Wall clock time and date at job start Tue Mar 31 2020 18:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46505 * 109.46966 * 2 1 4 4 C 1.47092 * 125.55871 * 270.02291 * 3 2 1 5 5 C 1.54085 * 103.77554 * 179.97438 * 4 3 2 6 6 H 1.09005 * 110.64073 * 118.69070 * 5 4 3 7 7 C 1.52998 * 110.52277 * 241.37145 * 5 4 3 8 8 O 1.45207 * 109.47171 * 181.04360 * 7 5 4 9 9 C 1.34225 * 117.00089 * 180.02562 * 8 7 5 10 10 O 1.20831 * 119.99796 * 359.97438 * 9 8 7 11 11 C 1.50699 * 120.00267 * 180.02562 * 9 8 7 12 12 C 1.50695 * 109.47536 * 179.97438 * 11 9 8 13 13 C 1.37635 * 120.12922 * 265.00277 * 12 11 9 14 14 C 1.38616 * 120.25180 * 180.25337 * 13 12 11 15 15 C 1.38657 * 120.49769 * 359.43991 * 14 13 12 16 16 C 1.37599 * 120.24996 * 0.55619 * 15 14 13 17 17 C 1.40698 * 120.12832 * 84.97317 * 12 11 9 18 18 C 1.41401 * 120.24306 * 0.02562 * 17 12 11 19 19 H 1.07996 * 120.00140 * 329.78968 * 18 17 12 20 20 C 1.39943 * 119.99611 * 149.79577 * 18 17 12 21 21 N 1.30828 * 120.00177 * 162.08912 * 20 18 17 22 22 Si 1.86803 * 120.00186 * 342.08044 * 20 18 17 23 23 H 1.48499 * 109.47049 * 95.39710 * 22 20 18 24 24 H 1.48502 * 109.46957 * 215.39592 * 22 20 18 25 25 H 1.48500 * 109.46884 * 335.39299 * 22 20 18 26 26 O 1.45701 * 104.00902 * 0.02562 * 5 4 3 27 27 C 1.33763 * 109.47573 * 359.97438 * 26 5 4 28 28 O 1.21514 * 123.07045 * 179.97438 * 27 26 5 29 29 H 1.08997 * 109.47015 * 299.99661 * 1 2 3 30 30 H 1.09000 * 109.47361 * 59.99994 * 1 2 3 31 31 H 1.09008 * 109.46875 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47015 * 240.00339 * 2 1 3 33 33 H 1.09000 * 109.47361 * 120.00006 * 2 1 3 34 34 H 1.09003 * 110.56074 * 61.42690 * 4 3 2 35 35 H 1.08997 * 110.56569 * 298.57985 * 4 3 2 36 36 H 1.09002 * 109.47186 * 61.04738 * 7 5 4 37 37 H 1.08998 * 109.47289 * 301.04336 * 7 5 4 38 38 H 1.09000 * 109.47260 * 59.99481 * 11 9 8 39 39 H 1.09001 * 109.46662 * 299.99748 * 11 9 8 40 40 H 1.08001 * 119.87405 * 359.96977 * 13 12 11 41 41 H 1.07997 * 119.74655 * 179.69995 * 14 13 12 42 42 H 1.07999 * 119.87349 * 180.30786 * 15 14 13 43 43 H 1.07999 * 120.12771 * 179.75037 * 16 15 14 44 44 H 0.96989 * 120.00516 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3029 2.1879 -1.1966 5 6 2.7794 3.5371 -0.6248 6 1 3.8025 3.7469 -0.9371 7 6 1.8441 4.6657 -1.0631 8 8 2.3274 5.9282 -0.5329 9 6 1.6137 7.0261 -0.8278 10 8 0.6183 6.9354 -1.5068 11 6 2.0544 8.3721 -0.3129 12 6 1.0895 9.4302 -0.7824 13 6 1.3545 10.1483 -1.9263 14 6 0.4713 11.1257 -2.3576 15 6 -0.6931 11.3836 -1.6503 16 6 -0.9785 10.6780 -0.5040 17 6 -0.0861 9.6873 -0.0535 18 6 -0.3690 8.9558 1.1231 19 1 -0.0183 7.9394 1.2244 20 6 -1.1034 9.5490 2.1562 21 7 -1.6646 8.8023 3.0721 22 14 -1.2822 11.4071 2.2275 23 1 -2.5578 11.8068 1.5809 24 1 -1.2856 11.8500 3.6450 25 1 -0.1451 12.0415 1.5135 26 8 2.7146 3.3509 0.8188 27 6 2.2783 2.1159 1.0901 28 8 2.1318 1.6981 2.2217 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.3995 2.3222 -1.7916 35 1 3.0895 1.7248 -1.7924 36 1 0.8402 4.4733 -0.6847 37 1 1.8189 4.7147 -2.1517 38 1 3.0517 8.5970 -0.6909 39 1 2.0740 8.3556 0.7768 40 1 2.2563 9.9526 -2.4875 41 1 0.6897 11.6876 -3.2536 42 1 -1.3766 12.1440 -1.9982 43 1 -1.8840 10.8833 0.0476 44 1 -2.1733 9.2133 3.7884 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771769029.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:52 Heat of formation + Delta-G solvation = -136.056918 kcal Electronic energy + Delta-G solvation = -28327.561247 eV Core-core repulsion = 24210.226369 eV Total energy + Delta-G solvation = -4117.334877 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.82635 -39.98938 -37.98319 -37.42235 -36.18225 -35.90925 -33.61934 -32.38449 -31.95703 -30.69137 -30.36216 -27.54324 -26.10426 -24.87846 -24.23628 -22.82164 -21.63177 -21.20124 -20.77829 -19.45915 -17.70836 -17.47569 -17.38304 -17.05434 -17.00252 -16.11950 -15.86584 -15.41909 -15.31565 -14.56741 -14.47362 -14.26052 -13.97648 -13.97125 -13.81528 -13.69672 -12.87811 -12.80776 -12.65697 -12.60717 -12.33745 -12.25330 -12.13338 -11.92007 -11.48582 -11.45970 -11.24707 -10.84106 -10.81314 -10.76792 -10.70793 -10.46917 -10.27534 -9.87563 -9.74135 -9.60118 -9.27399 -9.14761 -7.66235 -7.56476 -6.95070 -4.51807 2.15902 2.41108 2.59833 2.68054 2.83985 2.99671 3.11695 3.16800 3.23135 3.31914 3.86891 3.97694 4.20015 4.27406 4.50227 4.58859 4.78910 4.81758 4.98238 4.99919 5.10329 5.16413 5.30153 5.35954 5.42936 5.57332 5.69467 5.80165 5.87546 5.89347 6.03801 6.14667 6.15170 6.26915 6.51687 6.68051 6.79180 6.91829 7.16325 7.16752 7.39667 7.61171 7.70592 7.85995 7.87415 8.09895 8.30397 8.36620 8.63355 8.78585 10.06792 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014808 B = 0.002967 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.411139 B = 9433.829739 C =10525.614013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.144 3.856 3 N -0.634 5.634 4 C 0.074 3.926 5 C 0.074 3.926 6 H 0.128 0.872 7 C 0.058 3.942 8 O -0.357 6.357 9 C 0.463 3.537 10 O -0.492 6.492 11 C -0.044 4.044 12 C -0.183 4.183 13 C -0.063 4.063 14 C -0.245 4.245 15 C -0.076 4.076 16 C -0.233 4.233 17 C 0.110 3.890 18 C -0.445 4.445 19 H 0.088 0.912 20 C 0.085 3.915 21 N -0.803 5.803 22 Si 0.911 3.089 23 H -0.271 1.271 24 H -0.291 1.291 25 H -0.243 1.243 26 O -0.309 6.309 27 C 0.640 3.360 28 O -0.519 6.519 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.113 0.887 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.100 0.900 44 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.518 -13.103 -9.538 18.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.024 3.976 3 N -0.384 5.384 4 C -0.049 4.049 5 C 0.018 3.982 6 H 0.146 0.854 7 C -0.017 4.017 8 O -0.275 6.275 9 C 0.305 3.695 10 O -0.377 6.377 11 C -0.081 4.081 12 C -0.184 4.184 13 C -0.082 4.082 14 C -0.264 4.264 15 C -0.094 4.094 16 C -0.252 4.252 17 C 0.107 3.893 18 C -0.473 4.473 19 H 0.106 0.894 20 C -0.135 4.135 21 N -0.427 5.427 22 Si 0.738 3.262 23 H -0.197 1.197 24 H -0.218 1.218 25 H -0.166 1.166 26 O -0.218 6.218 27 C 0.395 3.605 28 O -0.403 6.403 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.114 0.886 35 H 0.119 0.881 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.131 0.869 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.118 0.882 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.049 -13.298 -8.736 17.830 hybrid contribution -0.544 0.597 -0.155 0.822 sum 7.505 -12.701 -8.891 17.225 Atomic orbital electron populations 1.22225 0.95372 1.02715 1.03081 1.21283 0.94523 0.78230 1.03603 1.48168 1.69445 1.15157 1.05619 1.22741 1.03208 0.89581 0.89389 1.23874 1.02631 0.93955 0.77763 0.85410 1.23184 0.97721 0.81410 0.99390 1.86573 1.54359 1.15482 1.71107 1.24433 0.81478 0.86018 0.77523 1.90656 1.24917 1.86369 1.35738 1.20008 0.98829 0.85619 1.03646 1.19045 0.96998 1.01976 1.00385 1.20446 0.97571 0.95564 0.94571 1.20331 0.98334 1.04812 1.02955 1.20626 0.96015 0.97627 0.95167 1.21009 1.00793 1.03879 0.99491 1.17485 0.89207 0.90172 0.92411 1.19453 1.28225 1.01007 0.98622 0.89358 1.26182 0.91293 1.01313 0.94678 1.69704 1.22796 1.38731 1.11428 0.86317 0.80904 0.82385 0.76639 1.19705 1.21810 1.16564 1.87477 1.79405 1.30033 1.24905 1.18626 0.76611 0.79777 0.85529 1.91044 1.57045 1.71595 1.20649 0.91754 0.92197 0.90953 0.89754 0.89342 0.88594 0.88140 0.90204 0.88911 0.88938 0.86865 0.88887 0.88869 0.88893 0.88203 0.90384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.33 10.24 37.16 0.38 -0.95 16 2 C 0.14 1.06 6.73 -4.04 -0.03 1.03 16 3 N -0.63 -6.34 2.96 -178.85 -0.53 -6.87 16 4 C 0.07 0.50 7.34 -3.15 -0.02 0.48 16 5 C 0.07 0.73 4.16 -26.17 -0.11 0.62 16 6 H 0.13 0.92 8.14 -51.93 -0.42 0.50 16 7 C 0.06 0.73 5.01 37.16 0.19 0.92 16 8 O -0.36 -5.90 10.22 -40.60 -0.41 -6.32 16 9 C 0.46 9.04 7.57 36.01 0.27 9.32 16 10 O -0.49 -11.08 15.78 -18.75 -0.30 -11.38 16 11 C -0.04 -0.84 5.30 -29.04 -0.15 -0.99 16 12 C -0.18 -4.11 4.43 -103.92 -0.46 -4.57 16 13 C -0.06 -1.31 9.66 -39.66 -0.38 -1.70 16 14 C -0.25 -5.10 10.05 -39.29 -0.39 -5.50 16 15 C -0.08 -1.67 10.02 -39.66 -0.40 -2.07 16 16 C -0.23 -5.71 7.17 -38.87 -0.28 -5.98 16 17 C 0.11 2.80 5.10 -106.82 -0.54 2.25 16 18 C -0.44 -12.01 8.56 -37.74 -0.32 -12.33 16 19 H 0.09 2.53 7.00 -52.49 -0.37 2.16 16 20 C 0.08 2.24 5.41 -17.34 -0.09 2.15 16 21 N -0.80 -21.73 13.93 55.55 0.77 -20.96 16 22 Si 0.91 20.84 24.52 -169.99 -4.17 16.68 16 23 H -0.27 -6.06 6.71 56.52 0.38 -5.68 16 24 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.24 -5.61 6.86 56.52 0.39 -5.23 16 26 O -0.31 -4.62 10.80 -39.20 -0.42 -5.04 16 27 C 0.64 9.52 8.85 53.71 0.48 10.00 16 28 O -0.52 -9.71 17.54 -19.12 -0.34 -10.04 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.41 8.14 -51.92 -0.42 -0.02 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.09 0.72 7.93 -51.93 -0.41 0.31 16 34 H 0.10 0.53 7.73 -51.93 -0.40 0.12 16 35 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 1.16 8.13 -51.93 -0.42 0.74 16 37 H 0.09 0.94 8.13 -51.93 -0.42 0.52 16 38 H 0.09 1.42 8.05 -51.93 -0.42 1.00 16 39 H 0.11 2.23 7.14 -51.93 -0.37 1.86 16 40 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 41 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 42 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 43 H 0.10 2.45 4.77 -52.49 -0.25 2.20 16 44 H 0.29 7.01 8.30 -40.82 -0.34 6.67 16 LS Contribution 372.22 15.07 5.61 5.61 Total: -1.00 -34.90 372.22 -7.70 -42.60 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -6.04 Total: 3.06 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -1.87 Total: -7.33 kcal Atomic # 7 Polarization: -28.07 SS G_CDS: 0.24 Total: -27.82 kcal Atomic # 8 Polarization: -31.31 SS G_CDS: -1.47 Total: -32.78 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.17 Total: 16.68 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.90 -7.70 -42.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771769029.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.461 kcal (2) G-P(sol) polarization free energy of solvation -34.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds