6.447 7 C -0.159 4.159 8 C -0.110 4.110 9 C -0.147 4.147 10 C -0.105 4.105 11 C -0.147 4.147 12 C -0.093 4.093 13 C 0.297 3.703 14 O -0.425 6.425 15 O -0.247 6.247 16 C 0.020 3.980 17 C 0.016 3.984 18 C -0.536 4.536 19 H 0.075 0.925 20 C -0.172 4.172 21 N -0.547 5.547 22 Si 0.773 3.227 23 H -0.192 1.192 24 H -0.204 1.204 25 H -0.210 1.210 26 C -0.041 4.041 27 O -0.322 6.322 28 C -0.023 4.023 29 H 0.105 0.895 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.254 0.746 33 H 0.152 0.848 34 H 0.172 0.828 35 H 0.176 0.824 36 H 0.172 0.828 37 H 0.146 0.854 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.100 0.900 42 H 0.102 0.898 43 H 0.093 0.907 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.993 -3.754 -22.099 22.769 hybrid contribution -0.940 -0.373 0.728 1.246 sum 3.052 -4.126 -21.372 21.979 Atomic orbital electron populations 1.22056 0.90567 1.03700 1.04582 1.20296 0.96934 0.97574 0.79873 0.86061 1.45733 1.67343 1.14999 1.08094 1.18684 0.76618 0.86064 0.83292 1.90761 1.51743 1.16791 1.85362 1.19820 1.07053 0.95518 0.93545 1.21566 0.96529 0.92680 1.00200 1.21498 0.99309 1.01656 0.92227 1.21838 0.95709 0.94171 0.98816 1.21488 0.99066 0.95504 0.98642 1.21407 0.95858 1.00448 0.91606 1.23967 0.74219 0.86134 0.85952 1.90579 1.48659 1.17597 1.85656 1.86553 1.74076 1.44412 1.19638 1.23216 0.95978 0.95588 0.83252 1.21191 0.94499 0.92627 0.90064 1.20812 0.96251 0.93457 1.43047 0.92486 1.25533 1.01597 0.95812 0.94278 1.69976 1.29716 1.08055 1.46908 0.85657 0.80149 0.79326 0.77520 1.19234 1.20406 1.21032 1.24208 0.96074 1.01133 0.82686 1.89474 1.76712 1.38861 1.27132 1.23848 0.91394 0.86742 1.00297 0.89527 0.91406 0.90117 0.74608 0.84773 0.82782 0.82354 0.82796 0.85384 0.92163 0.92734 0.92699 0.89994 0.89830 0.90720 0.91159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.09 9.47 71.98 0.68 -3.41 16 2 C 0.16 4.75 3.08 44.25 0.14 4.89 16 3 H 0.12 3.69 7.57 -2.39 -0.02 3.67 16 4 N -0.71 -18.35 5.00 -448.96 -2.25 -20.60 16 5 C 0.56 15.16 7.74 86.79 0.67 15.84 16 6 O -0.57 -18.63 16.01 -3.87 -0.06 -18.69 16 7 C -0.16 -3.36 5.87 -20.09 -0.12 -3.48 16 8 C -0.09 -1.52 9.54 22.53 0.21 -1.31 16 9 C -0.13 -1.55 10.03 22.23 0.22 -1.33 16 10 C -0.09 -0.90 10.04 22.33 0.22 -0.67 16 11 C -0.13 -1.64 10.03 22.23 0.22 -1.42 16 12 C -0.07 -1.41 9.60 22.53 0.22 -1.19 16 13 C 0.45 16.53 7.16 71.24 0.51 17.04 16 14 O -0.53 -20.67 15.76 21.96 0.35 -20.32 16 15 O -0.33 -13.98 9.82 -51.43 -0.51 -14.49 16 16 C 0.09 4.16 4.67 71.99 0.34 4.50 16 17 C 0.02 0.79 0.62 -52.23 -0.03 0.75 16 18 C -0.50 -25.93 7.92 25.60 0.20 -25.72 16 19 H 0.06 3.01 7.82 -2.91 -0.02 2.99 16 20 C 0.03 1.46 5.25 84.65 0.44 1.90 16 21 N -0.91 -48.54 11.32 21.45 0.24 -48.29 16 22 Si 0.95 42.11 29.54 68.60 2.03 44.14 16 23 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 24 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 26 C 0.04 1.46 8.35 72.27 0.60 2.07 16 27 O -0.40 -18.55 12.40 -148.98 -1.85 -20.40 16 28 C 0.05 2.49 7.93 72.27 0.57 3.06 16 29 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.41 9.71 5.83 -92.71 -0.54 9.17 16 33 H 0.13 1.98 6.41 -2.91 -0.02 1.96 16 34 H 0.15 1.06 8.06 -2.91 -0.02 1.04 16 35 H 0.16 0.62 8.06 -2.91 -0.02 0.60 16 36 H 0.15 1.13 8.06 -2.91 -0.02 1.11 16 37 H 0.13 2.56 7.65 -2.91 -0.02 2.54 16 38 H 0.06 3.01 7.12 -2.39 -0.02 3.00 16 39 H 0.05 2.21 8.00 -2.39 -0.02 2.19 16 40 H 0.26 13.58 8.32 -92.71 -0.77 12.80 16 41 H 0.08 2.91 8.03 -2.39 -0.02 2.89 16 42 H 0.08 3.35 8.09 -2.39 -0.02 3.33 16 43 H 0.07 3.78 7.47 -2.39 -0.02 3.76 16 44 H 0.07 2.87 8.10 -2.38 -0.02 2.85 16 Total: -1.00 -64.93 377.48 3.55 -61.38 By element: Atomic # 1 Polarization: 25.28 SS G_CDS: 0.49 Total: 25.77 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: 5.11 Total: 11.51 kcal Atomic # 7 Polarization: -66.89 SS G_CDS: -2.00 Total: -68.89 kcal Atomic # 8 Polarization: -71.83 SS G_CDS: -2.07 Total: -73.90 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -64.93 3.55 -61.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649233123.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.258 kcal (2) G-P(sol) polarization free energy of solvation -64.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds