Wall clock time and date at job start Tue Mar 31 2020 18:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47186 * 2 1 4 4 C 1.47092 * 125.55786 * 269.97566 * 3 2 1 5 5 C 1.54092 * 103.77547 * 179.97438 * 4 3 2 6 6 H 1.08999 * 110.64208 * 241.30608 * 5 4 3 7 7 C 1.53007 * 110.51912 * 118.63196 * 5 4 3 8 8 O 1.45196 * 109.46901 * 178.95879 * 7 5 4 9 9 C 1.34231 * 116.99870 * 179.97438 * 8 7 5 10 10 O 1.20820 * 120.00406 * 359.97438 * 9 8 7 11 11 C 1.50707 * 119.99887 * 180.02562 * 9 8 7 12 12 C 1.50704 * 109.46977 * 180.02562 * 11 9 8 13 13 C 1.37642 * 120.12336 * 264.72271 * 12 11 9 14 14 C 1.38610 * 120.24599 * 179.69991 * 13 12 11 15 15 C 1.38651 * 120.50097 * 0.60142 * 14 13 12 16 16 C 1.37596 * 120.25166 * 359.67469 * 15 14 13 17 17 C 1.40684 * 120.13127 * 84.99324 * 12 11 9 18 18 C 1.41398 * 120.24856 * 0.02738 * 17 12 11 19 19 H 1.08005 * 119.99574 * 334.05231 * 18 17 12 20 20 C 1.39943 * 120.00631 * 154.04691 * 18 17 12 21 21 N 1.30829 * 119.99926 * 343.66033 * 20 18 17 22 22 Si 1.86800 * 120.00141 * 163.66315 * 20 18 17 23 23 H 1.48496 * 109.47268 * 90.00044 * 22 20 18 24 24 H 1.48501 * 109.46632 * 209.99968 * 22 20 18 25 25 H 1.48502 * 109.47052 * 329.99569 * 22 20 18 26 26 O 1.45696 * 104.01046 * 0.02562 * 5 4 3 27 27 C 1.33772 * 109.47629 * 359.97438 * 26 5 4 28 28 O 1.21508 * 123.07452 * 179.97438 * 27 26 5 29 29 H 1.09004 * 109.47254 * 300.00044 * 1 2 3 30 30 H 1.08999 * 109.46887 * 59.99941 * 1 2 3 31 31 H 1.08996 * 109.47071 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47269 * 239.99740 * 2 1 3 33 33 H 1.08998 * 109.47253 * 119.99661 * 2 1 3 34 34 H 1.09000 * 110.56770 * 61.42989 * 4 3 2 35 35 H 1.09003 * 110.56543 * 298.57298 * 4 3 2 36 36 H 1.08997 * 109.47288 * 58.95683 * 7 5 4 37 37 H 1.08999 * 109.46907 * 298.95560 * 7 5 4 38 38 H 1.09001 * 109.46579 * 299.99474 * 11 9 8 39 39 H 1.08995 * 109.47402 * 59.99513 * 11 9 8 40 40 H 1.07999 * 119.87346 * 359.97438 * 13 12 11 41 41 H 1.07997 * 119.74942 * 180.29791 * 14 13 12 42 42 H 1.08002 * 119.87647 * 179.70676 * 15 14 13 43 43 H 1.08001 * 120.13278 * 180.02562 * 16 15 14 44 44 H 0.96997 * 119.99852 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3039 2.1875 -1.1966 5 6 2.7801 3.5369 -0.6248 6 1 2.1159 4.3426 -0.9376 7 6 4.2170 3.8278 -1.0626 8 8 4.6335 5.1138 -0.5325 9 6 5.8785 5.5200 -0.8268 10 8 6.5967 4.8239 -1.5046 11 6 6.3809 6.8439 -0.3109 12 6 7.7965 7.0613 -0.7801 13 6 8.8536 6.7226 0.0336 14 6 10.1566 6.9157 -0.3978 15 6 10.4108 7.4626 -1.6463 16 6 9.3695 7.8139 -2.4742 17 6 8.0424 7.6165 -2.0492 18 6 6.9643 7.9741 -2.8913 19 1 6.0117 7.4753 -2.7902 20 6 7.1315 8.9743 -3.8556 21 7 8.1494 9.7927 -3.7796 22 14 5.9013 9.1411 -5.2514 23 1 4.8114 10.0633 -4.8431 24 1 6.5857 9.6845 -6.4520 25 1 5.3290 7.8080 -5.5687 26 8 2.7141 3.3512 0.8187 27 6 2.2775 2.1162 1.0901 28 8 2.1302 1.6987 2.2217 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.4011 2.3218 -1.7924 35 1 3.0910 1.7242 -1.7916 36 1 4.2678 3.8498 -2.1512 37 1 4.8772 3.0476 -0.6837 38 1 5.7462 7.6455 -0.6887 39 1 6.3550 6.8427 0.7787 40 1 8.6672 6.3007 1.0102 41 1 10.9801 6.6427 0.2454 42 1 11.4300 7.6131 -1.9704 43 1 9.5697 8.2393 -3.4465 44 1 8.2655 10.4858 -4.4482 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771769030.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:54 Heat of formation + Delta-G solvation = -157.172133 kcal Electronic energy + Delta-G solvation = -28081.625586 eV Core-core repulsion = 23963.375084 eV Total energy + Delta-G solvation = -4118.250502 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.77879 -41.43108 -39.45300 -38.59706 -37.33333 -37.01021 -35.51634 -33.67900 -33.03426 -31.52910 -31.35820 -28.96188 -27.26141 -26.67529 -24.97187 -23.72993 -22.93740 -22.76926 -21.67371 -21.07532 -19.08745 -18.92439 -18.50801 -18.15954 -17.93798 -17.49332 -17.17149 -16.74683 -16.26806 -16.16786 -15.72862 -15.45323 -15.28525 -14.97700 -14.70539 -14.63084 -14.37958 -14.07376 -13.75171 -13.55742 -13.41161 -13.32397 -13.21071 -12.91640 -12.89245 -12.78655 -12.72166 -12.52697 -12.15969 -12.11963 -11.88215 -11.78748 -11.68906 -11.40603 -11.35305 -11.24508 -11.01859 -10.03862 -9.25905 -9.23064 -8.60628 -6.31952 0.90545 1.08728 1.33687 1.35964 1.39345 1.50475 1.51232 1.56361 1.79568 2.21578 2.33288 2.77581 3.10354 3.31154 3.59984 3.75834 3.87725 4.05075 4.17899 4.21652 4.30597 4.34149 4.35251 4.40454 4.47799 4.55538 4.56443 4.65990 4.69280 4.77922 4.82543 4.99310 5.07432 5.18137 5.28373 5.33771 5.38199 5.40600 5.51622 5.74669 6.01218 6.12839 6.19632 6.22213 6.38626 6.70047 6.84306 6.89208 6.96434 7.07540 8.35986 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.015023 B = 0.002746 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.334231 B =10193.371839 C =11511.557455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.134 3.866 3 N -0.623 5.623 4 C 0.078 3.922 5 C 0.073 3.927 6 H 0.154 0.846 7 C 0.050 3.950 8 O -0.357 6.357 9 C 0.470 3.530 10 O -0.527 6.527 11 C -0.043 4.043 12 C -0.203 4.203 13 C -0.087 4.087 14 C -0.245 4.245 15 C -0.112 4.112 16 C -0.192 4.192 17 C 0.099 3.901 18 C -0.483 4.483 19 H 0.075 0.925 20 C 0.035 3.965 21 N -0.824 5.824 22 Si 0.974 3.026 23 H -0.257 1.257 24 H -0.270 1.270 25 H -0.260 1.260 26 O -0.340 6.340 27 C 0.632 3.368 28 O -0.574 6.574 29 H 0.034 0.966 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.122 0.878 33 H 0.071 0.929 34 H 0.141 0.859 35 H 0.120 0.880 36 H 0.115 0.885 37 H 0.068 0.932 38 H 0.111 0.889 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.107 0.893 43 H 0.100 0.900 44 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.463 -13.969 -0.880 20.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.015 3.985 3 N -0.371 5.371 4 C -0.043 4.043 5 C 0.018 3.982 6 H 0.171 0.829 7 C -0.024 4.024 8 O -0.275 6.275 9 C 0.314 3.686 10 O -0.415 6.415 11 C -0.080 4.080 12 C -0.204 4.204 13 C -0.105 4.105 14 C -0.264 4.264 15 C -0.130 4.130 16 C -0.211 4.211 17 C 0.097 3.903 18 C -0.512 4.512 19 H 0.093 0.907 20 C -0.180 4.180 21 N -0.450 5.450 22 Si 0.795 3.205 23 H -0.181 1.181 24 H -0.195 1.195 25 H -0.184 1.184 26 O -0.250 6.250 27 C 0.386 3.614 28 O -0.463 6.463 29 H 0.053 0.947 30 H 0.092 0.908 31 H 0.109 0.891 32 H 0.140 0.860 33 H 0.090 0.910 34 H 0.159 0.841 35 H 0.138 0.862 36 H 0.133 0.867 37 H 0.086 0.914 38 H 0.129 0.871 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.133 0.867 42 H 0.125 0.875 43 H 0.118 0.882 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.173 -14.045 -0.482 20.681 hybrid contribution 0.155 0.292 -0.575 0.663 sum -15.018 -13.753 -1.056 20.391 Atomic orbital electron populations 1.22161 0.94550 1.03742 1.02047 1.21591 0.95115 0.77003 1.04779 1.48352 1.67705 1.15761 1.05309 1.23079 1.05549 0.87471 0.88247 1.24214 0.96832 1.01413 0.75723 0.82901 1.23571 0.94395 0.83485 1.00962 1.86542 1.32346 1.37834 1.70764 1.24315 0.78785 0.88686 0.76815 1.90631 1.57573 1.56440 1.36882 1.19999 0.94663 0.91064 1.02274 1.19443 0.93019 1.12228 0.95720 1.20758 0.92801 0.98418 0.98492 1.20719 0.96287 1.11166 0.98185 1.20977 0.97842 0.99048 0.95160 1.21323 0.93132 1.06570 1.00097 1.17737 0.93182 0.88714 0.90683 1.19651 0.98350 1.17636 1.15586 0.90690 1.26735 0.97821 0.93475 0.99923 1.69881 1.29089 1.12962 1.33070 0.85319 0.78510 0.79589 0.77082 1.18139 1.19481 1.18359 1.87401 1.79522 1.30252 1.27787 1.18861 0.76603 0.80032 0.85889 1.90977 1.59761 1.72603 1.22939 0.94694 0.90810 0.89123 0.86042 0.91013 0.84082 0.86176 0.86750 0.91368 0.87122 0.86322 0.86626 0.86655 0.87499 0.88236 0.90235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.52 10.24 71.98 0.74 -0.78 16 2 C 0.13 1.46 6.73 86.38 0.58 2.04 16 3 N -0.62 -10.05 2.96 -951.46 -2.82 -12.87 16 4 C 0.08 0.70 7.34 86.64 0.64 1.34 16 5 C 0.07 1.21 4.16 30.97 0.13 1.34 16 6 H 0.15 1.79 8.14 -2.39 -0.02 1.77 16 7 C 0.05 1.12 5.01 71.98 0.36 1.49 16 8 O -0.36 -11.14 10.22 -50.11 -0.51 -11.65 16 9 C 0.47 17.96 7.59 71.24 0.54 18.50 16 10 O -0.53 -23.53 15.78 21.98 0.35 -23.18 16 11 C -0.04 -1.66 5.30 29.11 0.15 -1.50 16 12 C -0.20 -9.55 4.43 -19.41 -0.09 -9.63 16 13 C -0.09 -3.85 9.66 22.22 0.21 -3.63 16 14 C -0.24 -10.92 10.05 22.46 0.23 -10.70 16 15 C -0.11 -5.37 10.02 22.22 0.22 -5.15 16 16 C -0.19 -10.29 8.68 22.73 0.20 -10.09 16 17 C 0.10 5.27 5.56 -21.29 -0.12 5.15 16 18 C -0.48 -24.95 8.14 23.46 0.19 -24.76 16 19 H 0.08 3.70 6.68 -2.91 -0.02 3.68 16 20 C 0.04 1.74 5.16 85.26 0.44 2.18 16 21 N -0.82 -42.35 10.97 21.83 0.24 -42.11 16 22 Si 0.97 36.83 29.59 68.60 2.03 38.86 16 23 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 24 H -0.27 -9.88 7.11 99.48 0.71 -9.17 16 25 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 26 O -0.34 -9.10 10.79 -45.98 -0.50 -9.59 16 27 C 0.63 17.01 8.85 129.91 1.15 18.16 16 28 O -0.57 -20.42 17.54 19.66 0.34 -20.08 16 29 H 0.03 0.52 8.14 -2.38 -0.02 0.50 16 30 H 0.07 0.46 8.14 -2.39 -0.02 0.45 16 31 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.07 1.04 7.93 -2.39 -0.02 1.02 16 34 H 0.14 0.26 8.14 -2.39 -0.02 0.24 16 35 H 0.12 0.63 7.73 -2.39 -0.02 0.61 16 36 H 0.11 2.17 8.13 -2.39 -0.02 2.15 16 37 H 0.07 1.68 8.13 -2.39 -0.02 1.66 16 38 H 0.11 4.22 7.06 -2.39 -0.02 4.21 16 39 H 0.12 3.83 8.05 -2.39 -0.02 3.81 16 40 H 0.12 4.37 8.06 -2.91 -0.02 4.35 16 41 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 42 H 0.11 4.54 8.06 -2.91 -0.02 4.51 16 43 H 0.10 5.57 6.22 -2.91 -0.02 5.55 16 44 H 0.29 13.37 8.30 -92.71 -0.77 12.60 16 Total: -1.00 -76.54 377.35 5.72 -70.82 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: 1.01 Total: 25.87 kcal Atomic # 6 Polarization: -21.64 SS G_CDS: 5.57 Total: -16.06 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: -2.58 Total: -54.98 kcal Atomic # 8 Polarization: -64.19 SS G_CDS: -0.32 Total: -64.50 kcal Atomic # 14 Polarization: 36.83 SS G_CDS: 2.03 Total: 38.86 kcal Total: -76.54 5.72 -70.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771769030.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.354 kcal (2) G-P(sol) polarization free energy of solvation -76.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds