Wall clock time and date at job start Tue Mar 31 2020 18:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47186 * 2 1 4 4 C 1.47092 * 125.55786 * 269.97566 * 3 2 1 5 5 C 1.54092 * 103.77547 * 179.97438 * 4 3 2 6 6 H 1.08999 * 110.64208 * 241.30608 * 5 4 3 7 7 C 1.53007 * 110.51912 * 118.63196 * 5 4 3 8 8 O 1.45196 * 109.46901 * 178.95879 * 7 5 4 9 9 C 1.34231 * 116.99870 * 179.97438 * 8 7 5 10 10 O 1.20820 * 120.00406 * 359.97438 * 9 8 7 11 11 C 1.50707 * 119.99887 * 180.02562 * 9 8 7 12 12 C 1.50704 * 109.46977 * 180.02562 * 11 9 8 13 13 C 1.37642 * 120.12336 * 264.72271 * 12 11 9 14 14 C 1.38610 * 120.24599 * 179.69991 * 13 12 11 15 15 C 1.38651 * 120.50097 * 0.60142 * 14 13 12 16 16 C 1.37596 * 120.25166 * 359.67469 * 15 14 13 17 17 C 1.40684 * 120.13127 * 84.99324 * 12 11 9 18 18 C 1.41398 * 120.24856 * 0.02738 * 17 12 11 19 19 H 1.08005 * 119.99574 * 334.05231 * 18 17 12 20 20 C 1.39943 * 120.00631 * 154.04691 * 18 17 12 21 21 N 1.30829 * 119.99926 * 343.66033 * 20 18 17 22 22 Si 1.86800 * 120.00141 * 163.66315 * 20 18 17 23 23 H 1.48496 * 109.47268 * 90.00044 * 22 20 18 24 24 H 1.48501 * 109.46632 * 209.99968 * 22 20 18 25 25 H 1.48502 * 109.47052 * 329.99569 * 22 20 18 26 26 O 1.45696 * 104.01046 * 0.02562 * 5 4 3 27 27 C 1.33772 * 109.47629 * 359.97438 * 26 5 4 28 28 O 1.21508 * 123.07452 * 179.97438 * 27 26 5 29 29 H 1.09004 * 109.47254 * 300.00044 * 1 2 3 30 30 H 1.08999 * 109.46887 * 59.99941 * 1 2 3 31 31 H 1.08996 * 109.47071 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47269 * 239.99740 * 2 1 3 33 33 H 1.08998 * 109.47253 * 119.99661 * 2 1 3 34 34 H 1.09000 * 110.56770 * 61.42989 * 4 3 2 35 35 H 1.09003 * 110.56543 * 298.57298 * 4 3 2 36 36 H 1.08997 * 109.47288 * 58.95683 * 7 5 4 37 37 H 1.08999 * 109.46907 * 298.95560 * 7 5 4 38 38 H 1.09001 * 109.46579 * 299.99474 * 11 9 8 39 39 H 1.08995 * 109.47402 * 59.99513 * 11 9 8 40 40 H 1.07999 * 119.87346 * 359.97438 * 13 12 11 41 41 H 1.07997 * 119.74942 * 180.29791 * 14 13 12 42 42 H 1.08002 * 119.87647 * 179.70676 * 15 14 13 43 43 H 1.08001 * 120.13278 * 180.02562 * 16 15 14 44 44 H 0.96997 * 119.99852 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3039 2.1875 -1.1966 5 6 2.7801 3.5369 -0.6248 6 1 2.1159 4.3426 -0.9376 7 6 4.2170 3.8278 -1.0626 8 8 4.6335 5.1138 -0.5325 9 6 5.8785 5.5200 -0.8268 10 8 6.5967 4.8239 -1.5046 11 6 6.3809 6.8439 -0.3109 12 6 7.7965 7.0613 -0.7801 13 6 8.8536 6.7226 0.0336 14 6 10.1566 6.9157 -0.3978 15 6 10.4108 7.4626 -1.6463 16 6 9.3695 7.8139 -2.4742 17 6 8.0424 7.6165 -2.0492 18 6 6.9643 7.9741 -2.8913 19 1 6.0117 7.4753 -2.7902 20 6 7.1315 8.9743 -3.8556 21 7 8.1494 9.7927 -3.7796 22 14 5.9013 9.1411 -5.2514 23 1 4.8114 10.0633 -4.8431 24 1 6.5857 9.6845 -6.4520 25 1 5.3290 7.8080 -5.5687 26 8 2.7141 3.3512 0.8187 27 6 2.2775 2.1162 1.0901 28 8 2.1302 1.6987 2.2217 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.4011 2.3218 -1.7924 35 1 3.0910 1.7242 -1.7916 36 1 4.2678 3.8498 -2.1512 37 1 4.8772 3.0476 -0.6837 38 1 5.7462 7.6455 -0.6887 39 1 6.3550 6.8427 0.7787 40 1 8.6672 6.3007 1.0102 41 1 10.9801 6.6427 0.2454 42 1 11.4300 7.6131 -1.9704 43 1 9.5697 8.2393 -3.4465 44 1 8.2655 10.4858 -4.4482 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771769030.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:55 Heat of formation + Delta-G solvation = -138.397861 kcal Electronic energy + Delta-G solvation = -28080.811473 eV Core-core repulsion = 23963.375084 eV Total energy + Delta-G solvation = -4117.436388 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.90280 -39.97141 -37.80498 -37.43291 -36.26801 -35.89071 -33.69132 -32.42618 -31.85432 -30.72462 -29.52941 -27.42379 -26.12162 -25.04544 -24.29945 -22.88948 -21.44776 -20.99545 -20.77171 -19.39703 -18.02652 -17.35252 -17.25812 -17.05941 -16.93033 -16.19727 -15.64847 -15.46966 -15.15548 -14.76213 -14.54085 -14.26036 -14.06329 -13.77728 -13.73143 -13.63481 -12.92620 -12.76217 -12.64122 -12.56712 -12.41258 -12.24413 -11.82424 -11.62688 -11.59200 -11.26171 -11.13928 -11.04211 -10.88043 -10.79379 -10.78210 -10.48147 -10.46065 -9.84247 -9.55102 -9.45345 -9.35020 -9.21771 -7.40024 -7.37550 -6.80458 -4.42375 2.09458 2.48295 2.60893 2.81115 2.85574 3.02434 3.06071 3.09318 3.14811 3.21691 3.83601 3.87949 4.17360 4.22238 4.55190 4.60301 4.71543 4.78308 4.90596 4.92492 5.06268 5.12825 5.26452 5.32517 5.49583 5.61038 5.72301 5.72841 5.93914 6.02131 6.06524 6.24371 6.37576 6.46069 6.67806 6.83994 7.01594 7.07647 7.22830 7.35029 7.57300 7.77543 7.84984 7.98044 8.06733 8.23643 8.35919 8.57519 8.83412 8.93436 10.13691 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.015023 B = 0.002746 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.334231 B =10193.371839 C =11511.557455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.142 3.858 3 N -0.634 5.634 4 C 0.074 3.926 5 C 0.074 3.926 6 H 0.130 0.870 7 C 0.058 3.942 8 O -0.358 6.358 9 C 0.461 3.539 10 O -0.491 6.491 11 C -0.041 4.041 12 C -0.196 4.196 13 C -0.076 4.076 14 C -0.240 4.240 15 C -0.103 4.103 16 C -0.159 4.159 17 C 0.130 3.870 18 C -0.458 4.458 19 H 0.073 0.927 20 C 0.077 3.923 21 N -0.791 5.791 22 Si 0.904 3.096 23 H -0.269 1.269 24 H -0.275 1.275 25 H -0.262 1.262 26 O -0.311 6.311 27 C 0.640 3.360 28 O -0.522 6.522 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.109 0.891 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.118 0.882 44 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.656 -12.882 0.325 18.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.022 3.978 3 N -0.383 5.383 4 C -0.050 4.050 5 C 0.018 3.982 6 H 0.147 0.853 7 C -0.017 4.017 8 O -0.277 6.277 9 C 0.304 3.696 10 O -0.376 6.376 11 C -0.078 4.078 12 C -0.198 4.198 13 C -0.094 4.094 14 C -0.259 4.259 15 C -0.122 4.122 16 C -0.178 4.178 17 C 0.128 3.872 18 C -0.488 4.488 19 H 0.092 0.908 20 C -0.141 4.141 21 N -0.417 5.417 22 Si 0.728 3.272 23 H -0.194 1.194 24 H -0.200 1.200 25 H -0.186 1.186 26 O -0.220 6.220 27 C 0.395 3.605 28 O -0.407 6.407 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.127 0.873 39 H 0.109 0.891 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.136 0.864 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.347 -12.950 0.743 18.612 hybrid contribution -0.434 0.013 -1.002 1.092 sum -13.781 -12.937 -0.260 18.904 Atomic orbital electron populations 1.22205 0.95424 1.02725 1.02759 1.21296 0.94406 0.78296 1.03830 1.48166 1.69277 1.15164 1.05683 1.22766 1.03059 0.89847 0.89314 1.23910 0.98286 0.98596 0.77436 0.85259 1.23173 0.92878 0.85838 0.99833 1.86591 1.34286 1.35828 1.70958 1.24595 0.78157 0.89187 0.77679 1.90646 1.56366 1.55381 1.35231 1.20000 0.96643 0.90559 1.00587 1.19041 0.90705 1.13566 0.96449 1.20345 0.92937 0.98834 0.97324 1.20328 0.95106 1.12124 0.98331 1.20705 0.97311 0.99368 0.94814 1.21303 0.92000 1.04472 1.00020 1.17349 0.92911 0.87668 0.89287 1.19461 0.98279 1.16767 1.14264 0.90843 1.25892 0.95953 0.94272 0.97953 1.69815 1.27398 1.12370 1.32081 0.86378 0.80825 0.79533 0.80435 1.19372 1.20031 1.18562 1.87452 1.79492 1.29902 1.25189 1.18628 0.76574 0.79820 0.85512 1.91033 1.57410 1.71579 1.20677 0.91943 0.92267 0.90940 0.89630 0.89327 0.88136 0.88399 0.88661 0.90480 0.87294 0.89146 0.89473 0.89468 0.89429 0.86424 0.90812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.98 10.24 37.16 0.38 -0.60 16 2 C 0.14 0.93 6.73 -4.04 -0.03 0.90 16 3 N -0.63 -5.78 2.96 -178.85 -0.53 -6.31 16 4 C 0.07 0.47 7.34 -3.15 -0.02 0.45 16 5 C 0.07 0.70 4.16 -26.16 -0.11 0.59 16 6 H 0.13 0.97 8.14 -51.93 -0.42 0.55 16 7 C 0.06 0.70 5.01 37.16 0.19 0.89 16 8 O -0.36 -5.82 10.22 -40.63 -0.42 -6.23 16 9 C 0.46 8.98 7.59 36.01 0.27 9.26 16 10 O -0.49 -11.01 15.78 -18.75 -0.30 -11.31 16 11 C -0.04 -0.80 5.30 -29.03 -0.15 -0.95 16 12 C -0.20 -4.62 4.43 -103.91 -0.46 -5.08 16 13 C -0.08 -1.73 9.66 -39.66 -0.38 -2.11 16 14 C -0.24 -5.47 10.05 -39.29 -0.39 -5.87 16 15 C -0.10 -2.46 10.02 -39.66 -0.40 -2.86 16 16 C -0.16 -4.13 8.68 -38.87 -0.34 -4.47 16 17 C 0.13 3.39 5.56 -106.83 -0.59 2.79 16 18 C -0.46 -11.64 8.14 -37.74 -0.31 -11.94 16 19 H 0.07 1.79 6.68 -52.48 -0.35 1.44 16 20 C 0.08 1.88 5.16 -17.34 -0.09 1.79 16 21 N -0.79 -19.86 10.97 55.55 0.61 -19.25 16 22 Si 0.90 18.05 29.59 -169.99 -5.03 13.02 16 23 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 24 H -0.28 -5.41 7.11 56.52 0.40 -5.00 16 25 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 26 O -0.31 -4.26 10.79 -39.23 -0.42 -4.68 16 27 C 0.64 8.70 8.85 53.71 0.48 9.17 16 28 O -0.52 -8.96 17.54 -19.11 -0.34 -9.29 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.09 0.67 7.93 -51.93 -0.41 0.26 16 34 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.10 0.48 7.73 -51.93 -0.40 0.08 16 36 H 0.10 1.03 8.13 -51.93 -0.42 0.60 16 37 H 0.08 0.99 8.13 -51.93 -0.42 0.57 16 38 H 0.11 2.09 7.06 -51.93 -0.37 1.73 16 39 H 0.09 1.53 8.05 -51.93 -0.42 1.11 16 40 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 41 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 42 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 43 H 0.12 3.14 6.22 -52.49 -0.33 2.81 16 44 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 LS Contribution 377.35 15.07 5.69 5.69 Total: -1.00 -33.31 377.35 -8.75 -42.07 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -6.06 Total: 4.35 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: -1.96 Total: -8.04 kcal Atomic # 7 Polarization: -25.64 SS G_CDS: 0.08 Total: -25.57 kcal Atomic # 8 Polarization: -30.05 SS G_CDS: -1.47 Total: -31.52 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.03 Total: 13.02 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.31 -8.75 -42.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771769030.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.333 kcal (2) G-P(sol) polarization free energy of solvation -33.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds