Wall clock time and date at job start Tue Mar 31 2020 18:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47214 * 2 1 4 4 C 1.50704 * 109.47204 * 120.00315 * 2 1 3 5 5 H 1.08000 * 119.99720 * 120.00051 * 4 2 1 6 6 C 1.37881 * 119.99886 * 299.99713 * 4 2 1 7 7 N 1.31508 * 119.99647 * 179.97438 * 6 4 2 8 8 Si 1.86798 * 119.99944 * 359.97438 * 6 4 2 9 9 H 1.48504 * 109.46811 * 90.00028 * 8 6 4 10 10 H 1.48496 * 109.46898 * 209.99904 * 8 6 4 11 11 H 1.48497 * 109.47085 * 330.00238 * 8 6 4 12 12 N 1.46907 * 109.46940 * 240.00148 * 2 1 3 13 13 C 1.46901 * 110.99697 * 306.04828 * 12 2 1 14 14 C 1.38381 * 110.99927 * 69.99925 * 12 2 1 15 15 N 1.31473 * 126.44008 * 293.15931 * 14 12 2 16 16 N 1.28423 * 110.50709 * 179.97438 * 15 14 12 17 17 N 1.28909 * 110.31641 * 359.97438 * 16 15 14 18 18 N 1.35309 * 126.43862 * 113.11474 * 14 12 2 19 19 C 1.46502 * 127.37904 * 0.02562 * 18 14 12 20 20 C 1.53001 * 109.47124 * 264.70546 * 19 18 14 21 21 S 1.81403 * 109.47227 * 180.02562 * 20 19 18 22 22 C 1.76193 * 103.00228 * 179.97438 * 21 20 19 23 23 C 1.38979 * 120.07961 * 359.72454 * 22 21 20 24 24 C 1.38082 * 119.92155 * 179.76918 * 23 22 21 25 25 C 1.38310 * 120.07687 * 0.48185 * 24 23 22 26 26 C 1.38302 * 120.15965 * 359.77249 * 25 24 23 27 27 C 1.38078 * 120.08124 * 359.97438 * 26 25 24 28 28 H 1.08998 * 109.47344 * 59.99668 * 1 2 3 29 29 H 1.08995 * 109.47289 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46980 * 300.00151 * 1 2 3 31 31 H 0.97006 * 119.99972 * 179.97438 * 7 6 4 32 32 H 1.09002 * 109.46869 * 191.65416 * 13 12 2 33 33 H 1.09000 * 109.46916 * 311.64792 * 13 12 2 34 34 H 1.08995 * 109.47256 * 71.65242 * 13 12 2 35 35 H 1.09003 * 109.47125 * 24.70493 * 19 18 14 36 36 H 1.09003 * 109.47246 * 144.70537 * 19 18 14 37 37 H 1.09003 * 109.47076 * 299.99977 * 20 19 18 38 38 H 1.08990 * 109.47386 * 60.00085 * 20 19 18 39 39 H 1.08005 * 120.03748 * 359.97438 * 23 22 21 40 40 H 1.07992 * 119.96216 * 180.22887 * 24 23 22 41 41 H 1.07998 * 119.91838 * 179.74358 * 25 24 23 42 42 H 1.07998 * 119.95755 * 179.97438 * 26 25 24 43 43 H 1.08001 * 120.03829 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2394 2.4828 7 7 2.1373 -0.8598 3.5565 8 14 0.6260 1.2798 2.6542 9 1 -0.8019 0.8744 2.6994 10 1 0.9774 1.9952 3.9071 11 1 0.8493 2.1772 1.4924 12 7 2.0196 -0.6925 -1.1995 13 6 1.4341 -2.0354 -1.3079 14 6 1.7683 0.0515 -2.3389 15 7 0.5874 0.3268 -2.8471 16 7 0.7094 1.0393 -3.9086 17 7 1.9542 1.2686 -4.1531 18 7 2.6917 0.6329 -3.1390 19 6 4.1480 0.6060 -2.9819 20 6 4.6045 1.8653 -2.2424 21 16 6.4079 1.8324 -2.0486 22 6 6.7419 3.3352 -1.1916 23 6 5.7002 4.1913 -0.8548 24 6 5.9652 5.3660 -0.1790 25 6 7.2665 5.6958 0.1538 26 6 8.3062 4.8488 -0.1844 27 6 8.0482 3.6700 -0.8556 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.9033 -0.5282 4.4375 32 1 1.9609 -2.6004 -2.0769 33 1 1.5264 -2.5502 -0.3515 34 1 0.3809 -1.9521 -1.5755 35 1 4.4355 -0.2759 -2.4094 36 1 4.6189 0.5708 -3.9644 37 1 4.3170 2.7472 -2.8149 38 1 4.1338 1.9005 -1.2601 39 1 4.6843 3.9366 -1.1183 40 1 5.1559 6.0299 0.0864 41 1 7.4713 6.6171 0.6787 42 1 9.3211 5.1097 0.0767 43 1 8.8606 3.0093 -1.1198 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650041008.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:40 Heat of formation + Delta-G solvation = 171.368977 kcal Electronic energy + Delta-G solvation = -26218.411526 eV Core-core repulsion = 22621.746009 eV Total energy + Delta-G solvation = -3596.665517 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.132 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.75910 -39.06985 -37.93058 -35.80080 -33.04829 -31.64899 -31.21266 -31.14469 -30.75673 -29.66680 -26.10946 -25.46059 -24.93058 -22.99519 -22.78754 -22.34274 -21.92520 -19.92926 -17.99597 -17.51735 -16.92557 -16.41743 -16.30763 -15.79578 -15.37341 -15.29181 -15.05606 -14.73857 -14.01697 -13.88378 -13.74789 -13.61275 -13.37213 -13.15990 -13.06920 -12.56392 -12.38347 -12.24130 -11.89118 -11.70233 -11.63368 -11.58436 -11.32993 -11.23109 -10.84358 -10.70487 -10.46018 -10.39226 -10.23909 -9.94195 -9.80081 -9.67097 -9.32241 -9.17304 -8.81098 -8.32137 -7.56374 -6.26722 -4.28452 0.94874 1.02500 1.18238 1.25492 2.01796 2.19100 2.51077 3.14470 3.24050 3.26568 3.53090 3.98232 4.22122 4.27278 4.36686 4.65202 4.73766 4.77234 4.89986 4.95938 5.04078 5.06778 5.19630 5.31399 5.44657 5.53742 5.56420 5.66081 5.73910 5.78392 5.93138 6.04158 6.06336 6.12789 6.18377 6.27196 6.31049 6.35741 6.47150 6.67686 6.70298 6.90621 7.23008 7.31453 7.60570 8.33183 8.71347 8.77090 9.32341 10.85062 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.009054 B = 0.004525 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3091.979560 B = 6186.821668 C = 8009.793310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.196 3.804 3 H 0.036 0.964 4 C -0.512 4.512 5 H 0.089 0.911 6 C 0.081 3.919 7 N -0.888 5.888 8 Si 0.881 3.119 9 H -0.275 1.275 10 H -0.294 1.294 11 H -0.272 1.272 12 N -0.460 5.460 13 C 0.036 3.964 14 C 0.438 3.562 15 N -0.352 5.352 16 N -0.043 5.043 17 N -0.097 5.097 18 N -0.372 5.372 19 C 0.151 3.849 20 C -0.133 4.133 21 S -0.084 6.084 22 C -0.080 4.080 23 C -0.130 4.130 24 C -0.099 4.099 25 C -0.126 4.126 26 C -0.103 4.103 27 C -0.100 4.100 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.047 0.953 31 H 0.268 0.732 32 H 0.055 0.945 33 H 0.105 0.895 34 H 0.046 0.954 35 H 0.126 0.874 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.105 0.895 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.127 0.873 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.097 7.504 -9.715 15.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.091 3.909 3 H 0.054 0.946 4 C -0.550 4.550 5 H 0.107 0.893 6 C -0.123 4.123 7 N -0.525 5.525 8 Si 0.711 3.289 9 H -0.202 1.202 10 H -0.221 1.221 11 H -0.197 1.197 12 N -0.187 5.187 13 C -0.111 4.111 14 C 0.072 3.928 15 N -0.209 5.209 16 N -0.039 5.039 17 N -0.083 5.083 18 N -0.171 5.171 19 C 0.027 3.973 20 C -0.283 4.283 21 S 0.160 5.840 22 C -0.193 4.193 23 C -0.154 4.154 24 C -0.118 4.118 25 C -0.147 4.147 26 C -0.122 4.122 27 C -0.124 4.124 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.123 0.877 34 H 0.064 0.936 35 H 0.144 0.856 36 H 0.128 0.872 37 H 0.115 0.885 38 H 0.124 0.876 39 H 0.141 0.859 40 H 0.143 0.857 41 H 0.142 0.858 42 H 0.145 0.855 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 10.453 7.054 -10.858 16.641 hybrid contribution -1.529 1.708 1.305 2.637 sum 8.925 8.761 -9.553 15.738 Atomic orbital electron populations 1.22910 0.99368 1.02249 1.00516 1.19904 0.90609 0.94530 0.85899 0.94621 1.20703 1.32831 1.14447 0.87039 0.89317 1.24796 0.95469 0.96412 0.95638 1.69837 1.44725 1.39891 0.98010 0.86970 0.81049 0.83776 0.77087 1.20167 1.22088 1.19694 1.59582 1.58882 1.02901 0.97317 1.22450 0.97683 0.86729 1.04217 1.23732 0.83922 0.92620 0.92556 1.75064 1.21030 1.17657 1.07132 1.77890 1.09744 1.08076 1.08154 1.82499 0.98913 1.17890 1.09014 1.51552 1.08708 1.37646 1.19191 1.21471 0.73693 0.99030 1.03079 1.24029 0.96400 1.01940 1.05887 1.85222 1.04830 1.23874 1.70087 1.21705 0.96835 0.97936 1.02852 1.21227 0.98142 0.95277 1.00728 1.21090 0.97096 0.96308 0.97351 1.21195 0.92785 0.99995 1.00675 1.21078 0.99346 0.93937 0.97872 1.20737 0.94501 0.97535 0.99602 0.92703 0.91891 0.93406 0.92218 0.92613 0.87690 0.93578 0.85637 0.87230 0.88483 0.87639 0.85943 0.85671 0.85801 0.85478 0.85373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.10 7.88 37.16 0.29 -3.80 16 2 C 0.20 4.31 1.87 -68.86 -0.13 4.18 16 3 H 0.04 0.83 7.11 -51.93 -0.37 0.47 16 4 C -0.51 -12.93 8.38 -34.44 -0.29 -13.22 16 5 H 0.09 2.40 7.44 -52.49 -0.39 2.01 16 6 C 0.08 2.15 5.45 -17.82 -0.10 2.05 16 7 N -0.89 -25.25 13.96 55.43 0.77 -24.48 16 8 Si 0.88 20.92 24.37 -169.99 -4.14 16.78 16 9 H -0.27 -6.42 6.87 56.52 0.39 -6.03 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 11 H -0.27 -6.31 6.53 56.52 0.37 -5.94 16 12 N -0.46 -8.65 4.68 -176.42 -0.83 -9.48 16 13 C 0.04 0.62 8.49 60.07 0.51 1.13 16 14 C 0.44 7.93 6.33 -320.42 -2.03 5.90 16 15 N -0.35 -6.80 9.76 30.10 0.29 -6.51 16 16 N -0.04 -0.80 13.38 60.35 0.81 0.01 16 17 N -0.10 -1.64 13.93 60.35 0.84 -0.80 16 18 N -0.37 -5.88 3.69 -61.86 -0.23 -6.11 16 19 C 0.15 1.85 6.52 -4.04 -0.03 1.82 16 20 C -0.13 -1.64 4.66 37.16 0.17 -1.47 16 21 S -0.08 -0.98 21.92 -107.50 -2.36 -3.34 16 22 C -0.08 -0.99 6.11 -39.04 -0.24 -1.23 16 23 C -0.13 -1.63 9.36 -39.36 -0.37 -2.00 16 24 C -0.10 -1.10 10.04 -39.61 -0.40 -1.50 16 25 C -0.13 -1.24 10.04 -39.53 -0.40 -1.63 16 26 C -0.10 -0.99 10.04 -39.62 -0.40 -1.38 16 27 C -0.10 -1.09 9.79 -39.37 -0.39 -1.47 16 28 H 0.05 1.14 6.00 -51.93 -0.31 0.83 16 29 H 0.06 1.28 6.59 -51.93 -0.34 0.94 16 30 H 0.05 1.07 3.27 -51.93 -0.17 0.90 16 31 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.10 1.89 6.62 -51.93 -0.34 1.55 16 34 H 0.05 0.78 6.66 -51.93 -0.35 0.43 16 35 H 0.13 1.51 8.10 -51.93 -0.42 1.09 16 36 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.10 1.15 7.73 -51.92 -0.40 0.75 16 38 H 0.11 1.53 7.76 -51.93 -0.40 1.13 16 39 H 0.12 1.53 5.88 -52.48 -0.31 1.22 16 40 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 41 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 42 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 43 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 LS Contribution 361.18 15.07 5.44 5.44 Total: -1.00 -29.31 361.18 -8.70 -38.01 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -5.53 Total: 3.10 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: -3.78 Total: -12.63 kcal Atomic # 7 Polarization: -49.02 SS G_CDS: 1.66 Total: -47.36 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.14 Total: 16.78 kcal Atomic # 16 Polarization: -0.98 SS G_CDS: -2.36 Total: -3.34 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.31 -8.70 -38.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650041008.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.381 kcal (2) G-P(sol) polarization free energy of solvation -29.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 180.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 171.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds