Wall clock time and date at job start Tue Mar 31 2020 18:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46505 * 109.46966 * 2 1 4 4 C 1.47092 * 125.55871 * 270.02291 * 3 2 1 5 5 C 1.54085 * 103.77554 * 179.97438 * 4 3 2 6 6 H 1.09005 * 110.64073 * 118.69070 * 5 4 3 7 7 C 1.52998 * 110.52277 * 241.37145 * 5 4 3 8 8 O 1.45207 * 109.47171 * 181.04360 * 7 5 4 9 9 C 1.34225 * 117.00089 * 180.02562 * 8 7 5 10 10 O 1.20831 * 119.99796 * 359.97438 * 9 8 7 11 11 C 1.50699 * 120.00267 * 180.02562 * 9 8 7 12 12 C 1.50695 * 109.47536 * 179.97438 * 11 9 8 13 13 C 1.37635 * 120.12922 * 265.00277 * 12 11 9 14 14 C 1.38616 * 120.25180 * 180.25337 * 13 12 11 15 15 C 1.38657 * 120.49769 * 359.43991 * 14 13 12 16 16 C 1.37599 * 120.24996 * 0.55619 * 15 14 13 17 17 C 1.40698 * 120.12832 * 84.97317 * 12 11 9 18 18 C 1.41401 * 120.24306 * 0.02562 * 17 12 11 19 19 H 1.07996 * 120.00140 * 329.78968 * 18 17 12 20 20 C 1.39943 * 119.99611 * 149.79577 * 18 17 12 21 21 N 1.30828 * 120.00177 * 162.08912 * 20 18 17 22 22 Si 1.86803 * 120.00186 * 342.08044 * 20 18 17 23 23 H 1.48499 * 109.47049 * 95.39710 * 22 20 18 24 24 H 1.48502 * 109.46957 * 215.39592 * 22 20 18 25 25 H 1.48500 * 109.46884 * 335.39299 * 22 20 18 26 26 O 1.45701 * 104.00902 * 0.02562 * 5 4 3 27 27 C 1.33763 * 109.47573 * 359.97438 * 26 5 4 28 28 O 1.21514 * 123.07045 * 179.97438 * 27 26 5 29 29 H 1.08997 * 109.47015 * 299.99661 * 1 2 3 30 30 H 1.09000 * 109.47361 * 59.99994 * 1 2 3 31 31 H 1.09008 * 109.46875 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47015 * 240.00339 * 2 1 3 33 33 H 1.09000 * 109.47361 * 120.00006 * 2 1 3 34 34 H 1.09003 * 110.56074 * 61.42690 * 4 3 2 35 35 H 1.08997 * 110.56569 * 298.57985 * 4 3 2 36 36 H 1.09002 * 109.47186 * 61.04738 * 7 5 4 37 37 H 1.08998 * 109.47289 * 301.04336 * 7 5 4 38 38 H 1.09000 * 109.47260 * 59.99481 * 11 9 8 39 39 H 1.09001 * 109.46662 * 299.99748 * 11 9 8 40 40 H 1.08001 * 119.87405 * 359.96977 * 13 12 11 41 41 H 1.07997 * 119.74655 * 179.69995 * 14 13 12 42 42 H 1.07999 * 119.87349 * 180.30786 * 15 14 13 43 43 H 1.07999 * 120.12771 * 179.75037 * 16 15 14 44 44 H 0.96989 * 120.00516 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3029 2.1879 -1.1966 5 6 2.7794 3.5371 -0.6248 6 1 3.8025 3.7469 -0.9371 7 6 1.8441 4.6657 -1.0631 8 8 2.3274 5.9282 -0.5329 9 6 1.6137 7.0261 -0.8278 10 8 0.6183 6.9354 -1.5068 11 6 2.0544 8.3721 -0.3129 12 6 1.0895 9.4302 -0.7824 13 6 1.3545 10.1483 -1.9263 14 6 0.4713 11.1257 -2.3576 15 6 -0.6931 11.3836 -1.6503 16 6 -0.9785 10.6780 -0.5040 17 6 -0.0861 9.6873 -0.0535 18 6 -0.3690 8.9558 1.1231 19 1 -0.0183 7.9394 1.2244 20 6 -1.1034 9.5490 2.1562 21 7 -1.6646 8.8023 3.0721 22 14 -1.2822 11.4071 2.2275 23 1 -2.5578 11.8068 1.5809 24 1 -1.2856 11.8500 3.6450 25 1 -0.1451 12.0415 1.5135 26 8 2.7146 3.3509 0.8188 27 6 2.2783 2.1159 1.0901 28 8 2.1318 1.6981 2.2217 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.3995 2.3222 -1.7916 35 1 3.0895 1.7248 -1.7924 36 1 0.8402 4.4733 -0.6847 37 1 1.8189 4.7147 -2.1517 38 1 3.0517 8.5970 -0.6909 39 1 2.0740 8.3556 0.7768 40 1 2.2563 9.9526 -2.4875 41 1 0.6897 11.6876 -3.2536 42 1 -1.3766 12.1440 -1.9982 43 1 -1.8840 10.8833 0.0476 44 1 -2.1733 9.2133 3.7884 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771769029.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:51 Heat of formation + Delta-G solvation = -158.636206 kcal Electronic energy + Delta-G solvation = -28328.540358 eV Core-core repulsion = 24210.226369 eV Total energy + Delta-G solvation = -4118.313989 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.79111 -41.47815 -39.65933 -38.62836 -37.38038 -37.02512 -35.52413 -33.76217 -33.06175 -32.20427 -31.55928 -29.07186 -27.22060 -26.57885 -25.03358 -23.73595 -23.29362 -22.76211 -21.75861 -21.10841 -19.29345 -18.83739 -18.45639 -18.33003 -18.01401 -17.60509 -17.34996 -16.83425 -16.38651 -16.14506 -15.89408 -15.51435 -15.33907 -14.95446 -14.91097 -14.62528 -14.60374 -14.08215 -13.96060 -13.80499 -13.62549 -13.36152 -13.29260 -13.14124 -12.93605 -12.83130 -12.72175 -12.53703 -12.18999 -12.01867 -11.85506 -11.82428 -11.75834 -11.56367 -11.47113 -11.38862 -10.99495 -10.04984 -9.42503 -9.35930 -8.89670 -6.50816 0.70612 0.88677 1.25231 1.28178 1.34064 1.39091 1.48301 1.50099 1.77232 2.11256 2.34500 2.62275 3.09526 3.28744 3.54658 3.59218 3.87024 3.97225 4.13097 4.16853 4.24433 4.27932 4.32393 4.35188 4.44421 4.46087 4.53004 4.54252 4.65181 4.71245 4.78546 4.90654 4.92917 5.04502 5.13818 5.23735 5.33329 5.34547 5.39407 5.64981 5.84010 5.91888 6.02304 6.21636 6.25633 6.42885 6.74879 6.82992 6.84458 6.86602 8.18779 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.014808 B = 0.002967 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.411139 B = 9433.829739 C =10525.614013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.138 3.862 3 N -0.623 5.623 4 C 0.079 3.921 5 C 0.072 3.928 6 H 0.164 0.836 7 C 0.050 3.950 8 O -0.358 6.358 9 C 0.468 3.532 10 O -0.529 6.529 11 C -0.048 4.048 12 C -0.185 4.185 13 C -0.069 4.069 14 C -0.228 4.228 15 C -0.086 4.086 16 C -0.255 4.255 17 C 0.085 3.915 18 C -0.476 4.476 19 H 0.050 0.950 20 C 0.045 3.955 21 N -0.855 5.855 22 Si 0.967 3.033 23 H -0.264 1.264 24 H -0.280 1.280 25 H -0.246 1.246 26 O -0.345 6.345 27 C 0.629 3.371 28 O -0.577 6.577 29 H 0.024 0.976 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.132 0.868 33 H 0.075 0.925 34 H 0.114 0.886 35 H 0.153 0.847 36 H 0.051 0.949 37 H 0.127 0.873 38 H 0.139 0.861 39 H 0.098 0.902 40 H 0.135 0.865 41 H 0.133 0.867 42 H 0.124 0.876 43 H 0.091 0.909 44 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.543 -12.579 -13.830 21.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.019 3.981 3 N -0.371 5.371 4 C -0.043 4.043 5 C 0.017 3.983 6 H 0.181 0.819 7 C -0.024 4.024 8 O -0.275 6.275 9 C 0.313 3.687 10 O -0.418 6.418 11 C -0.085 4.085 12 C -0.187 4.187 13 C -0.087 4.087 14 C -0.246 4.246 15 C -0.104 4.104 16 C -0.274 4.274 17 C 0.082 3.918 18 C -0.506 4.506 19 H 0.068 0.932 20 C -0.169 4.169 21 N -0.481 5.481 22 Si 0.791 3.209 23 H -0.190 1.190 24 H -0.206 1.206 25 H -0.169 1.169 26 O -0.255 6.255 27 C 0.384 3.616 28 O -0.465 6.465 29 H 0.043 0.957 30 H 0.086 0.914 31 H 0.113 0.887 32 H 0.150 0.850 33 H 0.094 0.906 34 H 0.132 0.868 35 H 0.170 0.830 36 H 0.069 0.931 37 H 0.145 0.855 38 H 0.157 0.843 39 H 0.116 0.884 40 H 0.153 0.847 41 H 0.151 0.849 42 H 0.142 0.858 43 H 0.109 0.891 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 10.092 -12.788 -13.078 20.891 hybrid contribution -1.061 0.405 0.884 1.439 sum 9.031 -12.383 -12.194 19.585 Atomic orbital electron populations 1.22216 0.95720 1.03733 1.01467 1.21596 0.94214 0.76996 1.05309 1.48365 1.67727 1.15768 1.05287 1.23124 1.05772 0.87246 0.88113 1.24310 1.03915 0.94531 0.75533 0.81916 1.23600 0.97188 0.80390 1.01239 1.86530 1.53715 1.16269 1.71031 1.24344 0.80865 0.86894 0.76632 1.90631 1.26325 1.87067 1.37744 1.20078 1.00419 0.85146 1.02861 1.19467 0.96396 1.02347 1.00445 1.20943 0.99131 0.94716 0.93910 1.20925 0.96925 1.03597 1.03183 1.21029 0.97275 0.97927 0.94172 1.21149 1.00678 1.04719 1.00892 1.17715 0.90752 0.90883 0.92423 1.19358 1.30579 1.00026 1.00589 0.93185 1.26878 0.90868 1.05009 0.94119 1.69757 1.25129 1.40318 1.12923 0.85460 0.80733 0.77695 0.77031 1.18974 1.20632 1.16906 1.87418 1.79359 1.30473 1.28219 1.18925 0.76653 0.80044 0.85996 1.90977 1.59600 1.72782 1.23177 0.95655 0.91402 0.88687 0.84965 0.90630 0.86764 0.82980 0.93070 0.85537 0.84337 0.88406 0.84722 0.84889 0.85818 0.89112 0.89808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.49 10.24 71.98 0.74 -1.75 16 2 C 0.14 1.79 6.73 86.38 0.58 2.37 16 3 N -0.62 -11.61 2.96 -951.49 -2.82 -14.43 16 4 C 0.08 0.78 7.34 86.63 0.64 1.42 16 5 C 0.07 1.28 4.16 30.96 0.13 1.41 16 6 H 0.16 1.74 8.14 -2.38 -0.02 1.72 16 7 C 0.05 1.22 5.01 71.98 0.36 1.58 16 8 O -0.36 -11.76 10.22 -50.08 -0.51 -12.27 16 9 C 0.47 18.36 7.57 71.24 0.54 18.90 16 10 O -0.53 -24.14 15.78 21.95 0.35 -23.79 16 11 C -0.05 -1.82 5.30 29.10 0.15 -1.66 16 12 C -0.19 -8.15 4.43 -19.41 -0.09 -8.23 16 13 C -0.07 -2.60 9.66 22.22 0.21 -2.39 16 14 C -0.23 -8.42 10.05 22.46 0.23 -8.19 16 15 C -0.09 -3.53 10.02 22.22 0.22 -3.30 16 16 C -0.26 -12.41 7.17 22.73 0.16 -12.25 16 17 C 0.08 4.37 5.10 -21.29 -0.11 4.26 16 18 C -0.48 -27.29 8.56 23.46 0.20 -27.09 16 19 H 0.05 3.13 7.00 -2.91 -0.02 3.11 16 20 C 0.05 2.51 5.41 85.26 0.46 2.97 16 21 N -0.85 -49.37 13.93 21.83 0.30 -49.07 16 22 Si 0.97 44.28 24.52 68.60 1.68 45.96 16 23 H -0.26 -11.61 6.71 99.48 0.67 -10.94 16 24 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 25 H -0.25 -11.19 6.86 99.48 0.68 -10.50 16 26 O -0.34 -10.60 10.80 -45.92 -0.50 -11.10 16 27 C 0.63 19.44 8.85 129.91 1.15 20.59 16 28 O -0.58 -23.25 17.54 19.64 0.34 -22.91 16 29 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.08 1.21 7.93 -2.39 -0.02 1.19 16 34 H 0.11 0.80 7.73 -2.39 -0.02 0.78 16 35 H 0.15 0.11 8.14 -2.39 -0.02 0.09 16 36 H 0.05 1.55 8.13 -2.39 -0.02 1.53 16 37 H 0.13 2.23 8.13 -2.39 -0.02 2.21 16 38 H 0.14 3.84 8.05 -2.39 -0.02 3.82 16 39 H 0.10 4.03 7.14 -2.39 -0.02 4.02 16 40 H 0.13 3.94 8.06 -2.91 -0.02 3.92 16 41 H 0.13 3.91 8.06 -2.91 -0.02 3.89 16 42 H 0.12 4.25 8.06 -2.91 -0.02 4.22 16 43 H 0.09 4.48 4.77 -2.91 -0.01 4.47 16 44 H 0.29 15.21 8.30 -92.72 -0.77 14.44 16 Total: -1.00 -84.99 372.22 5.38 -79.60 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: 0.95 Total: 19.37 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: 5.58 Total: -11.37 kcal Atomic # 7 Polarization: -60.98 SS G_CDS: -2.51 Total: -63.50 kcal Atomic # 8 Polarization: -69.75 SS G_CDS: -0.32 Total: -70.07 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.68 Total: 45.96 kcal Total: -84.99 5.38 -79.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771769029.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.033 kcal (2) G-P(sol) polarization free energy of solvation -84.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds