Wall clock time and date at job start Tue Mar 31 2020 18:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21255 * 119.99420 * 2 1 4 4 C 1.47180 * 120.00276 * 179.97438 * 2 1 3 5 5 C 1.39888 * 120.13605 * 359.97438 * 4 2 1 6 6 C 1.37908 * 119.96559 * 180.02562 * 5 4 2 7 7 C 1.38302 * 120.25048 * 359.74224 * 6 5 4 8 8 C 1.38983 * 120.28005 * 0.51647 * 7 6 5 9 9 N 1.39958 * 119.98826 * 179.76528 * 8 7 6 10 10 C 1.34781 * 119.99828 * 214.82379 * 9 8 7 11 11 O 1.21283 * 120.00156 * 355.39214 * 10 9 8 12 12 C 1.50702 * 119.99856 * 175.39081 * 10 9 8 13 13 H 1.09006 * 109.47209 * 305.00176 * 12 10 9 14 14 C 1.53001 * 109.47020 * 64.99846 * 12 10 9 15 15 O 1.45197 * 109.47414 * 185.00144 * 12 10 9 16 16 C 1.34231 * 116.99948 * 149.99825 * 15 12 10 17 17 O 1.20823 * 120.00096 * 0.02562 * 16 15 12 18 18 C 1.50702 * 119.99646 * 179.97438 * 16 15 12 19 19 H 1.08994 * 109.47570 * 300.00647 * 18 16 15 20 20 C 1.53006 * 109.47094 * 60.00224 * 18 16 15 21 21 C 1.50696 * 109.47023 * 179.97438 * 18 16 15 22 22 H 1.08000 * 119.99946 * 0.02562 * 21 18 16 23 23 C 1.37875 * 120.00080 * 180.02562 * 21 18 16 24 24 N 1.31522 * 120.00093 * 0.02562 * 23 21 18 25 25 Si 1.86803 * 120.00086 * 180.02562 * 23 21 18 26 26 H 1.48498 * 109.47153 * 60.00175 * 25 23 21 27 27 H 1.48504 * 109.46822 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.47267 * 300.00052 * 25 23 21 29 29 C 1.38572 * 120.02783 * 359.48099 * 8 7 6 30 30 H 1.09007 * 109.46837 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47207 * 300.00017 * 1 2 3 32 32 H 1.08998 * 109.47377 * 60.00558 * 1 2 3 33 33 H 1.08000 * 120.02021 * 359.97438 * 5 4 2 34 34 H 1.08001 * 119.87766 * 180.02562 * 6 5 4 35 35 H 1.08002 * 119.85941 * 180.25692 * 7 6 5 36 36 H 0.97004 * 120.00401 * 34.82108 * 9 8 7 37 37 H 1.09001 * 109.47397 * 179.97438 * 14 12 10 38 38 H 1.09000 * 109.47410 * 299.99946 * 14 12 10 39 39 H 1.09002 * 109.47007 * 60.00600 * 14 12 10 40 40 H 1.09004 * 109.47023 * 60.00085 * 20 18 16 41 41 H 1.08998 * 109.47152 * 299.99738 * 20 18 16 42 42 H 1.08994 * 109.47358 * 179.97438 * 20 18 16 43 43 H 0.96995 * 120.00225 * 180.02562 * 24 23 21 44 44 H 1.08001 * 120.12411 * 180.23204 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0502 0.0000 4 6 2.2430 -1.2746 0.0006 5 6 1.5465 -2.4877 0.0017 6 6 2.2396 -3.6800 0.0027 7 6 3.6226 -3.6818 -0.0027 8 6 4.3251 -2.4826 0.0017 9 7 5.7246 -2.4917 0.0011 10 6 6.4049 -1.5403 0.6711 11 8 5.8075 -0.6295 1.2043 12 6 7.9079 -1.6086 0.7576 13 1 8.2049 -2.5745 1.1661 14 6 8.5073 -1.4398 -0.6399 15 8 8.3916 -0.5477 1.6230 16 6 9.5245 -0.7848 2.3028 17 8 10.0934 -1.8434 2.1784 18 6 10.0874 0.2700 3.2202 19 1 10.3077 1.1704 2.6468 20 6 9.0641 0.5971 4.3098 21 6 11.3529 -0.2424 3.8580 22 1 11.7138 -1.2326 3.6222 23 6 12.0501 0.5529 4.7425 24 7 11.6104 1.7587 5.0300 25 14 13.6193 -0.0820 5.5325 26 1 14.6127 -0.3988 4.4751 27 1 14.1739 0.9574 6.4366 28 1 13.3191 -1.3089 6.3132 29 6 3.6403 -1.2779 0.0005 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3634 0.5137 -0.8900 33 1 0.4665 -2.4907 0.0025 34 1 1.7004 -4.6158 0.0031 35 1 4.1591 -4.6192 -0.0060 36 1 6.2051 -3.1826 -0.4813 37 1 9.5945 -1.4887 -0.5773 38 1 8.1443 -2.2362 -1.2896 39 1 8.2105 -0.4739 -1.0484 40 1 8.8437 -0.3032 4.8833 41 1 8.1485 0.9676 3.8489 42 1 9.4714 1.3597 4.9736 43 1 12.1011 2.3183 5.6519 44 1 4.1846 -0.3451 0.0001 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771773890.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:05 Heat of formation + Delta-G solvation = -152.979221 kcal Electronic energy + Delta-G solvation = -27885.565965 eV Core-core repulsion = 23767.497282 eV Total energy + Delta-G solvation = -4118.068683 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.145 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.15283 -41.36844 -40.54913 -39.08894 -37.57721 -36.11201 -35.96778 -33.57477 -32.68781 -32.35989 -31.26316 -29.71585 -27.33484 -26.41304 -25.09029 -24.89473 -23.58957 -21.89915 -21.34016 -21.03176 -19.10757 -18.72484 -18.45918 -18.01638 -17.54071 -17.26933 -16.99550 -16.73403 -16.43752 -16.09440 -16.05231 -15.97553 -15.35934 -15.07207 -14.78465 -14.68207 -14.48449 -14.03218 -13.75532 -13.65422 -13.49429 -13.31745 -13.05379 -13.02538 -12.87900 -12.80816 -12.73932 -12.64303 -12.41508 -12.34090 -12.07258 -11.93571 -11.62197 -11.20586 -11.15400 -10.92104 -10.81831 -10.56490 -10.01566 -9.32997 -8.21644 -6.36567 -0.39730 0.21883 1.12992 1.21536 1.35248 1.42580 1.44895 1.48046 1.53846 2.15057 2.43495 2.77881 3.02652 3.08270 3.33329 3.66852 3.78724 3.87718 4.01408 4.03894 4.06760 4.19845 4.39763 4.42481 4.53967 4.55713 4.61015 4.64008 4.65063 4.83283 4.91662 4.92068 4.98649 5.06962 5.21161 5.24114 5.29975 5.33630 5.36145 5.41154 5.62968 5.81385 5.89530 6.03145 6.15445 6.52094 6.69856 6.84920 6.92835 7.32482 8.85135 Molecular weight = 333.15amu Principal moments of inertia in cm(-1) A = 0.019777 B = 0.002373 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.428546 B =11796.429722 C =12560.179607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.385 3.615 3 O -0.514 6.514 4 C -0.180 4.180 5 C -0.073 4.073 6 C -0.106 4.106 7 C -0.100 4.100 8 C 0.112 3.888 9 N -0.650 5.650 10 C 0.519 3.481 11 O -0.540 6.540 12 C 0.059 3.941 13 H 0.120 0.880 14 C -0.158 4.158 15 O -0.349 6.349 16 C 0.477 3.523 17 O -0.528 6.528 18 C 0.051 3.949 19 H 0.049 0.951 20 C -0.121 4.121 21 C -0.537 4.537 22 H 0.063 0.937 23 C 0.019 3.981 24 N -0.913 5.913 25 Si 0.970 3.030 26 H -0.270 1.270 27 H -0.276 1.276 28 H -0.271 1.271 29 C -0.101 4.101 30 H 0.119 0.881 31 H 0.100 0.900 32 H 0.106 0.894 33 H 0.177 0.823 34 H 0.179 0.821 35 H 0.166 0.834 36 H 0.433 0.567 37 H 0.070 0.930 38 H 0.122 0.878 39 H 0.067 0.933 40 H 0.029 0.971 41 H 0.036 0.964 42 H 0.080 0.920 43 H 0.269 0.731 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.502 -15.173 -14.879 31.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.267 3.733 3 O -0.394 6.394 4 C -0.181 4.181 5 C -0.091 4.091 6 C -0.124 4.124 7 C -0.120 4.120 8 C 0.019 3.981 9 N -0.299 5.299 10 C 0.306 3.694 11 O -0.416 6.416 12 C 0.000 4.000 13 H 0.137 0.863 14 C -0.215 4.215 15 O -0.266 6.266 16 C 0.322 3.678 17 O -0.417 6.417 18 C 0.032 3.968 19 H 0.067 0.933 20 C -0.179 4.179 21 C -0.575 4.575 22 H 0.082 0.918 23 C -0.181 4.181 24 N -0.551 5.551 25 Si 0.794 3.206 26 H -0.195 1.195 27 H -0.201 1.201 28 H -0.197 1.197 29 C -0.121 4.121 30 H 0.137 0.863 31 H 0.119 0.881 32 H 0.124 0.876 33 H 0.194 0.806 34 H 0.196 0.804 35 H 0.183 0.817 36 H 0.274 0.726 37 H 0.089 0.911 38 H 0.140 0.860 39 H 0.086 0.914 40 H 0.049 0.951 41 H 0.055 0.945 42 H 0.099 0.901 43 H 0.078 0.922 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -23.350 -14.138 -14.431 30.877 hybrid contribution 1.546 0.062 0.359 1.588 sum -21.804 -14.076 -14.073 29.523 Atomic orbital electron populations 1.22276 0.89345 1.07317 1.05787 1.23430 0.94051 0.86909 0.68940 1.90574 1.73663 1.36243 1.38897 1.20666 0.93144 0.96713 1.07613 1.21957 1.02157 0.89931 0.95078 1.21504 0.92857 0.99739 0.98251 1.21613 0.95674 0.96276 0.98468 1.17872 0.82400 0.94458 1.03396 1.43111 1.04638 1.30715 1.51483 1.20577 0.89285 0.81835 0.77704 1.90781 1.70419 1.34435 1.45929 1.22635 0.90130 0.93373 0.93843 0.86250 1.22186 1.02349 1.04999 0.91987 1.86735 1.41032 1.43997 1.54827 1.24865 0.76742 0.89004 0.77153 1.90449 1.59702 1.27726 1.63816 1.18685 0.94857 0.91720 0.91530 0.93346 1.21567 0.95994 1.01222 0.99125 1.21210 1.07304 1.02263 1.26711 0.91834 1.25748 1.01079 0.94882 0.96414 1.69981 1.40509 1.09325 1.35252 0.85430 0.78784 0.78080 0.78295 1.19537 1.20116 1.19654 1.21495 0.94780 0.98020 0.97827 0.86251 0.88116 0.87552 0.80585 0.80387 0.81692 0.72626 0.91095 0.85962 0.91425 0.95132 0.94540 0.90135 0.92223 0.87792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.93 10.19 71.24 0.73 -1.20 16 2 C 0.38 8.74 7.23 28.04 0.20 8.94 16 3 O -0.51 -17.67 17.09 -2.95 -0.05 -17.72 16 4 C -0.18 -3.81 5.87 -20.17 -0.12 -3.93 16 5 C -0.07 -0.77 9.44 22.59 0.21 -0.56 16 6 C -0.11 -0.84 10.02 22.21 0.22 -0.62 16 7 C -0.10 -1.19 9.96 22.46 0.22 -0.97 16 8 C 0.11 2.38 6.29 38.10 0.24 2.62 16 9 N -0.65 -13.34 5.30 -303.62 -1.61 -14.95 16 10 C 0.52 16.18 7.02 87.66 0.62 16.80 16 11 O -0.54 -22.67 13.94 15.71 0.22 -22.45 16 12 C 0.06 1.85 2.97 29.85 0.09 1.94 16 13 H 0.12 3.53 7.16 -2.38 -0.02 3.51 16 14 C -0.16 -3.78 9.49 71.98 0.68 -3.10 16 15 O -0.35 -15.19 9.32 -45.09 -0.42 -15.61 16 16 C 0.48 23.26 7.22 71.24 0.51 23.77 16 17 O -0.53 -26.30 14.68 21.97 0.32 -25.98 16 18 C 0.05 2.77 2.74 -12.28 -0.03 2.73 16 19 H 0.05 2.75 8.14 -2.39 -0.02 2.73 16 20 C -0.12 -6.30 8.90 71.98 0.64 -5.66 16 21 C -0.54 -31.00 8.37 25.60 0.21 -30.78 16 22 H 0.06 3.75 6.76 -2.91 -0.02 3.73 16 23 C 0.02 1.04 5.30 84.65 0.45 1.49 16 24 N -0.91 -52.43 11.32 21.45 0.24 -52.18 16 25 Si 0.97 44.28 29.54 68.60 2.03 46.30 16 26 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 27 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 28 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 29 C -0.10 -2.82 8.24 22.71 0.19 -2.63 16 30 H 0.12 0.28 5.60 -2.38 -0.01 0.26 16 31 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.18 0.32 5.92 -2.91 -0.02 0.30 16 34 H 0.18 -0.04 8.06 -2.91 -0.02 -0.06 16 35 H 0.17 0.85 8.06 -2.91 -0.02 0.82 16 36 H 0.43 4.80 8.45 -92.71 -0.78 4.01 16 37 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.12 1.67 7.78 -2.39 -0.02 1.65 16 39 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.03 1.52 8.14 -2.38 -0.02 1.50 16 41 H 0.04 1.77 8.11 -2.39 -0.02 1.75 16 42 H 0.08 4.44 6.07 -2.39 -0.01 4.42 16 43 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 44 H 0.10 3.91 5.81 -2.91 -0.02 3.90 16 Total: -1.00 -86.29 376.71 6.07 -80.23 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 0.27 Total: 13.50 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: 5.07 Total: 8.86 kcal Atomic # 7 Polarization: -65.77 SS G_CDS: -1.37 Total: -67.14 kcal Atomic # 8 Polarization: -81.83 SS G_CDS: 0.07 Total: -81.76 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -86.29 6.07 -80.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771773890.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.752 kcal (2) G-P(sol) polarization free energy of solvation -86.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds