Wall clock time and date at job start Tue Mar 31 2020 18:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21255 * 119.99420 * 2 1 4 4 C 1.47180 * 120.00276 * 179.97438 * 2 1 3 5 5 C 1.39888 * 120.13605 * 359.97438 * 4 2 1 6 6 C 1.37908 * 119.96559 * 180.02562 * 5 4 2 7 7 C 1.38302 * 120.25048 * 359.74224 * 6 5 4 8 8 C 1.38983 * 120.28005 * 0.51647 * 7 6 5 9 9 N 1.39958 * 119.98826 * 179.76528 * 8 7 6 10 10 C 1.34781 * 119.99828 * 214.82379 * 9 8 7 11 11 O 1.21283 * 120.00156 * 355.39214 * 10 9 8 12 12 C 1.50702 * 119.99856 * 175.39081 * 10 9 8 13 13 H 1.09006 * 109.47209 * 305.00176 * 12 10 9 14 14 C 1.53001 * 109.47020 * 64.99846 * 12 10 9 15 15 O 1.45197 * 109.47414 * 185.00144 * 12 10 9 16 16 C 1.34231 * 116.99948 * 149.99825 * 15 12 10 17 17 O 1.20823 * 120.00096 * 0.02562 * 16 15 12 18 18 C 1.50702 * 119.99646 * 179.97438 * 16 15 12 19 19 H 1.08994 * 109.47570 * 300.00647 * 18 16 15 20 20 C 1.53006 * 109.47094 * 60.00224 * 18 16 15 21 21 C 1.50696 * 109.47023 * 179.97438 * 18 16 15 22 22 H 1.08000 * 119.99946 * 0.02562 * 21 18 16 23 23 C 1.37875 * 120.00080 * 180.02562 * 21 18 16 24 24 N 1.31522 * 120.00093 * 0.02562 * 23 21 18 25 25 Si 1.86803 * 120.00086 * 180.02562 * 23 21 18 26 26 H 1.48498 * 109.47153 * 60.00175 * 25 23 21 27 27 H 1.48504 * 109.46822 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.47267 * 300.00052 * 25 23 21 29 29 C 1.38572 * 120.02783 * 359.48099 * 8 7 6 30 30 H 1.09007 * 109.46837 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47207 * 300.00017 * 1 2 3 32 32 H 1.08998 * 109.47377 * 60.00558 * 1 2 3 33 33 H 1.08000 * 120.02021 * 359.97438 * 5 4 2 34 34 H 1.08001 * 119.87766 * 180.02562 * 6 5 4 35 35 H 1.08002 * 119.85941 * 180.25692 * 7 6 5 36 36 H 0.97004 * 120.00401 * 34.82108 * 9 8 7 37 37 H 1.09001 * 109.47397 * 179.97438 * 14 12 10 38 38 H 1.09000 * 109.47410 * 299.99946 * 14 12 10 39 39 H 1.09002 * 109.47007 * 60.00600 * 14 12 10 40 40 H 1.09004 * 109.47023 * 60.00085 * 20 18 16 41 41 H 1.08998 * 109.47152 * 299.99738 * 20 18 16 42 42 H 1.08994 * 109.47358 * 179.97438 * 20 18 16 43 43 H 0.96995 * 120.00225 * 180.02562 * 24 23 21 44 44 H 1.08001 * 120.12411 * 180.23204 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0502 0.0000 4 6 2.2430 -1.2746 0.0006 5 6 1.5465 -2.4877 0.0017 6 6 2.2396 -3.6800 0.0027 7 6 3.6226 -3.6818 -0.0027 8 6 4.3251 -2.4826 0.0017 9 7 5.7246 -2.4917 0.0011 10 6 6.4049 -1.5403 0.6711 11 8 5.8075 -0.6295 1.2043 12 6 7.9079 -1.6086 0.7576 13 1 8.2049 -2.5745 1.1661 14 6 8.5073 -1.4398 -0.6399 15 8 8.3916 -0.5477 1.6230 16 6 9.5245 -0.7848 2.3028 17 8 10.0934 -1.8434 2.1784 18 6 10.0874 0.2700 3.2202 19 1 10.3077 1.1704 2.6468 20 6 9.0641 0.5971 4.3098 21 6 11.3529 -0.2424 3.8580 22 1 11.7138 -1.2326 3.6222 23 6 12.0501 0.5529 4.7425 24 7 11.6104 1.7587 5.0300 25 14 13.6193 -0.0820 5.5325 26 1 14.6127 -0.3988 4.4751 27 1 14.1739 0.9574 6.4366 28 1 13.3191 -1.3089 6.3132 29 6 3.6403 -1.2779 0.0005 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3634 0.5137 -0.8900 33 1 0.4665 -2.4907 0.0025 34 1 1.7004 -4.6158 0.0031 35 1 4.1591 -4.6192 -0.0060 36 1 6.2051 -3.1826 -0.4813 37 1 9.5945 -1.4887 -0.5773 38 1 8.1443 -2.2362 -1.2896 39 1 8.2105 -0.4739 -1.0484 40 1 8.8437 -0.3032 4.8833 41 1 8.1485 0.9676 3.8489 42 1 9.4714 1.3597 4.9736 43 1 12.1011 2.3183 5.6519 44 1 4.1846 -0.3451 0.0001 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771773890.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:06 Heat of formation + Delta-G solvation = -130.127701 kcal Electronic energy + Delta-G solvation = -27884.575049 eV Core-core repulsion = 23767.497282 eV Total energy + Delta-G solvation = -4117.077767 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.02383 -40.02695 -39.35493 -38.13984 -35.89806 -35.07903 -33.90599 -32.35180 -31.78515 -30.67032 -30.31802 -29.00585 -25.21934 -25.14972 -24.17518 -23.54748 -22.44319 -20.59118 -20.21787 -19.75095 -18.08058 -17.37001 -16.96525 -16.54665 -16.18747 -15.91351 -15.65844 -15.57438 -15.26677 -15.21971 -14.81257 -14.53735 -14.18603 -13.92039 -13.76936 -13.29455 -13.08196 -12.82291 -12.77099 -12.52042 -12.37700 -12.18769 -12.14991 -11.90111 -11.73687 -11.34006 -11.03675 -10.81966 -10.69602 -10.68189 -10.44512 -10.29750 -10.06328 -10.00231 -9.75516 -9.28835 -9.20225 -9.04745 -8.52644 -8.44558 -6.09748 -4.16190 0.33841 0.98923 2.06725 2.36472 2.49119 3.20506 3.32390 3.35373 3.38067 3.48581 3.53670 3.76665 4.37252 4.41205 4.47848 4.58910 4.66022 4.80536 4.85462 4.98491 5.01504 5.08340 5.12350 5.22997 5.27703 5.31055 5.49698 5.59902 5.63838 5.90539 5.93759 5.98052 6.02118 6.07504 6.13139 6.62156 6.70324 6.89925 6.90624 7.02380 7.13890 7.29508 7.44630 7.75626 7.88226 7.94971 8.13684 8.74765 8.91499 9.49130 10.97479 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.019777 B = 0.002373 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.428546 B =11796.429722 C =12560.179607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.391 3.609 3 O -0.448 6.448 4 C -0.154 4.154 5 C -0.094 4.094 6 C -0.114 4.114 7 C -0.115 4.115 8 C 0.139 3.861 9 N -0.675 5.675 10 C 0.517 3.483 11 O -0.486 6.486 12 C 0.067 3.933 13 H 0.109 0.891 14 C -0.164 4.164 15 O -0.335 6.335 16 C 0.468 3.532 17 O -0.516 6.516 18 C 0.061 3.939 19 H 0.066 0.934 20 C -0.135 4.135 21 C -0.515 4.515 22 H 0.075 0.925 23 C 0.062 3.938 24 N -0.890 5.890 25 Si 0.906 3.094 26 H -0.275 1.275 27 H -0.286 1.286 28 H -0.276 1.276 29 C -0.065 4.065 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.413 0.587 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.030 0.970 41 H 0.027 0.973 42 H 0.097 0.903 43 H 0.264 0.736 44 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.459 -11.371 -13.999 28.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.268 3.732 3 O -0.323 6.323 4 C -0.156 4.156 5 C -0.112 4.112 6 C -0.132 4.132 7 C -0.136 4.136 8 C 0.045 3.955 9 N -0.323 5.323 10 C 0.303 3.697 11 O -0.357 6.357 12 C 0.007 3.993 13 H 0.127 0.873 14 C -0.221 4.221 15 O -0.253 6.253 16 C 0.312 3.688 17 O -0.403 6.403 18 C 0.042 3.958 19 H 0.084 0.916 20 C -0.193 4.193 21 C -0.553 4.553 22 H 0.093 0.907 23 C -0.140 4.140 24 N -0.529 5.529 25 Si 0.734 3.266 26 H -0.201 1.201 27 H -0.212 1.212 28 H -0.201 1.201 29 C -0.085 4.085 30 H 0.102 0.898 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.153 0.847 34 H 0.151 0.849 35 H 0.150 0.850 36 H 0.250 0.750 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.049 0.951 41 H 0.046 0.954 42 H 0.115 0.885 43 H 0.074 0.926 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -21.268 -10.274 -13.501 27.206 hybrid contribution 1.083 -1.030 0.184 1.506 sum -20.185 -11.304 -13.317 26.694 Atomic orbital electron populations 1.22231 0.93645 1.04741 1.05047 1.22507 0.91653 0.87622 0.71389 1.90596 1.72007 1.34217 1.35489 1.20458 0.93924 0.95111 1.06102 1.21477 1.00172 0.91392 0.98193 1.20909 0.93330 0.98307 1.00668 1.21184 0.94767 0.96651 1.00982 1.17660 0.82685 0.93833 1.01275 1.43436 1.04338 1.31742 1.52803 1.20668 0.89650 0.81651 0.77718 1.90779 1.69647 1.32080 1.43149 1.22152 0.89408 0.94663 0.93036 0.87323 1.22149 1.03202 1.03332 0.93450 1.86830 1.42354 1.41784 1.54292 1.25609 0.76076 0.89918 0.77154 1.90480 1.59025 1.27525 1.63247 1.18790 0.94716 0.91457 0.90872 0.91607 1.21748 0.95990 1.01900 0.99640 1.21071 1.06058 1.02466 1.25663 0.90672 1.24947 0.98070 0.94761 0.96209 1.69878 1.39397 1.08514 1.35077 0.86419 0.82693 0.78416 0.79100 1.20089 1.21195 1.20099 1.21666 0.93238 0.98813 0.94785 0.89789 0.88673 0.88766 0.84720 0.84878 0.85035 0.75032 0.90021 0.90875 0.90833 0.95061 0.95398 0.88484 0.92568 0.82955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.21 10.19 36.01 0.37 -0.84 16 2 C 0.39 4.29 7.23 -30.68 -0.22 4.06 16 3 O -0.45 -6.94 17.09 5.58 0.10 -6.84 16 4 C -0.15 -1.65 5.87 -105.09 -0.62 -2.27 16 5 C -0.09 -0.68 9.44 -39.08 -0.37 -1.05 16 6 C -0.11 -0.75 10.02 -39.68 -0.40 -1.15 16 7 C -0.12 -0.91 9.96 -39.28 -0.39 -1.30 16 8 C 0.14 1.53 6.29 -83.75 -0.53 1.01 16 9 N -0.68 -7.16 5.30 -9.90 -0.05 -7.21 16 10 C 0.52 7.78 7.02 -10.98 -0.08 7.70 16 11 O -0.49 -9.41 13.94 -14.05 -0.20 -9.61 16 12 C 0.07 1.04 2.97 -27.88 -0.08 0.96 16 13 H 0.11 1.63 7.16 -51.93 -0.37 1.26 16 14 C -0.16 -2.00 9.49 37.16 0.35 -1.65 16 15 O -0.34 -7.00 9.32 -45.89 -0.43 -7.42 16 16 C 0.47 11.02 7.22 36.01 0.26 11.28 16 17 O -0.52 -12.62 14.68 -18.75 -0.28 -12.90 16 18 C 0.06 1.57 2.74 -92.92 -0.25 1.32 16 19 H 0.07 1.77 8.14 -51.93 -0.42 1.34 16 20 C -0.13 -3.37 8.90 37.16 0.33 -3.04 16 21 C -0.51 -14.49 8.37 -34.44 -0.29 -14.78 16 22 H 0.08 2.17 6.76 -52.49 -0.35 1.82 16 23 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 24 N -0.89 -25.14 11.32 55.43 0.63 -24.51 16 25 Si 0.91 21.54 29.54 -169.99 -5.02 16.52 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 28 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 29 C -0.06 -0.85 8.24 -38.90 -0.32 -1.17 16 30 H 0.08 0.29 5.60 -51.92 -0.29 0.00 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.14 0.54 5.92 -52.49 -0.31 0.23 16 34 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 35 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 36 H 0.41 2.77 8.45 -40.82 -0.34 2.43 16 37 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.07 0.59 7.78 -51.93 -0.40 0.19 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.03 0.64 8.11 -51.93 -0.42 0.22 16 42 H 0.10 2.58 6.07 -51.93 -0.31 2.26 16 43 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 44 H 0.15 2.50 5.81 -52.49 -0.30 2.19 16 LS Contribution 376.71 15.07 5.68 5.68 Total: -1.00 -35.81 376.71 -7.54 -43.34 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -5.63 Total: 2.25 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -2.33 Total: 0.70 kcal Atomic # 7 Polarization: -32.30 SS G_CDS: 0.57 Total: -31.72 kcal Atomic # 8 Polarization: -35.97 SS G_CDS: -0.80 Total: -36.77 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.81 -7.54 -43.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771773890.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.783 kcal (2) G-P(sol) polarization free energy of solvation -35.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds